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PMC:1064873 / 15966-16269 JSONTXT

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LappsTest

Id Subject Object Predicate Lexical cue
T12191 253-256 Protein denotes CRP
T12190 196-199 Protein denotes CRP
T12189 51-55 Protein denotes CD4+

2_test

Id Subject Object Predicate Lexical cue
15535835-7306232-4156889 275-277 7306232 denotes 26

biosemtest

Id Subject Object Predicate Lexical cue
T12792 195-201 UMLS/C0444497 denotes CRP l
T12789 44-54 UMLS/C1548180 denotes ion by CD4
T12784 85-89 UMLS/C1332709 denotes stim
T12774 262-265 UMLS/C1413716 denotes <
T12773 203-206 UMLS/C1413716 denotes el
T12768 262-265 UMLS/C0006560 denotes <
T12767 203-206 UMLS/C0006560 denotes el
T12764 125-130 UMLS/C0439275 denotes L-10
T12754 71-76 UMLS/C0231290 denotes D3 an
T12747 85-89 UMLS/C1426202 denotes stim
T12732 143-151 UMLS/C1705908 denotes s with a
T12710 262-265 UMLS/C1826658 denotes <
T12709 203-206 UMLS/C1826658 denotes el
T12689 262-265 UMLS/C1879974 denotes <
T12688 203-206 UMLS/C1879974 denotes el
T12681 195-201 UMLS/C1706309 denotes CRP l
T12677 143-151 UMLS/C1550655 denotes s with a
T12646 111-119 UMLS/C0150312 denotes e of 1 n
T12644 173-181 UMLS/C0439064 denotes e inflam
T12642 77-80 UMLS/C2698592 denotes CD
T12527 131-136 UMLS/C1334098 denotes n RA
T12523 131-136 UMLS/C1522550 denotes n RA
T12495 143-151 UMLS/C0030705 denotes s with a
T12491 111-119 UMLS/C0392148 denotes e of 1 n
T12488 262-265 UMLS/C0201657 denotes <
T12487 203-206 UMLS/C0201657 denotes el
T12479 143-151 UMLS/C1578479 denotes s with a
T12473 143-151 UMLS/C1578483 denotes s with a
T12468 143-151 UMLS/C1578480 denotes s with a
T12463 143-151 UMLS/C1578481 denotes s with a
T12460 77-80 UMLS/C0108779 denotes CD
T12456 143-151 UMLS/C1578486 denotes s with a
T12450 143-151 UMLS/C1578485 denotes s with a
T12446 164-171 UMLS/C0012634 denotes (multi
T12444 195-201 UMLS/C0392905 denotes CRP l
T12443 195-201 UMLS/C1269611 denotes CRP l
T12441 143-151 UMLS/C1578484 denotes s with a
T12434 157-163 UMLS/C1561513 denotes diseas
T12418 157-163 UMLS/C0205177 denotes diseas
T12410 262-265 UMLS/C1413766 denotes <
T12409 203-206 UMLS/C1413766 denotes el
T12403 157-163 UMLS/C2347179 denotes diseas
T12395 131-136 UMLS/C0085295 denotes n RA
T12365 157-163 UMLS/C1561511 denotes diseas
T12358 157-163 UMLS/C1561512 denotes diseas
T12347 157-163 UMLS/C1561510 denotes diseas
T12341 157-163 UMLS/C1561509 denotes diseas
T12335 157-163 UMLS/C1561508 denotes diseas
T12333 182-194 UMLS/C0333348 denotes atory joints
T12328 157-163 UMLS/C1561507 denotes diseas
T12631 157-163 UMLS/C1553875 denotes diseas
T12622 63-70 UMLS/C0039194 denotes after
T12616 239-260 UMLS/C0544452 denotes in remission, CRP lev
T12615 230-246 UMLS/C0544452 denotes disease (in remi
T12611 266-271 UMLS/C0456079 denotes 0 mg/
T12610 207-212 UMLS/C0456079 denotes 10 m
T12609 27-33 UMLS/C0456079 denotes of IF
T12606 85-89 UMLS/C0075747 denotes stim
T12603 195-201 UMLS/C0022417 denotes CRP l
T12600 14-22 UMLS/C1707455 denotes ed the l
T12583 131-136 UMLS/C1149215 denotes n RA
T12570 266-271 UMLS/C0441889 denotes 0 mg/
T12569 207-212 UMLS/C0441889 denotes 10 m
T12568 27-33 UMLS/C0441889 denotes of IF
T12545 71-76 UMLS/C0687676 denotes D3 an
T12315 157-163 UMLS/C1547419 denotes diseas

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T13378 294-302 NN denotes controls
T13377 286-293 JJ denotes healthy
T13376 283-285 IN denotes in
T13375 279-282 CC denotes and
T13374 277-278 -RRB- denotes ]
T13373 275-277 CD denotes 26
T13372 274-275 -LRB- denotes [
T13371 272-273 -RRB- denotes )
T13370 268-272 NN denotes mg/l
T13369 265-267 CD denotes 10
T13368 263-264 SYM denotes <
T13367 257-262 NN denotes level
T13366 253-256 NN denotes CRP
T13365 251-252 -COMMA- denotes ,
T13364 242-251 NN denotes remission
T13363 239-241 IN denotes in
T13362 238-239 -LRB- denotes (
T13361 230-237 NN denotes disease
T13360 221-229 JJ denotes inactive
T13359 217-220 CC denotes and
T13358 215-216 -RRB- denotes )
T13357 211-215 NN denotes mg/l
T13356 208-210 CD denotes 10
T13355 206-207 NN denotes ≥
T13354 200-205 NN denotes level
T13353 196-199 NN denotes CRP
T13352 194-195 -COMMA- denotes ,
T13351 188-194 NN denotes joints
T13350 175-187 JJ denotes inflammatory
T13349 166-174 JJ denotes multiple
T13348 165-166 -LRB- denotes (
T13347 157-164 NN denotes disease
T13346 150-156 JJ denotes active
T13345 145-149 IN denotes with
T13344 136-144 NN denotes patients
T13343 133-135 NN denotes RA
T13342 130-132 IN denotes in
T13341 124-129 NN denotes IL-10
T13340 118-123 NN denotes ng/ml
T13339 116-117 CD denotes 1
T13338 113-115 IN denotes of
T13337 104-112 NN denotes presence
T13336 100-103 DT denotes the
T13335 97-99 IN denotes in
T13334 83-96 NN denotes costimulation
T13333 78-82 NN denotes CD28
T13332 74-77 CC denotes and
T13331 70-73 NN denotes CD3
T13330 64-69 IN denotes after
T13329 58-63 NN denotes cells
T13328 56-57 NN denotes T
T13327 51-55 JJ denotes CD4+
T13326 48-50 IN denotes by
T13325 37-47 NN denotes production
T13324 31-36 NN denotes IFN-γ
T13323 28-30 IN denotes of
T13322 21-27 NN denotes levels
T13321 17-20 DT denotes the
T13320 8-16 VB denotes compared
T13319 3-7 RB denotes thus
T13318 0-2 PRP denotes We
R6584 T13318 T13320 arg1Of We,compared
R6585 T13320 T13319 arg1Of compared,thus
R6586 T13320 T13326 arg1Of compared,by
R6587 T13320 T13330 arg1Of compared,after
R6588 T13320 T13335 arg1Of compared,in
R6589 T13322 T13320 arg2Of levels,compared
R6590 T13322 T13321 arg1Of levels,the
R6591 T13322 T13323 arg1Of levels,of
R6592 T13325 T13323 arg2Of production,of
R6593 T13325 T13324 arg1Of production,IFN-γ
R6594 T13329 T13326 arg2Of cells,by
R6595 T13329 T13327 arg1Of cells,CD4+
R6596 T13329 T13328 arg1Of cells,T
R6597 T13331 T13332 arg1Of CD3,and
R6598 T13333 T13332 arg2Of CD28,and
R6599 T13334 T13330 arg2Of costimulation,after
R6600 T13334 T13331 arg1Of costimulation,CD3
R6601 T13334 T13333 arg1Of costimulation,CD28
R6602 T13335 T13336 arg1Of in,the
R6603 T13335 T13338 arg1Of in,of
R6604 T13337 T13335 arg2Of presence,in
R6605 T13339 T13340 arg1Of 1,ng/ml
R6606 T13341 T13335 arg3Of IL-10,in
R6607 T13341 T13339 arg1Of IL-10,1
R6608 T13341 T13342 arg1Of IL-10,in
R6609 T13341 T13376 arg1Of IL-10,in
R6610 T13342 T13375 arg1Of in,and
R6611 T13344 T13343 arg1Of patients,RA
R6612 T13344 T13345 arg1Of patients,with
R6613 T13344 T13348 arg1Of patients,(
R6614 T13344 T13359 arg1Of patients,and
R6615 T13347 T13345 arg2Of disease,with
R6616 T13347 T13346 arg1Of disease,active
R6617 T13351 T13348 arg2Of joints,(
R6618 T13351 T13349 arg1Of joints,multiple
R6619 T13351 T13350 arg1Of joints,inflammatory
R6620 T13351 T13352 arg1Of joints,","
R6621 T13357 T13352 arg2Of mg/l,","
R6622 T13357 T13353 arg1Of mg/l,CRP
R6623 T13357 T13354 arg1Of mg/l,level
R6624 T13357 T13355 arg1Of mg/l,≥
R6625 T13357 T13356 arg1Of mg/l,10
R6626 T13358 T13348 arg3Of ),(
R6627 T13359 T13342 arg2Of and,in
R6628 T13361 T13359 arg2Of disease,and
R6629 T13361 T13360 arg1Of disease,inactive
R6630 T13361 T13362 arg1Of disease,(
R6631 T13361 T13372 arg1Of disease,[
R6632 T13363 T13362 arg2Of in,(
R6633 T13364 T13363 arg2Of remission,in
R6634 T13364 T13365 arg1Of remission,","
R6635 T13367 T13365 arg2Of level,","
R6636 T13367 T13366 arg1Of level,CRP
R6637 T13367 T13370 arg1Of level,mg/l
R6638 T13369 T13368 arg1Of 10,<
R6639 T13370 T13369 arg1Of mg/l,10
R6640 T13371 T13362 arg3Of ),(
R6641 T13373 T13372 arg2Of 26,[
R6642 T13374 T13372 arg3Of ],[
R6643 T13376 T13375 arg2Of in,and
R6644 T13378 T13376 arg2Of controls,in
R6645 T13378 T13377 arg1Of controls,healthy

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T12913 124-129 Protein denotes IL-10
T12912 78-82 Protein denotes CD28
T12911 70-73 Protein denotes CD3
T12910 51-54 Protein denotes CD4
T12909 31-36 Protein denotes IFN-γ

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T13112 70-73 http://www.uniprot.org/uniprot/P09693 denotes CD3
T13109 70-73 http://www.uniprot.org/uniprot/P07766 denotes CD3
T13106 70-73 http://www.uniprot.org/uniprot/P04234 denotes CD3
T13103 70-73 http://www.uniprot.org/uniprot/P20963 denotes CD3
T13100 78-82 http://www.uniprot.org/uniprot/P10747 denotes CD28
T13092 51-54 http://www.uniprot.org/uniprot/P01730 denotes CD4
T13072 124-129 http://www.uniprot.org/uniprot/P22301 denotes IL-10
T13083 31-36 http://www.uniprot.org/uniprot/P01579 denotes IFN-γ

GO-CC

Id Subject Object Predicate Lexical cue
T12956 58-63 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

GO-MF

Id Subject Object Predicate Lexical cue
T12937 124-129 http://purl.obolibrary.org/obo/GO_0005141 denotes IL-10

sentences

Id Subject Object Predicate Lexical cue
T12801 0-303 Sentence denotes We thus compared the levels of IFN-γ production by CD4+ T cells after CD3 and CD28 costimulation in the presence of 1 ng/ml IL-10 in RA patients with active disease (multiple inflammatory joints, CRP level ≥ 10 mg/l) and inactive disease (in remission, CRP level < 10 mg/l) [26] and in healthy controls.
T97 0-303 Sentence denotes We thus compared the levels of IFN-γ production by CD4+ T cells after CD3 and CD28 costimulation in the presence of 1 ng/ml IL-10 in RA patients with active disease (multiple inflammatory joints, CRP level ≥ 10 mg/l) and inactive disease (in remission, CRP level < 10 mg/l) [26] and in healthy controls.

simple1

Id Subject Object Predicate Lexical cue
T13138 70-73 Protein denotes CD3
T13137 51-54 Protein denotes CD4
T13136 31-36 Protein denotes IFN-γ
T13140 124-129 Protein denotes IL-10
T13139 78-82 Protein denotes CD28

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T14400 37-47 Gene_expression denotes production
T14375 124-129 Protein denotes IL-10
T14374 78-82 Protein denotes CD28
T14373 70-73 Protein denotes CD3
T14372 51-54 Protein denotes CD4
T14371 31-36 Protein denotes IFN-γ
R7415 T14371 T14400 themeOf IFN-γ,production

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T13635 37-47 Gene_expression denotes production
T13609 124-129 Protein denotes IL-10
T13608 78-82 Protein denotes CD28
T13607 70-73 Protein denotes CD3
T13606 51-54 Protein denotes CD4
T13605 31-36 Protein denotes IFN-γ
R6862 T13605 T13635 themeOf IFN-γ,production

DLUT931

Id Subject Object Predicate Lexical cue
T14145 83-96 Negative_regulation denotes costimulation
T14144 37-47 Gene_expression denotes production
T14116 124-129 Protein denotes IL-10
T14115 78-82 Protein denotes CD28
T14114 70-73 Protein denotes CD3
T14113 51-54 Protein denotes CD4
T14112 31-36 Protein denotes IFN-γ
R7331 T14112 T14144 themeOf IFN-γ,production
R7332 T14114 T14145 themeOf CD3,costimulation
R7333 T14115 T14145 themeOf CD28,costimulation

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T14341 31-63 Gene_expression denotes IFN-γ production by CD4+ T cells
T14339 78-96 Positive_regulation denotes CD28 costimulation
T14286 31-36 Protein denotes IFN-γ
T14285 48-63 Entity denotes by CD4+ T cells
T14283 70-73 Protein denotes CD3
T14329 116-144 Protein denotes 1 ng/ml IL-10 in RA patients
T14323 253-256 Protein denotes CRP
T14309 133-135 Protein denotes RA
T14299 196-199 Protein denotes CRP
T14297 78-82 Protein denotes CD28
R7394 T14286 T14341 themeOf IFN-γ,IFN-γ production by CD4+ T cells
R7396 T14297 T14339 themeOf CD28,CD28 costimulation

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T13876 302-303 . denotes .
T13875 294-302 NNS denotes controls
T13874 286-293 JJ denotes healthy
T13873 283-285 IN denotes in
T13872 279-282 CC denotes and
T13871 277-278 NNP denotes ]
T13870 275-277 CD denotes 26
T13869 274-275 NNP denotes [
T13868 272-273 -RRB- denotes )
T13867 268-272 NN denotes mg/l
T13866 265-267 CD denotes 10
T13865 263-264 NN denotes <
T13864 257-262 NN denotes level
T13863 253-256 NNP denotes CRP
T13862 251-252 , denotes ,
T13861 242-251 NN denotes remission
T13860 239-241 IN denotes in
T13859 238-239 -LRB- denotes (
T13858 230-237 NN denotes disease
T13857 221-229 JJ denotes inactive
T13856 217-220 CC denotes and
T13855 215-216 -RRB- denotes )
T13854 211-215 NN denotes mg/l
T13853 208-210 CD denotes 10
T13852 206-207 NN denotes ≥
T13851 200-205 NN denotes level
T13850 196-199 NNP denotes CRP
T13849 194-195 , denotes ,
T13848 188-194 NNS denotes joints
T13847 175-187 JJ denotes inflammatory
T13846 166-174 JJ denotes multiple
T13845 165-166 -LRB- denotes (
T13844 157-164 NN denotes disease
T13843 150-156 JJ denotes active
T13842 145-149 IN denotes with
T13841 136-144 NNS denotes patients
T13840 133-135 NNP denotes RA
T13839 130-132 IN denotes in
T13838 124-129 NN denotes IL-10
T13837 118-123 NN denotes ng/ml
T13836 116-117 CD denotes 1
T13835 113-115 IN denotes of
T13834 104-112 NN denotes presence
T13833 100-103 DT denotes the
T13832 97-99 IN denotes in
T13831 83-96 NN denotes costimulation
T13830 78-82 NNP denotes CD28
T13829 74-77 CC denotes and
T13828 70-73 NNP denotes CD3
T13827 64-69 IN denotes after
T13826 58-63 NNS denotes cells
T13825 56-57 NNP denotes T
T13824 54-55 NNP denotes +
T13823 51-54 NNP denotes CD4
T13822 48-50 IN denotes by
T13821 37-47 NN denotes production
T13820 31-36 JJ denotes IFN-γ
T13819 28-30 IN denotes of
T13818 21-27 NNS denotes levels
T13817 17-20 DT denotes the
T13816 8-16 VBD denotes compared
T13815 3-7 RB denotes thus
T13814 0-2 PRP denotes We
R7044 T13814 T13816 nsubj We,compared
R7045 T13815 T13816 advmod thus,compared
R7046 T13816 T13816 ROOT compared,compared
R7047 T13817 T13818 det the,levels
R7048 T13818 T13816 dobj levels,compared
R7049 T13819 T13818 prep of,levels
R7050 T13820 T13821 compound IFN-γ,production
R7051 T13821 T13819 pobj production,of
R7052 T13822 T13821 prep by,production
R7053 T13823 T13826 compound CD4,cells
R7054 T13824 T13826 compound +,cells
R7055 T13825 T13826 compound T,cells
R7056 T13826 T13822 pobj cells,by
R7057 T13827 T13816 prep after,compared
R7058 T13828 T13831 nsubj CD3,costimulation
R7059 T13829 T13828 cc and,CD3
R7060 T13830 T13828 conj CD28,CD3
R7061 T13831 T13827 pobj costimulation,after
R7062 T13832 T13831 prep in,costimulation
R7063 T13833 T13834 det the,presence
R7064 T13834 T13832 pobj presence,in
R7065 T13835 T13834 prep of,presence
R7066 T13836 T13838 nummod 1,IL-10
R7067 T13837 T13838 compound ng/ml,IL-10
R7068 T13838 T13835 pobj IL-10,of
R7069 T13839 T13838 prep in,IL-10
R7070 T13840 T13841 compound RA,patients
R7071 T13841 T13839 pobj patients,in
R7072 T13842 T13841 prep with,patients
R7073 T13843 T13844 amod active,disease
R7074 T13844 T13842 pobj disease,with
R7075 T13845 T13844 punct (,disease
R7076 T13846 T13848 amod multiple,joints
R7077 T13847 T13848 amod inflammatory,joints
R7078 T13848 T13844 appos joints,disease
R7079 T13849 T13844 punct ",",disease
R7080 T13850 T13851 compound CRP,level
R7081 T13851 T13852 nsubj level,≥
R7082 T13852 T13831 npadvmod ≥,costimulation
R7083 T13853 T13854 nummod 10,mg/l
R7084 T13854 T13852 appos mg/l,≥
R7085 T13855 T13852 punct ),≥
R7086 T13856 T13852 cc and,≥
R7087 T13857 T13858 amod inactive,disease
R7088 T13858 T13852 conj disease,≥
R7089 T13859 T13852 punct (,≥
R7090 T13860 T13852 prep in,≥
R7091 T13861 T13860 pobj remission,in
R7092 T13862 T13852 punct ",",≥
R7093 T13863 T13864 compound CRP,level
R7094 T13864 T13852 conj level,≥
R7095 T13865 T13867 nmod <,mg/l
R7096 T13866 T13867 nummod 10,mg/l
R7097 T13867 T13864 appos mg/l,level
R7098 T13868 T13864 punct ),level
R7099 T13869 T13871 nmod [,]
R7100 T13870 T13871 nummod 26,]
R7101 T13871 T13864 nmod ],level
R7102 T13872 T13827 cc and,after
R7103 T13873 T13827 conj in,after
R7104 T13874 T13875 amod healthy,controls
R7105 T13875 T13873 pobj controls,in
R7106 T13876 T13816 punct .,compared

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T13043 37-47 Gene_expression denotes production
T13042 253-256 Protein denotes CRP
T13041 196-199 Protein denotes CRP
T13040 78-82 Protein denotes CD28
T13039 70-73 Protein denotes CD3
T13038 51-55 Protein denotes CD4+
T13037 31-36 Protein denotes IFN-γ
R6408 T13037 T13043 themeOf IFN-γ,production

test3

Id Subject Object Predicate Lexical cue
T12278 124-129 Protein denotes IL-10
T12277 78-82 Protein denotes CD28
T12276 70-73 Protein denotes CD3
T12275 51-54 Protein denotes CD4
T12274 37-47 Gene_expression denotes production
T12273 31-36 Protein denotes IFN-γ
T12226 124-129 Protein denotes IL-10
T12225 78-82 Protein denotes CD28
T12224 70-73 Protein denotes CD3
T12223 51-54 Protein denotes CD4
T12222 31-36 Protein denotes IFN-γ
R6344 T12273 T12274 themeOf IFN-γ,production

testone

Id Subject Object Predicate Lexical cue
T12161 37-47 Gene_expression denotes production
T12137 124-129 Protein denotes IL-10
T12136 78-82 Protein denotes CD28
T12135 70-73 Protein denotes CD3
T12134 51-54 Protein denotes CD4
T12133 31-36 Protein denotes IFN-γ
R6311 T12133 T12161 themeOf IFN-γ,production