PMC:1064873 / 13339-13511
Annnotations
biosemtest
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T10917 | 97-100 | UMLS/C0020259 | denotes | pH |
T10904 | 123-131 | UMLS/C0017861 | denotes | rol, 50 |
T10903 | 38-45 | UMLS/C1704765 | denotes | acing c |
T10896 | 46-51 | UMLS/C0007634 | denotes | lls i |
T10890 | 114-117 | UMLS/C1426244 | denotes | 10% |
T10889 | 63-66 | UMLS/C1426244 | denotes | ly |
T10803 | 8-20 | UMLS/C1881488 | denotes | ll lysates w |
T10800 | 102-104 | UMLS/C1304686 | denotes | 8] |
T10796 | 114-117 | UMLS/C0272170 | denotes | 10% |
T10795 | 63-66 | UMLS/C0272170 | denotes | ly |
T10787 | 46-51 | UMLS/C1136359 | denotes | lls i |
T10776 | 46-51 | UMLS/C1948049 | denotes | lls i |
T10758 | 102-104 | UMLS/C0031526 | denotes | 8] |
T10755 | 102-104 | UMLS/C2363150 | denotes | 8] |
T10749 | 102-104 | UMLS/C0450409 | denotes | 8] |
T10747 | 102-104 | UMLS/C0450408 | denotes | 8] |
T10746 | 102-104 | UMLS/C0450407 | denotes | 8] |
T10725 | 46-51 | UMLS/C1704653 | denotes | lls i |
T10697 | 114-117 | UMLS/C0037506 | denotes | 10% |
T10696 | 63-66 | UMLS/C0037506 | denotes | ly |
T10691 | 139-153 | UMLS/C0012789 | denotes | othreitol, 0.1 |
T10689 | 46-51 | UMLS/C1269647 | denotes | lls i |
T10685 | 2-7 | UMLS/C0444667 | denotes | ole c |
T10663 | 38-45 | UMLS/C1882509 | denotes | acing c |
T10872 | 26-34 | UMLS/C1521827 | denotes | epared b |
T10870 | 114-117 | UMLS/C1419917 | denotes | 10% |
T10869 | 63-66 | UMLS/C1419917 | denotes | ly |
T10864 | 74-80 | UMLS/C0006353 | denotes | fer (6 |
T10860 | 123-131 | UMLS/C0768477 | denotes | rol, 50 |
T10817 | 102-104 | UMLS/C0020283 | denotes | 8] |
pmc-enju-pas
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T11213 | 170-171 | -RRB- | denotes | ) |
T11212 | 166-170 | NN | denotes | blue |
T11211 | 155-165 | NN | denotes | bromphenol |
T11210 | 153-154 | NN | denotes | % |
T11209 | 150-153 | CD | denotes | 0.1 |
T11208 | 148-149 | -COMMA- | denotes | , |
T11207 | 134-148 | NN | denotes | dithiothreitol |
T11206 | 131-133 | NN | denotes | mM |
T11205 | 128-130 | CD | denotes | 50 |
T11204 | 126-127 | -COMMA- | denotes | , |
T11203 | 118-126 | NN | denotes | glycerol |
T11202 | 116-117 | NN | denotes | % |
T11201 | 114-116 | CD | denotes | 10 |
T11200 | 112-113 | -COMMA- | denotes | , |
T11199 | 109-112 | NN | denotes | SDS |
T11198 | 107-108 | NN | denotes | % |
T11197 | 106-107 | CD | denotes | 2 |
T11196 | 104-105 | -COMMA- | denotes | , |
T11195 | 103-104 | -RRB- | denotes | ] |
T11194 | 100-103 | CD | denotes | 6.8 |
T11193 | 97-99 | NN | denotes | pH |
T11192 | 96-97 | -LRB- | denotes | [ |
T11191 | 87-95 | NN | denotes | Tris–HCl |
T11190 | 84-86 | NN | denotes | mM |
T11189 | 79-83 | CD | denotes | 62.5 |
T11188 | 78-79 | -LRB- | denotes | ( |
T11187 | 71-77 | NN | denotes | buffer |
T11186 | 64-70 | VB | denotes | lysing |
T11185 | 60-63 | NN | denotes | SDS |
T11184 | 57-59 | NN | denotes | μl |
T11183 | 53-56 | CD | denotes | 100 |
T11182 | 50-52 | IN | denotes | in |
T11181 | 44-49 | NN | denotes | cells |
T11180 | 36-43 | VB | denotes | placing |
T11179 | 33-35 | IN | denotes | by |
T11178 | 24-32 | VB | denotes | prepared |
T11177 | 19-23 | VB | denotes | were |
T11176 | 11-18 | NN | denotes | lysates |
T11175 | 6-10 | NN | denotes | cell |
T11174 | 0-5 | JJ | denotes | Whole |
R5591 | T11176 | T11174 | arg1Of | lysates,Whole |
R5592 | T11176 | T11175 | arg1Of | lysates,cell |
R5593 | T11176 | T11177 | arg1Of | lysates,were |
R5594 | T11176 | T11178 | arg2Of | lysates,prepared |
R5595 | T11178 | T11177 | arg2Of | prepared,were |
R5596 | T11178 | T11179 | arg1Of | prepared,by |
R5597 | T11180 | T11179 | arg2Of | placing,by |
R5598 | T11180 | T11182 | arg1Of | placing,in |
R5599 | T11181 | T11180 | arg2Of | cells,placing |
R5600 | T11185 | T11182 | arg2Of | SDS,in |
R5601 | T11185 | T11183 | arg1Of | SDS,100 |
R5602 | T11185 | T11184 | arg1Of | SDS,μl |
R5603 | T11185 | T11186 | arg1Of | SDS,lysing |
R5604 | T11187 | T11186 | arg2Of | buffer,lysing |
R5605 | T11187 | T11188 | arg1Of | buffer,( |
R5606 | T11189 | T11190 | arg1Of | 62.5,mM |
R5607 | T11191 | T11189 | arg1Of | Tris–HCl,62.5 |
R5608 | T11191 | T11192 | arg1Of | Tris–HCl,[ |
R5609 | T11191 | T11196 | arg1Of | Tris–HCl,"," |
R5610 | T11193 | T11192 | arg2Of | pH,[ |
R5611 | T11193 | T11194 | arg1Of | pH,6.8 |
R5612 | T11195 | T11192 | arg3Of | ],[ |
R5613 | T11196 | T11188 | arg2Of | ",",( |
R5614 | T11197 | T11198 | arg1Of | 2,% |
R5615 | T11199 | T11197 | arg1Of | SDS,2 |
R5616 | T11199 | T11200 | arg1Of | SDS,"," |
R5617 | T11200 | T11204 | arg1Of | ",","," |
R5618 | T11201 | T11202 | arg1Of | 10,% |
R5619 | T11203 | T11200 | arg2Of | glycerol,"," |
R5620 | T11203 | T11201 | arg1Of | glycerol,10 |
R5621 | T11204 | T11208 | arg1Of | ",","," |
R5622 | T11205 | T11206 | arg1Of | 50,mM |
R5623 | T11207 | T11204 | arg2Of | dithiothreitol,"," |
R5624 | T11207 | T11205 | arg1Of | dithiothreitol,50 |
R5625 | T11208 | T11196 | arg2Of | ",","," |
R5626 | T11209 | T11210 | arg1Of | 0.1,% |
R5627 | T11212 | T11208 | arg2Of | blue,"," |
R5628 | T11212 | T11209 | arg1Of | blue,0.1 |
R5629 | T11212 | T11211 | arg1Of | blue,bromphenol |
R5630 | T11213 | T11188 | arg3Of | ),( |
GO-CC
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T10993 | 44-49 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
sentences
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T10930 | 0-172 | Sentence | denotes | Whole cell lysates were prepared by placing cells in 100 μl SDS lysing buffer (62.5 mM Tris–HCl [pH 6.8], 2% SDS, 10% glycerol, 50 mM dithiothreitol, 0.1% bromphenol blue). |
T80 | 0-172 | Sentence | denotes | Whole cell lysates were prepared by placing cells in 100 μl SDS lysing buffer (62.5 mM Tris–HCl [pH 6.8], 2% SDS, 10% glycerol, 50 mM dithiothreitol, 0.1% bromphenol blue). |
bionlp-st-ge-2016-test-ihmc
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T11853 | 53-63 | Protein | denotes | 100 μl SDS |
T11847 | 109-127 | Protein | denotes | SDS, 10% glycerol, |
T11844 | 87-95 | Entity | denotes | Tris–HCl |
T11839 | 106-171 | Entity | denotes | 2% SDS, 10% glycerol, 50 mM dithiothreitol, 0.1% bromphenol blue) |
T11832 | 92-95 | Entity | denotes | HCl |
T11830 | 114-126 | Entity | denotes | 10% glycerol |
T11827 | 44-49 | Entity | denotes | cells |
T11883 | 64-70 | Protein | denotes | lysing |
T11880 | 87-95 | Entity | denotes | Tris–HCl |
T11879 | 97-101 | Entity | denotes | pH 6 |
bionlp-st-ge-2016-spacy-parsed
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T11561 | 171-172 | . | denotes | . |
T11560 | 170-171 | -RRB- | denotes | ) |
T11559 | 166-170 | JJ | denotes | blue |
T11558 | 155-165 | NN | denotes | bromphenol |
T11557 | 153-154 | NN | denotes | % |
T11556 | 150-153 | CD | denotes | 0.1 |
T11555 | 148-149 | , | denotes | , |
T11554 | 134-148 | NN | denotes | dithiothreitol |
T11553 | 131-133 | NN | denotes | mM |
T11552 | 128-130 | CD | denotes | 50 |
T11551 | 126-127 | , | denotes | , |
T11550 | 118-126 | NN | denotes | glycerol |
T11549 | 116-117 | NN | denotes | % |
T11548 | 114-116 | CD | denotes | 10 |
T11547 | 112-113 | , | denotes | , |
T11546 | 109-112 | NNP | denotes | SDS |
T11545 | 107-108 | NN | denotes | % |
T11544 | 106-107 | CD | denotes | 2 |
T11543 | 104-105 | , | denotes | , |
T11542 | 103-104 | NNP | denotes | ] |
T11541 | 100-103 | CD | denotes | 6.8 |
T11540 | 97-99 | NNP | denotes | pH |
T11539 | 96-97 | NNP | denotes | [ |
T11538 | 92-95 | NNP | denotes | HCl |
T11537 | 87-91 | NNP | denotes | Tris |
T11536 | 84-86 | NNP | denotes | mM |
T11535 | 79-83 | CD | denotes | 62.5 |
T11534 | 78-79 | -LRB- | denotes | ( |
T11533 | 71-77 | NN | denotes | buffer |
T11532 | 64-70 | VBG | denotes | lysing |
T11531 | 60-63 | NNP | denotes | SDS |
T11530 | 57-59 | NN | denotes | μl |
T11529 | 53-56 | CD | denotes | 100 |
T11528 | 50-52 | IN | denotes | in |
T11527 | 44-49 | NNS | denotes | cells |
T11526 | 36-43 | VBG | denotes | placing |
T11525 | 33-35 | IN | denotes | by |
T11524 | 24-32 | VBN | denotes | prepared |
T11523 | 19-23 | VBD | denotes | were |
T11522 | 11-18 | NNS | denotes | lysates |
T11521 | 6-10 | NN | denotes | cell |
T11520 | 0-5 | JJ | denotes | Whole |
R5930 | T11520 | T11522 | amod | Whole,lysates |
R5931 | T11521 | T11522 | compound | cell,lysates |
R5932 | T11522 | T11524 | nsubjpass | lysates,prepared |
R5933 | T11523 | T11524 | auxpass | were,prepared |
R5934 | T11524 | T11524 | ROOT | prepared,prepared |
R5935 | T11525 | T11524 | prep | by,prepared |
R5936 | T11526 | T11525 | pcomp | placing,by |
R5937 | T11527 | T11526 | dobj | cells,placing |
R5938 | T11528 | T11526 | prep | in,placing |
R5939 | T11529 | T11533 | nummod | 100,buffer |
R5940 | T11530 | T11533 | compound | μl,buffer |
R5941 | T11531 | T11533 | compound | SDS,buffer |
R5942 | T11532 | T11533 | compound | lysing,buffer |
R5943 | T11533 | T11528 | pobj | buffer,in |
R5944 | T11534 | T11542 | punct | (,] |
R5945 | T11535 | T11537 | nummod | 62.5,Tris |
R5946 | T11536 | T11537 | compound | mM,Tris |
R5947 | T11537 | T11542 | nmod | Tris,] |
R5948 | T11538 | T11540 | compound | HCl,pH |
R5949 | T11539 | T11540 | compound | [,pH |
R5950 | T11540 | T11537 | appos | pH,Tris |
R5951 | T11541 | T11542 | nummod | 6.8,] |
R5952 | T11542 | T11526 | prep | ],placing |
R5953 | T11543 | T11542 | punct | ",",] |
R5954 | T11544 | T11545 | nummod | 2,% |
R5955 | T11545 | T11546 | compound | %,SDS |
R5956 | T11546 | T11542 | npadvmod | SDS,] |
R5957 | T11547 | T11546 | punct | ",",SDS |
R5958 | T11548 | T11549 | nummod | 10,% |
R5959 | T11549 | T11550 | compound | %,glycerol |
R5960 | T11550 | T11546 | appos | glycerol,SDS |
R5961 | T11551 | T11550 | punct | ",",glycerol |
R5962 | T11552 | T11553 | nummod | 50,mM |
R5963 | T11553 | T11554 | compound | mM,dithiothreitol |
R5964 | T11554 | T11550 | conj | dithiothreitol,glycerol |
R5965 | T11555 | T11554 | punct | ",",dithiothreitol |
R5966 | T11556 | T11557 | nummod | 0.1,% |
R5967 | T11557 | T11550 | appos | %,glycerol |
R5968 | T11558 | T11559 | compound | bromphenol,blue |
R5969 | T11559 | T11557 | appos | blue,% |
R5970 | T11560 | T11559 | punct | ),blue |
R5971 | T11561 | T11542 | punct | .,] |