BB-rel@ldeleger:BB-rel-23702192 JSONTXT

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bionlp-ost-19-BB-rel-train

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T1 0-99 Title denotes Clinical factors associated with development of severe-complicated Clostridium difficile infection.
T6 67-88 Microorganism denotes Clostridium difficile
T2 100-379 Paragraph denotes Clostridium difficile infection (CDI) can cause life-threatening complications. Severe-complicated CDI is characterized by hypotension, shock, sepsis, ileus, megacolon, and colon perforation. We created a model to identify clinical factors associated with severe-complicated CDI.
T7 100-121 Microorganism denotes Clostridium difficile
T8 273-278 Habitat denotes colon
T3 380-1316 Paragraph denotes We analyzed data from 1446 inpatient cases of CDI (48.6% female; median age, 62.5 years; range, 0.1-103.7 years) at the Mayo Clinic from June 28, 2007, to June 25, 2010. Patients with severe-complicated CDI (n = 487) were identified as those who required admission to the intensive care unit or colectomy, or died, within 30 days of CDI diagnosis. Logistic regression models were used to identify variables that were independently associated with the occurrence of severe-complicated CDI in 2 cohorts. One cohort comprised all hospitalized patients; the other comprised a subset of these inpatients who were residents of Olmsted County, Minnesota to assess the association of comorbid conditions with the development of severe-complicated infection in a population-based cohort. The linear combinations of variables identified by using logistic regression models provided scores to predict the risk of developing severe-complicated CDI.
T9 407-492 Habitat denotes inpatient cases of CDI (48.6% female; median age, 62.5 years; range, 0.1-103.7 years)
T10 500-511 Habitat denotes Mayo Clinic
T11 550-586 Habitat denotes Patients with severe-complicated CDI
T12 652-671 Habitat denotes intensive care unit
T13 907-928 Habitat denotes hospitalized patients
T14 907-919 Habitat denotes hospitalized
T15 968-978 Habitat denotes inpatients
T16 1001-1015 Geographical denotes Olmsted County
T17 1017-1026 Geographical denotes Minnesota
T18 1134-1157 Habitat denotes population-based cohort
T4 1317-1758 Paragraph denotes In a multivariable model that included all inpatients, increasing age, leukocyte count >15 × 10(9)/L, increase in serum level of creatinine >1.5-fold from baseline, and use of proton pump inhibitors or narcotic medications were independently associated with severe-complicated CDI. In the secondary analysis, which included only patients from Olmsted County, comorbid conditions were not significantly associated with severe-complicated CDI.
T19 1360-1370 Habitat denotes inpatients
T20 1388-1397 Habitat denotes leukocyte
T21 1431-1436 Habitat denotes serum
T22 1646-1654 Habitat denotes patients
T23 1660-1674 Geographical denotes Olmsted County
T5 1759-2080 Paragraph denotes Older age, high numbers of leukocytes in blood samples, an increased serum level of creatinine, gastric acid suppression, and use of narcotic medications were independently associated with development of severe-complicated CDI in hospitalized patients. Early aggressive monitoring and intervention could improve outcomes.
T24 1786-1796 Habitat denotes leukocytes
T25 1800-1813 Habitat denotes blood samples
T26 1828-1833 Habitat denotes serum
T28 1855-1867 Habitat denotes gastric acid
T27 1855-1862 Habitat denotes gastric
T30 1989-2010 Habitat denotes hospitalized patients
T29 1989-2001 Habitat denotes hospitalized
E1 100-121 Lives_In denotes Clostridium difficile
E2 100-121 Lives_In denotes Clostridium difficile
E3 100-121 Lives_In denotes Clostridium difficile
E4 100-121 Lives_In denotes Clostridium difficile
E5 100-121 Lives_In denotes Clostridium difficile
E6 100-121 Lives_In denotes Clostridium difficile
E7 100-121 Lives_In denotes Clostridium difficile
E8 100-121 Lives_In denotes Clostridium difficile
E9 100-121 Lives_In denotes Clostridium difficile
E10 100-121 Lives_In denotes Clostridium difficile
R1 E1 T7 Microorganism Clostridium difficile,Clostridium difficile
R2 E1 T15 Location Clostridium difficile,inpatients
R3 E2 T7 Microorganism Clostridium difficile,Clostridium difficile
R4 E2 T11 Location Clostridium difficile,Patients with severe-complicated CDI
R5 E3 T7 Microorganism Clostridium difficile,Clostridium difficile
R6 E3 T19 Location Clostridium difficile,inpatients
R7 E4 T7 Microorganism Clostridium difficile,Clostridium difficile
R8 E4 T9 Location Clostridium difficile,"inpatient cases of CDI (48.6% female; median age, 62.5 years; range, 0.1-103.7 years)"
R9 E5 T7 Microorganism Clostridium difficile,Clostridium difficile
R10 E5 T17 Location Clostridium difficile,Minnesota
R11 E6 T7 Microorganism Clostridium difficile,Clostridium difficile
R12 E6 T23 Location Clostridium difficile,Olmsted County
R13 E7 T7 Microorganism Clostridium difficile,Clostridium difficile
R14 E7 T13 Location Clostridium difficile,hospitalized patients
R15 E8 T7 Microorganism Clostridium difficile,Clostridium difficile
R16 E8 T30 Location Clostridium difficile,hospitalized patients
R17 E9 T7 Microorganism Clostridium difficile,Clostridium difficile
R18 E9 T16 Location Clostridium difficile,Olmsted County
R19 E10 T7 Microorganism Clostridium difficile,Clostridium difficile
R20 E10 T22 Location Clostridium difficile,patients