BB-norm+ner@ldeleger:BB-norm+ner-21270066 JSONTXT

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bionlp-ost-19-BB-norm-ner-dev

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Id Subject Object Predicate Lexical cue NCBI_Taxonomy OntoBiotope
T1 0-94 Title denotes Lymphogranuloma venereum presenting as perianal ulceration: an emerging clinical presentation?
T2 95-1145 Paragraph denotes An outbreak of lymphogranuloma venereum (LGV) infection has been recognised in the UK since 2004, predominantly affecting HIV-positive men who have sex with men (MSM). Patients typically present with proctitis symptoms. The prevalence of rectal LGV in MSM attending sexually transmitted infection clinics in London is estimated at 1%. Health Protection Agency surveillance has shown a decrease in anorectal manifestations despite little demographic change. Two cases of HIV-infected patients presenting with isolated perianal ulcer disease are reported here. Both cases were confirmed to have rectal Chlamydia trachomatis-specific DNA of an LGV associated serovar. As presentations of LGV diversify, further education and surveillance are needed in order to reduce transmission and prevent long-term complications. A strong argument already exists for the incorporation of chlamydia nucleic acid amplification tests in the management of MSM with proctitis; this paper provides evidence that this should be extended to MSM with perianal ulcer disease.
T4 39-58 Habitat denotes perianal ulceration OBT:000933
T3 39-47 Habitat denotes perianal OBT:000988
T5 217-255 Habitat denotes HIV-positive men who have sex with men OBT:003156|OBT:003451
T6 217-220 Microorganism denotes HIV 12721
T7 252-255 Habitat denotes men OBT:003451
T8 257-260 Habitat denotes MSM OBT:003451|OBT:003156
T9 263-271 Habitat denotes Patients OBT:003451|OBT:003269
T10 333-339 Habitat denotes rectal OBT:001738
T11 347-399 Habitat denotes MSM attending sexually transmitted infection clinics OBT:003451|OBT:003269
T12 361-399 Habitat denotes sexually transmitted infection clinics OBT:002694
T13 492-501 Habitat denotes anorectal OBT:000988|OBT:001738
T14 565-634 Habitat denotes HIV-infected patients presenting with isolated perianal ulcer disease OBT:003451|OBT:003269
T15 565-568 Microorganism denotes HIV 35274
T16 612-626 Habitat denotes perianal ulcer OBT:000933
T17 612-620 Habitat denotes perianal OBT:000988
T18 688-694 Habitat denotes rectal OBT:001738
T19 695-716 Microorganism denotes Chlamydia trachomatis 813
T20 968-977 Microorganism denotes chlamydia 813
T21 1032-1050 Habitat denotes MSM with proctitis OBT:003451|OBT:003156
T22 1113-1144 Habitat denotes MSM with perianal ulcer disease OBT:003451|OBT:003156
T24 1122-1136 Habitat denotes perianal ulcer OBT:000933
T23 1122-1130 Habitat denotes perianal OBT:000988