BB-norm+ner@ldeleger:BB-norm+ner-19075662 JSONTXT

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bionlp-ost-19-BB-norm-ner-train

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue NCBI_Taxonomy OntoBiotope
T1 0-52 Title denotes Prevention and treatment of Staphylococcus biofilms.
T2 53-866 Paragraph denotes Staphylococcus growth on medical devices represents a common occurrence that can lead to serious illness and death. Biomaterial-associated infection, mostly caused by Staphylococcus epidermidis and Staphylococcus aureus, is fairly complicated by the organism' development of a biofilm, which provides a microenvironment that protects from attack by the host immune system and antibiotics. In this review we present recent insights regarding S. aureus and S. epidermidis structural and functional factors that are effective in biofilm development and describe the regulation of their expression. On the basis of the knowledge gained, we also present the potential and limits of current biochemical and biophysical strategies aimed at preventing biofilm formation or at the treatment of established mature biofilms.
T3 28-42 Microorganism denotes Staphylococcus 1279
T4 43-51 Habitat denotes biofilms OBT:000054
T5 53-67 Microorganism denotes Staphylococcus 1279
T6 78-93 Habitat denotes medical devices OBT:000108
T7 169-180 Habitat denotes Biomaterial OBT:000108
T8 220-246 Microorganism denotes Staphylococcus epidermidis 1282
T9 251-272 Microorganism denotes Staphylococcus aureus 1280
T10 313-337 Phenotype denotes development of a biofilm OBT:001444
T11 330-337 Habitat denotes biofilm OBT:000054
T12 406-424 Habitat denotes host immune system OBT:000321
T13 494-503 Microorganism denotes S. aureus 1280
T14 508-522 Microorganism denotes S. epidermidis 1282
T16 579-598 Phenotype denotes biofilm development OBT:001444
T15 579-586 Habitat denotes biofilm OBT:000054
T18 797-814 Phenotype denotes biofilm formation OBT:001444
T17 797-804 Habitat denotes biofilm OBT:000054
T19 838-865 Habitat denotes established mature biofilms OBT:000054