BB-rel+ner@ldeleger:BB-rel+ner-19622846 JSONTXT

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bionlp-ost-19-BB-rel-ner-train

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T1 0-94 Title denotes Detection of Staphylococcus aureus including MRSA on environmental surfaces in a jail setting.
T2 95-964 Paragraph denotes We examined jail environmental surfaces to explore whether they might serve as reservoirs of viable methicillin-resistant Staphylococcus aureus (MRSA). We swabbed 132 surfaces, inoculated primary and secondary mannitol salts and oxacillin-resistant screening agar, and used API tests to identify S. aureus and E-tests to determine methicillin/oxacillin resistance. We recovered S. aureus from 10 (7.6%) surfaces; eight (6.1%) isolates were MRSA. We ran pulsed-field gel electrophoresis on six resistant isolates and observed three patterns, one of which was identical to that identified in a previous study of inmates' nasal specimens. Finding MRSA-contaminated surfaces on a variety of environmental surfaces in the absence of an overt outbreak emphasizes that correctional facilities should have protocols for environmental cleaning as a component of MRSA prevention.
T3 13-34 Microorganism denotes Staphylococcus aureus
T4 45-49 Microorganism denotes MRSA
T5 45-49 Phenotype denotes MRSA
T6 53-93 Habitat denotes environmental surfaces in a jail setting
T7 81-85 Habitat denotes jail
T9 107-134 Habitat denotes jail environmental surfaces
T8 107-111 Habitat denotes jail
T10 195-216 Phenotype denotes methicillin-resistant
T11 217-238 Microorganism denotes Staphylococcus aureus
T12 240-244 Microorganism denotes MRSA
T13 240-244 Phenotype denotes MRSA
T14 283-319 Habitat denotes primary and secondary mannitol salts
T15 324-358 Habitat denotes oxacillin-resistant screening agar
T16 324-343 Phenotype denotes oxacillin-resistant
T17 391-400 Microorganism denotes S. aureus
T18-0 426-437 _FRAGMENT denotes methicillin
T18-1 448-458 Phenotype denotes resistance
T19 438-458 Phenotype denotes oxacillin resistance
T20 473-482 Microorganism denotes S. aureus
T21 535-539 Microorganism denotes MRSA
T22 535-539 Phenotype denotes MRSA
T23 588-597 Phenotype denotes resistant
T24 705-719 Habitat denotes inmates' nasal
T25 705-712 Habitat denotes inmates
T26 739-743 Microorganism denotes MRSA
T27 739-743 Phenotype denotes MRSA
T28 857-880 Habitat denotes correctional facilities
T29 948-952 Microorganism denotes MRSA
T30 948-952 Phenotype denotes MRSA
E1 13-34 Lives_In denotes Staphylococcus aureus
E2 13-34 Lives_In denotes Staphylococcus aureus
E4 45-49 Lives_In denotes MRSA
E5 45-49 Lives_In denotes MRSA
E3 45-49 Exhibits denotes MRSA
E6 217-238 Exhibits denotes Staphylococcus aureus
E7 240-244 Exhibits denotes MRSA
E9 473-482 Lives_In denotes S. aureus
E10 473-482 Lives_In denotes S. aureus
E11 473-482 Lives_In denotes S. aureus
E12 473-482 Lives_In denotes S. aureus
E8 473-482 Exhibits denotes S. aureus
E14 535-539 Lives_In denotes MRSA
E15 535-539 Lives_In denotes MRSA
E16 535-539 Lives_In denotes MRSA
E17 535-539 Lives_In denotes MRSA
E18 535-539 Lives_In denotes MRSA
E19 535-539 Lives_In denotes MRSA
E13 535-539 Exhibits denotes MRSA
E21 739-743 Lives_In denotes MRSA
E20 739-743 Exhibits denotes MRSA
E23 948-952 Lives_In denotes MRSA
E22 948-952 Exhibits denotes MRSA
R12 E6 T10 Property Staphylococcus aureus,methicillin-resistant
R1 E1 T3 Microorganism Staphylococcus aureus,Staphylococcus aureus
R2 E1 T7 Location Staphylococcus aureus,jail
R3 E2 T3 Microorganism Staphylococcus aureus,Staphylococcus aureus
R4 E2 T6 Location Staphylococcus aureus,environmental surfaces in a jail setting
R5 E4 T4 Microorganism MRSA,MRSA
R6 E4 T6 Location MRSA,environmental surfaces in a jail setting
R7 E5 T4 Microorganism MRSA,MRSA
R8 E5 T7 Location MRSA,jail
R9 E3 T4 Microorganism MRSA,MRSA
R10 E3 T5 Property MRSA,MRSA
R11 E6 T11 Microorganism Staphylococcus aureus,Staphylococcus aureus
R13 E7 T12 Microorganism MRSA,MRSA
R14 E7 T13 Property MRSA,MRSA
R15 E9 T20 Microorganism S. aureus,S. aureus
R16 E9 T15 Location S. aureus,oxacillin-resistant screening agar
R17 E10 T20 Microorganism S. aureus,S. aureus
R18 E10 T8 Location S. aureus,jail
R19 E11 T20 Microorganism S. aureus,S. aureus
R20 E11 T9 Location S. aureus,jail environmental surfaces
R21 E12 T20 Microorganism S. aureus,S. aureus
R22 E12 T14 Location S. aureus,primary and secondary mannitol salts
R23 E8 T20 Microorganism S. aureus,S. aureus
R24 E8 T22 Property S. aureus,MRSA
R25 E14 T21 Microorganism MRSA,MRSA
R26 E14 T24 Location MRSA,inmates' nasal
R27 E15 T21 Microorganism MRSA,MRSA
R28 E15 T9 Location MRSA,jail environmental surfaces
R29 E16 T21 Microorganism MRSA,MRSA
R30 E16 T14 Location MRSA,primary and secondary mannitol salts
R31 E17 T21 Microorganism MRSA,MRSA
R32 E17 T15 Location MRSA,oxacillin-resistant screening agar
R33 E18 T21 Microorganism MRSA,MRSA
R34 E18 T25 Location MRSA,inmates
R35 E19 T21 Microorganism MRSA,MRSA
R36 E19 T8 Location MRSA,jail
R37 E13 T21 Microorganism MRSA,MRSA
R38 E13 T22 Property MRSA,MRSA
R39 E21 T26 Microorganism MRSA,MRSA
R40 E21 T28 Location MRSA,correctional facilities
R41 E20 T26 Microorganism MRSA,MRSA
R42 E20 T27 Property MRSA,MRSA
R43 E23 T29 Microorganism MRSA,MRSA
R44 E23 T28 Location MRSA,correctional facilities
R45 E22 T29 Microorganism MRSA,MRSA
R46 E22 T30 Property MRSA,MRSA
C-T18-0 T18-1 T18-0 _lexicallyChainedTo resistance,methicillin