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PMC:1064873 / 1101-1404 JSONTXT

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LappsTest

Id Subject Object Predicate Lexical cue
T433 118-127 OCCURRENCE denotes signaling
T432 272-280 REPORTING denotes indicate
T424 229-239 OCCURRENCE denotes determined
T421 68-77 OCCURRENCE denotes contained
T418 173-182 OCCURRENCE denotes signaling
T409 240-242 country_code denotes by
T408 226-228 country_code denotes as
T341 296-301 NNS denotes cells
T340 294-295 NN denotes T
T339 292-293 NN denotes +
T338 291-292 CD denotes 4
T337 289-291 NNP denotes CD
T336 286-288 NNP denotes RA
T335 281-285 IN denotes that
T334 272-280 VBP denotes indicate
T333 264-271 NNS denotes results
T332 258-263 DT denotes These
T331 256-257 . denotes .
T330 253-256 NNP denotes PCR
T329 243-252 JJ denotes real-time
T328 240-242 IN denotes by
T327 229-239 VBN denotes determined
T326 226-228 IN denotes as
T325 224-225 , denotes ,
T324 219-224 NNS denotes cells
T323 217-218 NN denotes T
T322 215-216 NN denotes +
T321 214-215 CD denotes 4
T320 212-214 NNP denotes CD
T319 204-211 NN denotes control
T318 199-203 IN denotes with
T317 190-198 VBN denotes compared
T316 185-189 NN denotes mRNA
T315 183-184 CD denotes 3
T314 173-182 VBG denotes signaling
T313 164-172 NN denotes cytokine
T312 161-163 IN denotes of
T311 150-160 NN denotes suppressor
T310 147-149 IN denotes of
T309 140-146 NNS denotes levels
T308 134-139 JJR denotes lower
T307 130-133 CC denotes but
T306 128-129 CD denotes 1
T305 118-127 VBG denotes signaling
T304 109-117 NN denotes cytokine
T303 106-108 IN denotes of
T302 95-105 NN denotes suppressor
T301 92-94 IN denotes of
T300 85-91 NNS denotes levels
T299 78-84 JJR denotes higher
T298 68-77 VBD denotes contained
T297 59-67 NNS denotes patients
T296 56-58 NNP denotes RA
T295 51-55 IN denotes from
T294 45-50 NNS denotes cells
T293 43-44 NN denotes T
T292 41-42 NN denotes +
T291 40-41 CD denotes 4
T290 38-40 NNP denotes CD
T289 32-37 NNP denotes Blood
T288 30-31 . denotes .
T287 20-30 NN denotes production
T286 14-19 NN denotes gamma
T285 3-13 NN denotes interferon
T284 0-2 IN denotes of

biosemtest

Id Subject Object Predicate Lexical cue
T878 20-30 UMLS/C1548180 denotes production
T875 204-211 UMLS/C2587213 denotes control
T874 3-19 UP/P01581 denotes interferon gamma
T871 134-139 UMLS/C1299352 denotes lower
T870 78-84 UMLS/C1299351 denotes higher
T860 3-19 UP/Q62574 denotes interferon gamma
T855 3-19 UP/Q7TSP4 denotes interferon gamma
T852 3-19 UP/Q8SPW9 denotes interferon gamma
T849 68-77 UMLS/C0332256 denotes contained
T848 150-184 UMLS/C1426212 denotes suppressor of cytokine signaling 3
T847 264-271 UMLS/C1546471 denotes results
T843 3-19 UP/P63311 denotes interferon gamma
T837 95-129 UMLS/C1426208 denotes suppressor of cytokine signaling 1
T834 3-19 UP/P63309 denotes interferon gamma
T831 204-211 UMLS/C0332298 denotes control
T830 59-67 UMLS/C1705908 denotes patients
T825 3-19 UP/P46402 denotes interferon gamma
T822 68-77 UMLS/C2700400 denotes contained
T819 78-84 UMLS/C0205250 denotes higher
T818 134-139 UMLS/C1611820 denotes lower
T817 134-139 UMLS/C0205251 denotes lower
T816 134-139 UMLS/C0234886 denotes lower
T815 264-271 UMLS/C0332294 denotes results
T814 264-271 UMLS/C1274040 denotes results
T812 68-77 UMLS/C1549781 denotes contained
T811 3-19 UP/P07353 denotes interferon gamma
T807 3-19 UP/Q647G2 denotes interferon gamma
T804 3-19 UP/Q865Y4 denotes interferon gamma
T798 150-184 UP/O14543 denotes suppressor of cytokine signaling 3
T795 3-19 UP/Q5CCK0 denotes interferon gamma
T792 3-19 UP/P28341 denotes interferon gamma
T787 3-19 UP/Q9TV67 denotes interferon gamma
T784 3-19 UP/O77763 denotes interferon gamma
T720 150-184 UP/O88583 denotes suppressor of cytokine signaling 3
T719 3-19 UP/A4PIZ9 denotes interferon gamma
T715 3-19 UP/Q25BC0 denotes interferon gamma
T712 3-19 UP/P01580 denotes interferon gamma
T708 294-301 UMLS/C0039194 denotes T cells
T707 217-224 UMLS/C0039194 denotes T cells
T706 43-50 UMLS/C0039194 denotes T cells
T697 3-19 UP/Q1WM28 denotes interferon gamma
T694 140-146 UMLS/C0456079 denotes levels
T693 85-91 UMLS/C0456079 denotes levels
T692 32-37 UMLS/C0229664 denotes Blood
T687 190-198 UMLS/C1707455 denotes compared
T686 204-211 UMLS/C1550141 denotes control
T676 3-19 UP/O73915 denotes interferon gamma
T673 3-19 UP/Q9YGB9 denotes interferon gamma
T669 3-19 UP/P79154 denotes interferon gamma
T666 140-146 UMLS/C0441889 denotes levels
T665 85-91 UMLS/C0441889 denotes levels
T664 3-19 UP/P01579 denotes interferon gamma
T659 95-129 UP/Q9QX78 denotes suppressor of cytokine signaling 1
T653 3-19 UP/P42162 denotes interferon gamma
T646 3-19 UP/P17773 denotes interferon gamma
T643 134-139 UMLS/C1550472 denotes lower
T642 3-19 UP/P42160 denotes interferon gamma
T636 3-19 UP/O57608 denotes interferon gamma
T633 264-271 UMLS/C1280519 denotes results
T629 3-19 UP/O57603 denotes interferon gamma
T624 3-19 UP/Q2PE75 denotes interferon gamma
T621 3-19 UP/Q8MKF5 denotes interferon gamma
T603 3-19 UP/P28333 denotes interferon gamma
T600 3-19 UP/Q866Y6 denotes interferon gamma
T597 204-211 UMLS/C0009932 denotes control
T595 78-84 UMLS/C1561957 denotes higher
T594 78-84 UMLS/C1561958 denotes higher
T593 3-19 UP/Q5I6S9 denotes interferon gamma
T588 3-19 UP/Q865W6 denotes interferon gamma
T585 59-67 UMLS/C0030705 denotes patients
T579 3-19 UP/P17803 denotes interferon gamma
T575 3-19 UMLS/C0021740 denotes interferon gamma
T571 3-19 UMLS/C0021745 denotes interferon gamma
T568 3-19 UP/Q9TTB0 denotes interferon gamma
T565 59-67 UMLS/C1578479 denotes patients
T558 59-67 UMLS/C1578483 denotes patients
T554 59-67 UMLS/C1578480 denotes patients
T550 59-67 UMLS/C1578481 denotes patients
T545 59-67 UMLS/C1578486 denotes patients
T541 229-239 UMLS/C0521095 denotes determined
T540 59-67 UMLS/C1578484 denotes patients
T535 59-67 UMLS/C1578485 denotes patients
T527 32-37 UMLS/C0392895 denotes Blood
T521 272-280 UMLS/C1444656 denotes indicate
T520 134-139 UMLS/C0441994 denotes lower
T518 243-256 UMLS/C1709846 denotes real-time PCR
T514 134-139 UMLS/C1708760 denotes lower
T513 150-184 UP/Q9BEG9 denotes suppressor of cytokine signaling 3
T509 3-19 UP/Q865X1 denotes interferon gamma
T469 3-19 UP/P42161 denotes interferon gamma
T466 185-189 UMLS/C0035696 denotes mRNA
T454 95-129 UP/O35716 denotes suppressor of cytokine signaling 1
T446 95-129 UP/O15524 denotes suppressor of cytokine signaling 1
T444 150-184 UP/Q90X67 denotes suppressor of cytokine signaling 3
T440 204-211 UMLS/C1882979 denotes control
T780 3-19 UP/O57571 denotes interferon gamma
T771 204-211 UMLS/C0243148 denotes control
T770 32-37 UMLS/C0005767 denotes Blood
T767 32-37 UMLS/C0005768 denotes Blood
T763 3-19 UP/O35735 denotes interferon gamma
T758 3-19 UP/P63310 denotes interferon gamma
T752 59-67 UMLS/C1550655 denotes patients
T748 150-184 UP/Q68AM8 denotes suppressor of cytokine signaling 3
T747 204-211 UMLS/C1547100 denotes control
T743 78-84 UMLS/C1522410 denotes higher
T742 3-19 UP/P49708 denotes interferon gamma
T739 3-19 UP/Q9QXX2 denotes interferon gamma
T725 3-19 UP/Q4ZH68 denotes interferon gamma
T506 134-139 UMLS/C1619811 denotes lower
T503 3-19 UP/P30123 denotes interferon gamma
T493 134-139 UMLS/C1548802 denotes lower
T492 3-19 UP/O35497 denotes interferon gamma
T488 150-184 UP/O35718 denotes suppressor of cytokine signaling 3
T485 130-133 UMLS/C0005341 denotes but

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T1375 296-301 NN denotes cells
T1374 294-295 NN denotes T
T1373 289-293 JJ denotes CD4+
T1372 286-288 NN denotes RA
T1371 281-285 IN denotes that
T1370 272-280 VB denotes indicate
T1369 264-271 NN denotes results
T1368 258-263 DT denotes These
T1367 253-256 NN denotes PCR
T1366 243-252 JJ denotes real-time
T1365 240-242 IN denotes by
T1364 229-239 VB denotes determined
T1363 226-228 IN denotes as
T1362 224-225 -COMMA- denotes ,
T1361 219-224 NN denotes cells
T1360 217-218 NN denotes T
T1359 212-216 JJ denotes CD4+
T1358 204-211 NN denotes control
T1357 199-203 IN denotes with
T1356 190-198 VB denotes compared
T1355 185-189 NN denotes mRNA
T1354 183-184 CD denotes 3
T1353 173-182 NN denotes signaling
T1352 164-172 NN denotes cytokine
T1351 161-163 IN denotes of
T1350 150-160 NN denotes suppressor
T1349 147-149 IN denotes of
T1348 140-146 NN denotes levels
T1347 134-139 JJ denotes lower
T1346 130-133 CC denotes but
T1345 128-129 CD denotes 1
T1344 118-127 NN denotes signaling
T1343 109-117 NN denotes cytokine
T1342 106-108 IN denotes of
T1341 95-105 NN denotes suppressor
T1340 92-94 IN denotes of
T1339 85-91 NN denotes levels
T1338 78-84 JJ denotes higher
T1337 68-77 VB denotes contained
T1336 59-67 NN denotes patients
T1335 56-58 NN denotes RA
T1334 51-55 IN denotes from
T1333 45-50 NN denotes cells
T1332 43-44 NN denotes T
T1331 38-42 JJ denotes CD4+
T1330 32-37 NN denotes Blood
T1329 20-30 NN denotes production
T1328 14-19 NN denotes gamma
T1327 3-13 NN denotes interferon
T1326 0-2 IN denotes of
R226 T1329 T1326 arg2Of production,of
R227 T1329 T1327 arg1Of production,interferon
R228 T1329 T1328 arg1Of production,gamma
R229 T1333 T1330 arg1Of cells,Blood
R230 T1333 T1331 arg1Of cells,CD4+
R231 T1333 T1332 arg1Of cells,T
R232 T1333 T1334 arg1Of cells,from
R233 T1333 T1337 arg1Of cells,contained
R234 T1336 T1334 arg2Of patients,from
R235 T1336 T1335 arg1Of patients,RA
R236 T1337 T1362 arg1Of contained,","
R237 T1337 T1363 arg1Of contained,as
R238 T1339 T1338 arg1Of levels,higher
R239 T1339 T1340 arg1Of levels,of
R240 T1339 T1346 arg1Of levels,but
R241 T1341 T1340 arg2Of suppressor,of
R242 T1341 T1342 arg1Of suppressor,of
R243 T1344 T1342 arg2Of signaling,of
R244 T1344 T1343 arg1Of signaling,cytokine
R245 T1344 T1345 arg1Of signaling,1
R246 T1346 T1337 arg2Of but,contained
R247 T1348 T1346 arg2Of levels,but
R248 T1348 T1347 arg1Of levels,lower
R249 T1348 T1349 arg1Of levels,of
R250 T1348 T1356 arg1Of levels,compared
R251 T1350 T1349 arg2Of suppressor,of
R252 T1350 T1351 arg1Of suppressor,of
R253 T1355 T1351 arg2Of mRNA,of
R254 T1355 T1352 arg1Of mRNA,cytokine
R255 T1355 T1353 arg1Of mRNA,signaling
R256 T1355 T1354 arg1Of mRNA,3
R257 T1357 T1356 arg2Of with,compared
R258 T1361 T1357 arg2Of cells,with
R259 T1361 T1358 arg1Of cells,control
R260 T1361 T1359 arg1Of cells,CD4+
R261 T1361 T1360 arg1Of cells,T
R262 T1364 T1363 arg2Of determined,as
R263 T1367 T1364 arg1Of PCR,determined
R264 T1367 T1365 arg2Of PCR,by
R265 T1367 T1366 arg1Of PCR,real-time
R266 T1369 T1368 arg1Of results,These
R267 T1369 T1370 arg1Of results,indicate
R269 T1375 T1372 arg1Of cells,RA
R270 T1375 T1373 arg1Of cells,CD4+
R271 T1375 T1374 arg1Of cells,T

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T988 3-19 Protein denotes interferon gamma
T989 38-41 Protein denotes CD4
T990 95-129 Protein denotes suppressor of cytokine signaling 1
T991 150-184 Protein denotes suppressor of cytokine signaling 3
T992 212-215 Protein denotes CD4
T993 289-292 Protein denotes CD4

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T1039 3-19 http://www.uniprot.org/uniprot/P01579 denotes interferon gamma
T1046 38-41 http://www.uniprot.org/uniprot/P01730 denotes CD4
T1047 212-215 http://www.uniprot.org/uniprot/P01730 denotes CD4
T1048 289-292 http://www.uniprot.org/uniprot/P01730 denotes CD4

GO-BP

Id Subject Object Predicate Lexical cue
T901 173-182 http://purl.obolibrary.org/obo/GO_0023052 denotes signaling
T900 118-127 http://purl.obolibrary.org/obo/GO_0023052 denotes signaling
T897 3-30 http://purl.obolibrary.org/obo/GO_0032689 denotes interferon gamma production
T895 3-30 http://purl.obolibrary.org/obo/GO_0032649 denotes interferon gamma production
T893 3-30 http://purl.obolibrary.org/obo/GO_0032609 denotes interferon gamma production
T891 3-30 http://purl.obolibrary.org/obo/GO_0032729 denotes interferon gamma production

GO-CC

Id Subject Object Predicate Lexical cue
T1022 296-301 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T1021 219-224 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T1020 45-50 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

GO-MF

Id Subject Object Predicate Lexical cue
T1008 3-19 http://purl.obolibrary.org/obo/GO_0005133 denotes interferon gamma

sentences

Id Subject Object Predicate Lexical cue
T888 32-257 Sentence denotes Blood CD4+ T cells from RA patients contained higher levels of suppressor of cytokine signaling 1 but lower levels of suppressor of cytokine signaling 3 mRNA compared with control CD4+ T cells, as determined by real-time PCR.
T8 32-257 Sentence denotes Blood CD4+ T cells from RA patients contained higher levels of suppressor of cytokine signaling 1 but lower levels of suppressor of cytokine signaling 3 mRNA compared with control CD4+ T cells, as determined by real-time PCR.

simple1

Id Subject Object Predicate Lexical cue
T1143 3-19 Protein denotes interferon gamma
T1144 38-41 Protein denotes CD4
T1145 95-129 Protein denotes suppressor of cytokine signaling 1
T1146 150-184 Protein denotes suppressor of cytokine signaling 3
T1147 212-215 Protein denotes CD4
T1148 289-292 Protein denotes CD4

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T1961 20-30 Gene_expression denotes production
T1945 289-292 Protein denotes CD4
T1944 212-215 Protein denotes CD4
T1943 150-184 Protein denotes suppressor of cytokine signaling 3
T1942 95-129 Protein denotes suppressor of cytokine signaling 1
T1941 38-41 Protein denotes CD4
T1940 3-19 Protein denotes interferon gamma
R636 T1940 T1961 themeOf interferon gamma,production

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T1458 20-30 Gene_expression denotes production
T1441 289-292 Protein denotes CD4
T1440 212-215 Protein denotes CD4
T1439 150-184 Protein denotes suppressor of cytokine signaling 3
T1438 95-129 Protein denotes suppressor of cytokine signaling 1
T1437 38-41 Protein denotes CD4
T1436 3-19 Protein denotes interferon gamma
R325 T1436 T1458 themeOf interferon gamma,production

DLUT931

Id Subject Object Predicate Lexical cue
T1502 20-30 Gene_expression denotes production
T1486 289-292 Protein denotes CD4
T1485 212-215 Protein denotes CD4
T1484 150-184 Protein denotes suppressor of cytokine signaling 3
T1483 95-129 Protein denotes suppressor of cytokine signaling 1
T1482 38-41 Protein denotes CD4
T1481 3-19 Protein denotes interferon gamma
R341 T1481 T1502 themeOf interferon gamma,production

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T1899 150-224 Protein denotes suppressor of cytokine signaling 3 mRNA compared with control CD4+ T cells
T1898 38-50 Entity denotes CD4+ T cells
T1890 95-129 Protein denotes suppressor of cytokine signaling 1
T1888 286-288 Protein denotes RA
T1882 199-224 Entity denotes with control CD4+ T cells
T1869 56-58 Protein denotes RA
T1865 240-256 Protein denotes by real-time PCR
T1863 286-301 Entity denotes RA CD4+ T cells
T1862 150-184 Protein denotes suppressor of cytokine signaling 3

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T1785 296-301 NNS denotes cells
T1784 294-295 NNP denotes T
T1783 292-293 VBD denotes +
T1782 289-292 NNP denotes CD4
T1781 286-288 NNP denotes RA
T1780 281-285 IN denotes that
T1779 272-280 VBP denotes indicate
T1778 264-271 NNS denotes results
T1777 258-263 DT denotes These
T1776 256-257 . denotes .
T1775 253-256 NNP denotes PCR
T1774 243-252 JJ denotes real-time
T1773 240-242 IN denotes by
T1772 229-239 VBN denotes determined
T1771 226-228 IN denotes as
T1770 224-225 , denotes ,
T1769 219-224 NNS denotes cells
T1768 217-218 NNP denotes T
T1767 215-216 NNP denotes +
T1766 212-215 NNP denotes CD4
T1765 204-211 NN denotes control
T1764 199-203 IN denotes with
T1763 190-198 VBN denotes compared
T1762 185-189 NNP denotes mRNA
T1761 183-184 CD denotes 3
T1760 173-182 VBG denotes signaling
T1759 164-172 NN denotes cytokine
T1758 161-163 IN denotes of
T1757 150-160 NN denotes suppressor
T1756 147-149 IN denotes of
T1755 140-146 NNS denotes levels
T1754 134-139 JJR denotes lower
T1753 130-133 CC denotes but
T1752 128-129 CD denotes 1
T1751 118-127 VBG denotes signaling
T1750 109-117 NN denotes cytokine
T1749 106-108 IN denotes of
T1748 95-105 NN denotes suppressor
T1747 92-94 IN denotes of
T1746 85-91 NNS denotes levels
T1745 78-84 JJR denotes higher
T1744 68-77 VBD denotes contained
T1743 59-67 NNS denotes patients
T1742 56-58 NNP denotes RA
T1741 51-55 IN denotes from
T1740 45-50 NNS denotes cells
T1739 43-44 NNP denotes T
T1738 41-42 VBD denotes +
T1737 38-41 NNP denotes CD4
T1736 32-37 NNP denotes Blood
T1735 30-31 . denotes .
T1734 20-30 NN denotes production
T1733 14-19 NN denotes gamma
T1732 3-13 NN denotes interferon
T1731 0-2 IN denotes of
R505 T1732 T1734 compound interferon,production
R506 T1733 T1734 compound gamma,production
R507 T1734 T1731 pobj production,of
R509 T1736 T1737 compound Blood,CD4
R510 T1737 T1738 nsubj CD4,+
R511 T1738 T1738 ROOT +,+
R512 T1739 T1740 compound T,cells
R513 T1740 T1738 dobj cells,+
R514 T1741 T1738 prep from,+
R515 T1742 T1743 compound RA,patients
R516 T1743 T1741 pobj patients,from
R517 T1744 T1738 conj contained,+
R518 T1745 T1746 amod higher,levels
R519 T1746 T1744 dobj levels,contained
R520 T1747 T1746 prep of,levels
R521 T1748 T1747 pobj suppressor,of
R522 T1749 T1748 prep of,suppressor
R523 T1750 T1749 pobj cytokine,of
R524 T1751 T1746 acl signaling,levels
R525 T1752 T1755 nummod 1,levels
R526 T1753 T1752 cc but,1
R527 T1754 T1752 conj lower,1
R528 T1755 T1751 dobj levels,signaling
R529 T1756 T1755 prep of,levels
R530 T1757 T1756 pobj suppressor,of
R531 T1758 T1757 prep of,suppressor
R532 T1759 T1758 pobj cytokine,of
R533 T1760 T1755 acl signaling,levels
R534 T1761 T1762 nummod 3,mRNA
R535 T1762 T1760 dobj mRNA,signaling
R536 T1763 T1762 prep compared,mRNA
R537 T1764 T1763 prep with,compared
R538 T1765 T1764 pobj control,with
R539 T1766 T1769 compound CD4,cells
R540 T1767 T1769 compound +,cells
R541 T1768 T1769 compound T,cells
R542 T1769 T1765 dobj cells,control
R543 T1770 T1744 punct ",",contained
R544 T1771 T1772 mark as,determined
R545 T1772 T1744 advcl determined,contained
R546 T1773 T1772 agent by,determined
R547 T1774 T1775 amod real-time,PCR
R548 T1775 T1773 pobj PCR,by
R549 T1776 T1738 punct .,+
R550 T1777 T1778 det These,results
R551 T1778 T1779 nsubj results,indicate
R552 T1779 T1779 ROOT indicate,indicate
R554 T1781 T1782 compound RA,CD4
R557 T1784 T1785 compound T,cells

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T1113 3-19 Protein denotes interferon gamma
T1114 20-30 Gene_expression denotes production
T1117 38-42 Protein denotes CD4+
T1118 150-189 Protein denotes suppressor of cytokine signaling 3 mRNA
T1119 212-216 Protein denotes CD4+
T1120 289-292 Protein denotes CD4
R661 T1113 T1114 themeOf interferon gamma,production

testone

Id Subject Object Predicate Lexical cue
T74 20-30 Gene_expression denotes production
T58 289-292 Protein denotes CD4
T57 212-215 Protein denotes CD4
T56 150-184 Protein denotes suppressor of cytokine signaling 3
T55 95-129 Protein denotes suppressor of cytokine signaling 1
T54 38-41 Protein denotes CD4
T53 3-19 Protein denotes interferon gamma
R11 T53 T74 themeOf interferon gamma,production