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PMC:1064873 / 13339-13511 JSONTXT

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biosemtest

Id Subject Object Predicate Lexical cue
T10917 97-100 UMLS/C0020259 denotes pH
T10904 123-131 UMLS/C0017861 denotes rol, 50
T10903 38-45 UMLS/C1704765 denotes acing c
T10896 46-51 UMLS/C0007634 denotes lls i
T10890 114-117 UMLS/C1426244 denotes 10%
T10889 63-66 UMLS/C1426244 denotes ly
T10803 8-20 UMLS/C1881488 denotes ll lysates w
T10800 102-104 UMLS/C1304686 denotes 8]
T10796 114-117 UMLS/C0272170 denotes 10%
T10795 63-66 UMLS/C0272170 denotes ly
T10787 46-51 UMLS/C1136359 denotes lls i
T10776 46-51 UMLS/C1948049 denotes lls i
T10758 102-104 UMLS/C0031526 denotes 8]
T10755 102-104 UMLS/C2363150 denotes 8]
T10749 102-104 UMLS/C0450409 denotes 8]
T10747 102-104 UMLS/C0450408 denotes 8]
T10746 102-104 UMLS/C0450407 denotes 8]
T10725 46-51 UMLS/C1704653 denotes lls i
T10697 114-117 UMLS/C0037506 denotes 10%
T10696 63-66 UMLS/C0037506 denotes ly
T10691 139-153 UMLS/C0012789 denotes othreitol, 0.1
T10689 46-51 UMLS/C1269647 denotes lls i
T10685 2-7 UMLS/C0444667 denotes ole c
T10663 38-45 UMLS/C1882509 denotes acing c
T10872 26-34 UMLS/C1521827 denotes epared b
T10870 114-117 UMLS/C1419917 denotes 10%
T10869 63-66 UMLS/C1419917 denotes ly
T10864 74-80 UMLS/C0006353 denotes fer (6
T10860 123-131 UMLS/C0768477 denotes rol, 50
T10817 102-104 UMLS/C0020283 denotes 8]

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T11213 170-171 -RRB- denotes )
T11212 166-170 NN denotes blue
T11211 155-165 NN denotes bromphenol
T11210 153-154 NN denotes %
T11209 150-153 CD denotes 0.1
T11208 148-149 -COMMA- denotes ,
T11207 134-148 NN denotes dithiothreitol
T11206 131-133 NN denotes mM
T11205 128-130 CD denotes 50
T11204 126-127 -COMMA- denotes ,
T11203 118-126 NN denotes glycerol
T11202 116-117 NN denotes %
T11201 114-116 CD denotes 10
T11200 112-113 -COMMA- denotes ,
T11199 109-112 NN denotes SDS
T11198 107-108 NN denotes %
T11197 106-107 CD denotes 2
T11196 104-105 -COMMA- denotes ,
T11195 103-104 -RRB- denotes ]
T11194 100-103 CD denotes 6.8
T11193 97-99 NN denotes pH
T11192 96-97 -LRB- denotes [
T11191 87-95 NN denotes Tris–HCl
T11190 84-86 NN denotes mM
T11189 79-83 CD denotes 62.5
T11188 78-79 -LRB- denotes (
T11187 71-77 NN denotes buffer
T11186 64-70 VB denotes lysing
T11185 60-63 NN denotes SDS
T11184 57-59 NN denotes μl
T11183 53-56 CD denotes 100
T11182 50-52 IN denotes in
T11181 44-49 NN denotes cells
T11180 36-43 VB denotes placing
T11179 33-35 IN denotes by
T11178 24-32 VB denotes prepared
T11177 19-23 VB denotes were
T11176 11-18 NN denotes lysates
T11175 6-10 NN denotes cell
T11174 0-5 JJ denotes Whole
R5591 T11176 T11174 arg1Of lysates,Whole
R5592 T11176 T11175 arg1Of lysates,cell
R5593 T11176 T11177 arg1Of lysates,were
R5594 T11176 T11178 arg2Of lysates,prepared
R5595 T11178 T11177 arg2Of prepared,were
R5596 T11178 T11179 arg1Of prepared,by
R5597 T11180 T11179 arg2Of placing,by
R5598 T11180 T11182 arg1Of placing,in
R5599 T11181 T11180 arg2Of cells,placing
R5600 T11185 T11182 arg2Of SDS,in
R5601 T11185 T11183 arg1Of SDS,100
R5602 T11185 T11184 arg1Of SDS,μl
R5603 T11185 T11186 arg1Of SDS,lysing
R5604 T11187 T11186 arg2Of buffer,lysing
R5605 T11187 T11188 arg1Of buffer,(
R5606 T11189 T11190 arg1Of 62.5,mM
R5607 T11191 T11189 arg1Of Tris–HCl,62.5
R5608 T11191 T11192 arg1Of Tris–HCl,[
R5609 T11191 T11196 arg1Of Tris–HCl,","
R5610 T11193 T11192 arg2Of pH,[
R5611 T11193 T11194 arg1Of pH,6.8
R5612 T11195 T11192 arg3Of ],[
R5613 T11196 T11188 arg2Of ",",(
R5614 T11197 T11198 arg1Of 2,%
R5615 T11199 T11197 arg1Of SDS,2
R5616 T11199 T11200 arg1Of SDS,","
R5617 T11200 T11204 arg1Of ",",","
R5618 T11201 T11202 arg1Of 10,%
R5619 T11203 T11200 arg2Of glycerol,","
R5620 T11203 T11201 arg1Of glycerol,10
R5621 T11204 T11208 arg1Of ",",","
R5622 T11205 T11206 arg1Of 50,mM
R5623 T11207 T11204 arg2Of dithiothreitol,","
R5624 T11207 T11205 arg1Of dithiothreitol,50
R5625 T11208 T11196 arg2Of ",",","
R5626 T11209 T11210 arg1Of 0.1,%
R5627 T11212 T11208 arg2Of blue,","
R5628 T11212 T11209 arg1Of blue,0.1
R5629 T11212 T11211 arg1Of blue,bromphenol
R5630 T11213 T11188 arg3Of ),(

GO-CC

Id Subject Object Predicate Lexical cue
T10993 44-49 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

sentences

Id Subject Object Predicate Lexical cue
T10930 0-172 Sentence denotes Whole cell lysates were prepared by placing cells in 100 μl SDS lysing buffer (62.5 mM Tris–HCl [pH 6.8], 2% SDS, 10% glycerol, 50 mM dithiothreitol, 0.1% bromphenol blue).
T80 0-172 Sentence denotes Whole cell lysates were prepared by placing cells in 100 μl SDS lysing buffer (62.5 mM Tris–HCl [pH 6.8], 2% SDS, 10% glycerol, 50 mM dithiothreitol, 0.1% bromphenol blue).

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T11853 53-63 Protein denotes 100 μl SDS
T11847 109-127 Protein denotes SDS, 10% glycerol,
T11844 87-95 Entity denotes Tris–HCl
T11839 106-171 Entity denotes 2% SDS, 10% glycerol, 50 mM dithiothreitol, 0.1% bromphenol blue)
T11832 92-95 Entity denotes HCl
T11830 114-126 Entity denotes 10% glycerol
T11827 44-49 Entity denotes cells
T11883 64-70 Protein denotes lysing
T11880 87-95 Entity denotes Tris–HCl
T11879 97-101 Entity denotes pH 6

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T11561 171-172 . denotes .
T11560 170-171 -RRB- denotes )
T11559 166-170 JJ denotes blue
T11558 155-165 NN denotes bromphenol
T11557 153-154 NN denotes %
T11556 150-153 CD denotes 0.1
T11555 148-149 , denotes ,
T11554 134-148 NN denotes dithiothreitol
T11553 131-133 NN denotes mM
T11552 128-130 CD denotes 50
T11551 126-127 , denotes ,
T11550 118-126 NN denotes glycerol
T11549 116-117 NN denotes %
T11548 114-116 CD denotes 10
T11547 112-113 , denotes ,
T11546 109-112 NNP denotes SDS
T11545 107-108 NN denotes %
T11544 106-107 CD denotes 2
T11543 104-105 , denotes ,
T11542 103-104 NNP denotes ]
T11541 100-103 CD denotes 6.8
T11540 97-99 NNP denotes pH
T11539 96-97 NNP denotes [
T11538 92-95 NNP denotes HCl
T11537 87-91 NNP denotes Tris
T11536 84-86 NNP denotes mM
T11535 79-83 CD denotes 62.5
T11534 78-79 -LRB- denotes (
T11533 71-77 NN denotes buffer
T11532 64-70 VBG denotes lysing
T11531 60-63 NNP denotes SDS
T11530 57-59 NN denotes μl
T11529 53-56 CD denotes 100
T11528 50-52 IN denotes in
T11527 44-49 NNS denotes cells
T11526 36-43 VBG denotes placing
T11525 33-35 IN denotes by
T11524 24-32 VBN denotes prepared
T11523 19-23 VBD denotes were
T11522 11-18 NNS denotes lysates
T11521 6-10 NN denotes cell
T11520 0-5 JJ denotes Whole
R5930 T11520 T11522 amod Whole,lysates
R5931 T11521 T11522 compound cell,lysates
R5932 T11522 T11524 nsubjpass lysates,prepared
R5933 T11523 T11524 auxpass were,prepared
R5934 T11524 T11524 ROOT prepared,prepared
R5935 T11525 T11524 prep by,prepared
R5936 T11526 T11525 pcomp placing,by
R5937 T11527 T11526 dobj cells,placing
R5938 T11528 T11526 prep in,placing
R5939 T11529 T11533 nummod 100,buffer
R5940 T11530 T11533 compound μl,buffer
R5941 T11531 T11533 compound SDS,buffer
R5942 T11532 T11533 compound lysing,buffer
R5943 T11533 T11528 pobj buffer,in
R5944 T11534 T11542 punct (,]
R5945 T11535 T11537 nummod 62.5,Tris
R5946 T11536 T11537 compound mM,Tris
R5947 T11537 T11542 nmod Tris,]
R5948 T11538 T11540 compound HCl,pH
R5949 T11539 T11540 compound [,pH
R5950 T11540 T11537 appos pH,Tris
R5951 T11541 T11542 nummod 6.8,]
R5952 T11542 T11526 prep ],placing
R5953 T11543 T11542 punct ",",]
R5954 T11544 T11545 nummod 2,%
R5955 T11545 T11546 compound %,SDS
R5956 T11546 T11542 npadvmod SDS,]
R5957 T11547 T11546 punct ",",SDS
R5958 T11548 T11549 nummod 10,%
R5959 T11549 T11550 compound %,glycerol
R5960 T11550 T11546 appos glycerol,SDS
R5961 T11551 T11550 punct ",",glycerol
R5962 T11552 T11553 nummod 50,mM
R5963 T11553 T11554 compound mM,dithiothreitol
R5964 T11554 T11550 conj dithiothreitol,glycerol
R5965 T11555 T11554 punct ",",dithiothreitol
R5966 T11556 T11557 nummod 0.1,%
R5967 T11557 T11550 appos %,glycerol
R5968 T11558 T11559 compound bromphenol,blue
R5969 T11559 T11557 appos blue,%
R5970 T11560 T11559 punct ),blue
R5971 T11561 T11542 punct .,]