BB-norm+ner@ldeleger:BB-norm+ner-25098305 JSONTXT

Annnotations TAB JSON ListView MergeView

bionlp-ost-19-BB-norm-ner-train

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue NCBI_Taxonomy OntoBiotope
T1 0-135 Title denotes Surveillance for upper respiratory tract disease and Mycoplasma in free-ranging gopher tortoises (Gopherus polyphemus) in Georgia, USA.
T2 136-1742 Paragraph denotes Abstract Upper respiratory tract disease (URTD) in the gopher tortoise (Gopherus polyphemus) is highly contagious and has been implicated in the reduction of populations throughout the range. With the exception of a few limited studies, the prevalence of URTD in Georgia, USA tortoise populations is poorly known. We found that exposure to Mycoplasma agassizii and Mycoplasma testudineum, associated with URTD, varied geographically among 11 Georgia tortoise populations. The prevalence of antibodies to M. agassizii in individual populations was either very low (0-3%, n=7 populations) or very high (96-100%, n=4 populations), whereas there was variation in the prevalence of antibodies to M. testudineum among populations (20-61%, n=10) with only one site being negative. Five sites had tortoises with antibodies to both pathogens, and these were the only sites where we observed tortoises with clinical signs consistent with URTD. We did not find tortoises with clinical signs of URTD at sites with tortoises with antibodies only to M. testudineum, which provides evidence that this organism may be of limited pathogenicity for gopher tortoises. Collectively, these data indicate that both M. agassizii and M. testudineum are present in Georgia populations of gopher tortoises and that clinical disease is apparent in populations where both pathogens are present. Additional research is needed to better understand the role of these two pathogens, and other potential pathogens, in the overall health of tortoise populations, especially if future conservation efforts involve translocation of tortoises.
T3 17-40 Habitat denotes upper respiratory tract OBT:000936
T4 53-63 Microorganism denotes Mycoplasma 2093
T5 67-96 Habitat denotes free-ranging gopher tortoises OBT:001828
T6 98-117 Habitat denotes Gopherus polyphemus OBT:001828
T7 145-168 Habitat denotes Upper respiratory tract OBT:000936
T8 191-206 Habitat denotes gopher tortoise OBT:001828
T9 208-227 Habitat denotes Gopherus polyphemus OBT:001828
T10 399-432 Habitat denotes Georgia, USA tortoise populations OBT:001828
T11 476-496 Microorganism denotes Mycoplasma agassizii 33922
T12 501-523 Microorganism denotes Mycoplasma testudineum 244584
T13 578-606 Habitat denotes Georgia tortoise populations OBT:001828
T14 640-652 Microorganism denotes M. agassizii 33922
T15 827-841 Microorganism denotes M. testudineum 244584
T16 925-934 Habitat denotes tortoises OBT:001828
T17 959-968 Phenotype denotes pathogens OBT:002669
T18 1018-1027 Habitat denotes tortoises OBT:001828
T19 1086-1095 Habitat denotes tortoises OBT:001828
T20 1138-1147 Habitat denotes tortoises OBT:001828
T21 1172-1186 Microorganism denotes M. testudineum 244584
T22 1249-1262 Phenotype denotes pathogenicity OBT:002669
T23 1267-1283 Habitat denotes gopher tortoises OBT:001828
T24 1329-1341 Microorganism denotes M. agassizii 33922
T25 1346-1360 Microorganism denotes M. testudineum 244584
T26 1376-1415 Habitat denotes Georgia populations of gopher tortoises OBT:001828
T27 1480-1489 Phenotype denotes pathogens OBT:002669
T28 1576-1585 Phenotype denotes pathogens OBT:002669
T29 1607-1616 Phenotype denotes pathogens OBT:002669
T30 1643-1663 Habitat denotes tortoise populations OBT:001828
T31 1732-1741 Habitat denotes tortoises OBT:001828