BB-norm+ner@ldeleger:BB-norm+ner-18094887 / 70-1458 JSONTXT

Annnotations TAB JSON ListView MergeView

bionlp-ost-19-BB-norm-ner-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue NCBI_Taxonomy OntoBiotope
T2 0-1388 Paragraph denotes This study investigated rickettsial infection in animals, humans, ticks, and fleas collected in five areas of the state of São Paulo. Eight flea species (Adoratopsylla antiquorum antiquorum, Ctenocephalides felis felis, Polygenis atopus, Polygenis rimatus, Polygenis roberti roberti, Polygenis tripus, Rhopalopsyllus lugubris, and Rhopalopsyllus lutzi lutzi), and five tick species (Amblyomma aureolatum, Amblyomma cajennense, Amblyomma dubitatum, Ixodes loricatus, and Rhipicephalus sanguineus) were collected from dogs, cats, and opossums. Rickettsia felis was the only rickettsia found infecting fleas, whereas Rickettsia bellii was the only agent infecting ticks, but no animal or human blood was shown to contain rickettsial DNA. Testing animal and human sera by indirect immunofluorescence assay against four rickettsia antigens (R. rickettsii, R. parkeri, R. felis, and R. bellii), some opossum, dog, horse, and human sera reacted to R. rickettsii with titers at least four-fold higher than to the other three rickettsial antigens. These sera were considered to have a predominant antibody response to R. rickettsii. Using the same criteria, opossum, dog, and horse sera showed predominant antibody response to R. parkeri or a very closely related genotype. Our serological results suggest that both R. rickettsii and R. parkeri infected animals and/or humans in the studied areas.
T4 24-35 Microorganism denotes rickettsial 780
T5 49-56 Habitat denotes animals OBT:000193
T6 58-64 Habitat denotes humans OBT:002488
T7 66-71 Habitat denotes ticks OBT:001821
T8 77-82 Habitat denotes fleas OBT:002034
T9 140-144 Habitat denotes flea OBT:002034
T10 154-189 Habitat denotes Adoratopsylla antiquorum antiquorum OBT:002034
T11 191-218 Habitat denotes Ctenocephalides felis felis OBT:002034
T12 220-236 Habitat denotes Polygenis atopus OBT:002034
T13 238-255 Habitat denotes Polygenis rimatus OBT:002034
T14 257-282 Habitat denotes Polygenis roberti roberti OBT:002034
T15 284-300 Habitat denotes Polygenis tripus OBT:002034
T16 302-325 Habitat denotes Rhopalopsyllus lugubris OBT:002034
T17 331-357 Habitat denotes Rhopalopsyllus lutzi lutzi OBT:002034
T18 369-373 Habitat denotes tick OBT:001821
T19 383-403 Habitat denotes Amblyomma aureolatum OBT:001821
T20 405-425 Habitat denotes Amblyomma cajennense OBT:001821
T21 427-446 Habitat denotes Amblyomma dubitatum OBT:001821
T22 448-464 Habitat denotes Ixodes loricatus OBT:001821
T23 470-494 Habitat denotes Rhipicephalus sanguineus OBT:002693
T24 516-520 Habitat denotes dogs OBT:003092
T25 522-526 Habitat denotes cats OBT:003086
T26 532-540 Habitat denotes opossums OBT:002161
T27 542-558 Microorganism denotes Rickettsia felis 42862
T28 572-582 Microorganism denotes rickettsia 780
T29 599-604 Habitat denotes fleas OBT:002034
T30 614-631 Microorganism denotes Rickettsia bellii 33990
T31 661-666 Habitat denotes ticks OBT:001821
T33 675-681 Habitat denotes animal OBT:000193
T32-0 675-681 _FRAGMENT denotes animal OBT:000521
T32-1 691-696 Habitat denotes blood
T34 685-696 Habitat denotes human blood OBT:000521
T35 685-690 Habitat denotes human OBT:002488
T36 718-729 Microorganism denotes rickettsial 780
T37 743-749 Habitat denotes animal OBT:000193
T38-0 743-749 _FRAGMENT denotes animal OBT:000007|OBT:000524
T38-1 760-764 Habitat denotes sera
T40 754-764 Habitat denotes human sera OBT:000524|OBT:000007
T39 754-759 Habitat denotes human OBT:002488
T41 815-825 Microorganism denotes rickettsia 780
T42 836-849 Microorganism denotes R. rickettsii 783
T43 851-861 Microorganism denotes R. parkeri 35792
T44 863-871 Microorganism denotes R. felis 42862
T45 877-886 Microorganism denotes R. bellii 33990
T47 894-901 Habitat denotes opossum OBT:002161
T46-0 894-901 _FRAGMENT denotes opossum OBT:000524|OBT:000007
T46-1 925-929 Habitat denotes sera
T49 903-906 Habitat denotes dog OBT:003092
T48-0 903-906 _FRAGMENT denotes dog OBT:000524|OBT:000007
T48-1 925-929 Habitat denotes sera
T50 908-913 Habitat denotes horse OBT:003320
T51-0 908-913 _FRAGMENT denotes horse OBT:000524|OBT:000007
T51-1 925-929 Habitat denotes sera
T52 919-929 Habitat denotes human sera OBT:000007|OBT:000524
T53 919-924 Habitat denotes human OBT:002488
T54 941-954 Microorganism denotes R. rickettsii 783
T55 1017-1028 Microorganism denotes rickettsial 780
T56 1045-1049 Habitat denotes sera OBT:000524|OBT:000007
T57 1109-1122 Microorganism denotes R. rickettsii 783
T59 1149-1156 Habitat denotes opossum OBT:002161
T58-0 1149-1156 _FRAGMENT denotes opossum OBT:000524|OBT:000007
T58-1 1173-1177 Habitat denotes sera
T60 1158-1161 Habitat denotes dog OBT:003092
T61-0 1158-1161 _FRAGMENT denotes dog OBT:000007|OBT:000524
T61-1 1173-1177 Habitat denotes sera
T63 1167-1177 Habitat denotes horse sera OBT:000524|OBT:000007
T62 1167-1172 Habitat denotes horse OBT:003320
T64 1218-1228 Microorganism denotes R. parkeri 35792
T65 1307-1320 Microorganism denotes R. rickettsii 783
T66 1325-1335 Microorganism denotes R. parkeri 35792
T67 1345-1352 Habitat denotes animals OBT:000193
T68 1360-1366 Habitat denotes humans OBT:002488
C-T32-0 T32-1 T32-0 _lexicallyChainedTo blood,animal
C-T38-0 T38-1 T38-0 _lexicallyChainedTo sera,animal
C-T46-0 T46-1 T46-0 _lexicallyChainedTo sera,opossum
C-T48-0 T48-1 T48-0 _lexicallyChainedTo sera,dog
C-T51-0 T51-1 T51-0 _lexicallyChainedTo sera,horse
C-T58-0 T58-1 T58-0 _lexicallyChainedTo sera,opossum
C-T61-0 T61-1 T61-0 _lexicallyChainedTo sera,dog