BB-norm@ldeleger:BB-norm-16458564 / 587-2024 JSONTXT

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bionlp-ost-19-BB-norm-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue NCBI_Taxonomy OntoBiotope
T18 231-243 Microorganism denotes Shigella spp 620
T4 0-1437 Paragraph denotes Of those with diarrhea, 40.9% were less than one year old and 71.0% were less than two years old. A potential pathogen was identified in 67.3% of children with diarrhea. They were group A rotavirus, diarrheagenic Escherichia coli, Shigella spp, and enterotoxigenic Bacteroides fragilis, with prevalences of 46.7%, 22.5%, 4.7%, and 7.3%, respectively. No Salmonella spp or Vibrio cholerae were isolated. Rotavirus and diarrheagenic E. coli were predominant in children less than two years of age, while Shigella spp, and enterotoxigenic B. fragilis were mostly seen in the older children. Diarrheagenic E. coli and Shigella spp showed high prevalence of resistance to ampicillin, chloramphenicol, and to trimethoprim/sulfamethoxazole. Children attending the hospitals had fever (43.6%), vomiting (53.8%), and dehydration (82.6%). Watery stool was predominant with a prevalence of 66.4%, followed by mucous stool (21.0%). The mean episodes of stools per day was seven, ranging from two to 23 episodes. Before attending hospitals, 162/587 (27.6%) children had been given antibiotics. Overall, more children got diarrhea in (i) poor families; (ii) families where piped water and a latrine were lacking; (iii) families where mothers washed their hands less often before feeding the children; (iv) families where mothers had a low level of education; (v) families where information on health and sanitation less often reached their households.
T13 110-118 Phenotype denotes pathogen OBT:002806
T14 146-168 Habitat denotes children with diarrhea OBT:003188|OBT:003156
T15 180-197 Microorganism denotes group A rotavirus 28875
T16 199-212 Phenotype denotes diarrheagenic OBT:002806
T17 213-229 Microorganism denotes Escherichia coli 562
T19 249-264 Phenotype denotes enterotoxigenic OBT:002806
T20 265-285 Microorganism denotes Bacteroides fragilis 817
T21 354-368 Microorganism denotes Salmonella spp 590
T22 372-387 Microorganism denotes Vibrio cholerae 666
T23 403-412 Microorganism denotes Rotavirus 10912
T24 417-430 Phenotype denotes diarrheagenic OBT:002806
T25 431-438 Microorganism denotes E. coli 562
T26 459-494 Habitat denotes children less than two years of age OBT:003156|OBT:003184
T27 502-514 Microorganism denotes Shigella spp 620
T28 520-535 Phenotype denotes enterotoxigenic OBT:002806
T29 536-547 Microorganism denotes B. fragilis 817
T30 572-586 Habitat denotes older children OBT:003156|OBT:003188
T31 588-601 Phenotype denotes Diarrheagenic OBT:002806
T32 602-609 Microorganism denotes E. coli 562
T33 614-626 Microorganism denotes Shigella spp 620
T35 653-677 Phenotype denotes resistance to ampicillin OBT:002762
T36-0 653-666 _FRAGMENT denotes resistance to OBT:002772
T36-1 679-694 Phenotype denotes chloramphenicol
T34-0 653-666 _FRAGMENT denotes resistance to OBT:002844
T34-1 703-732 Phenotype denotes trimethoprim/sulfamethoxazole
T37 734-766 Habitat denotes Children attending the hospitals OBT:003269|OBT:003188
T38 757-766 Habitat denotes hospitals OBT:002714
T39 829-841 Habitat denotes Watery stool OBT:001102
T40 898-910 Habitat denotes mucous stool OBT:001102
T41 898-904 Habitat denotes mucous OBT:001220
T42 941-947 Habitat denotes stools OBT:001102
T43 1017-1026 Habitat denotes hospitals OBT:002714
T44 1044-1052 Habitat denotes children OBT:003188|OBT:003269
T45 1095-1103 Habitat denotes children OBT:003188|OBT:003269
T46 1159-1170 Habitat denotes piped water OBT:001530
T47 1177-1184 Habitat denotes latrine OBT:000702
T48 1220-1227 Habitat denotes mothers OBT:003491
T49 1277-1285 Habitat denotes children OBT:003188|OBT:003269
T50 1307-1314 Habitat denotes mothers OBT:003491
C-T36-0 T36-1 T36-0 _lexicallyChainedTo chloramphenicol,resistance to
C-T34-0 T34-1 T34-0 _lexicallyChainedTo trimethoprim/sulfamethoxazole,resistance to