BB-norm@ldeleger:BB-norm-F-25036636-003 JSONTXT

{"target":"http://pubannotation.org/docs/sourcedb/BB-norm@ldeleger/sourceid/BB-norm-F-25036636-003","sourcedb":"BB-norm@ldeleger","sourceid":"BB-norm-F-25036636-003","text":"However, to date, a cheese-associated mgl gene has only been identified in Brevibacterium linens ( Amarita et al., 2004, Monnet et al., 2010 and Schröder et al., 2011). Our metagenomic sequencing uncovered previously undescribed mgl sequences with high sequence similarity to various γ-Proteobacteria in cheeses from both Europe and North America ( Table S4B). Several of these previously undescribed mgl sequences belonged to Pseudoalteromonas spp. ( Figures 4C and S4B). We mapped metagenomic reads from three cheeses in which Pseudoalteromonas was abundant to the reference genome of Pseudoalteromonas haloplanktis (99.5% pairwise identity, Table S4C). Additionally, Pseudoalteromonas is known to have many cold-adapted enzymes that function in the polar seawater where this bacterium typically grows ( Médigue et al., 2005).\n","tracks":[{"project":"bionlp-ost-19-BB-norm-dev","denotations":[{"id":"T1","span":{"begin":20,"end":26},"obj":"Habitat"},{"id":"T2","span":{"begin":75,"end":96},"obj":"Microorganism"},{"id":"T3","span":{"begin":284,"end":300},"obj":"Microorganism"},{"id":"T4","span":{"begin":304,"end":311},"obj":"Habitat"},{"id":"T5","span":{"begin":427,"end":449},"obj":"Microorganism"},{"id":"T6","span":{"begin":512,"end":519},"obj":"Habitat"},{"id":"T7","span":{"begin":529,"end":546},"obj":"Microorganism"},{"id":"T8","span":{"begin":587,"end":617},"obj":"Microorganism"},{"id":"T9","span":{"begin":671,"end":688},"obj":"Microorganism"},{"id":"T10","span":{"begin":711,"end":723},"obj":"Phenotype"},{"id":"T11","span":{"begin":753,"end":767},"obj":"Habitat"}],"attributes":[{"id":"A10","pred":"OntoBiotope","subj":"T10","obj":"OBT:002982"},{"id":"A4","pred":"OntoBiotope","subj":"T4","obj":"OBT:001480"},{"id":"A11","pred":"OntoBiotope","subj":"T11","obj":"OBT:003105"},{"id":"A1","pred":"OntoBiotope","subj":"T1","obj":"OBT:001480"},{"id":"A9","pred":"NCBI_Taxonomy","subj":"T9","obj":"53246"},{"id":"A7","pred":"NCBI_Taxonomy","subj":"T7","obj":"53246"},{"id":"A3","pred":"NCBI_Taxonomy","subj":"T3","obj":"1236"},{"id":"A8","pred":"NCBI_Taxonomy","subj":"T8","obj":"228"},{"id":"A6","pred":"OntoBiotope","subj":"T6","obj":"OBT:001480"},{"id":"A5","pred":"NCBI_Taxonomy","subj":"T5","obj":"53246"},{"id":"A2","pred":"NCBI_Taxonomy","subj":"T2","obj":"1703"},{"subj":"T1","pred":"source","obj":"bionlp-ost-19-BB-norm-dev"},{"subj":"T2","pred":"source","obj":"bionlp-ost-19-BB-norm-dev"},{"subj":"T3","pred":"source","obj":"bionlp-ost-19-BB-norm-dev"},{"subj":"T4","pred":"source","obj":"bionlp-ost-19-BB-norm-dev"},{"subj":"T5","pred":"source","obj":"bionlp-ost-19-BB-norm-dev"},{"subj":"T6","pred":"source","obj":"bionlp-ost-19-BB-norm-dev"},{"subj":"T7","pred":"source","obj":"bionlp-ost-19-BB-norm-dev"},{"subj":"T8","pred":"source","obj":"bionlp-ost-19-BB-norm-dev"},{"subj":"T9","pred":"source","obj":"bionlp-ost-19-BB-norm-dev"},{"subj":"T10","pred":"source","obj":"bionlp-ost-19-BB-norm-dev"},{"subj":"T11","pred":"source","obj":"bionlp-ost-19-BB-norm-dev"}]}],"config":{"attribute types":[{"pred":"source","value type":"selection","values":[{"id":"bionlp-ost-19-BB-norm-dev","color":"#ecb593","default":true}]}]}}