CORD-19:fec0c97b9bdc012b76f082b8bcd6ba0efbb4f5c3 / 12365-12726 JSONTXT

{"project":"CORD-19-Sentences","denotations":[{"id":"TextSentencer_T84","span":{"begin":0,"end":361},"obj":"Sentence"},{"id":"TextSentencer_T84","span":{"begin":0,"end":361},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"We used the evcouplings pipeline 29 to generate a jackhmmer 30 alignment of 1,207 fulllength J homologs (parameter settings: bitscore = 0.2 ; theta = 0.999; seqid_filter = 95 and 99 (thresholds for filtering highly similar sequences); minimum_sequence_coverage = 99 (require sequences to align to 99% of wild-type J protein); and minimum_sequence_coverage = 50."}