BB-norm+ner@ldeleger:BB-norm+ner-18094887 JSONTXT

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bionlp-ost-19-BB-norm-ner-dev

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Id Subject Object Predicate Lexical cue NCBI_Taxonomy OntoBiotope
T1 0-69 Title denotes Rickettsia infection in five areas of the state of São Paulo, Brazil.
T2 70-1458 Paragraph denotes This study investigated rickettsial infection in animals, humans, ticks, and fleas collected in five areas of the state of São Paulo. Eight flea species (Adoratopsylla antiquorum antiquorum, Ctenocephalides felis felis, Polygenis atopus, Polygenis rimatus, Polygenis roberti roberti, Polygenis tripus, Rhopalopsyllus lugubris, and Rhopalopsyllus lutzi lutzi), and five tick species (Amblyomma aureolatum, Amblyomma cajennense, Amblyomma dubitatum, Ixodes loricatus, and Rhipicephalus sanguineus) were collected from dogs, cats, and opossums. Rickettsia felis was the only rickettsia found infecting fleas, whereas Rickettsia bellii was the only agent infecting ticks, but no animal or human blood was shown to contain rickettsial DNA. Testing animal and human sera by indirect immunofluorescence assay against four rickettsia antigens (R. rickettsii, R. parkeri, R. felis, and R. bellii), some opossum, dog, horse, and human sera reacted to R. rickettsii with titers at least four-fold higher than to the other three rickettsial antigens. These sera were considered to have a predominant antibody response to R. rickettsii. Using the same criteria, opossum, dog, and horse sera showed predominant antibody response to R. parkeri or a very closely related genotype. Our serological results suggest that both R. rickettsii and R. parkeri infected animals and/or humans in the studied areas.
T3 0-10 Microorganism denotes Rickettsia 780
T4 94-105 Microorganism denotes rickettsial 780
T5 119-126 Habitat denotes animals OBT:000193
T6 128-134 Habitat denotes humans OBT:002488
T7 136-141 Habitat denotes ticks OBT:001821
T8 147-152 Habitat denotes fleas OBT:002034
T9 210-214 Habitat denotes flea OBT:002034
T10 224-259 Habitat denotes Adoratopsylla antiquorum antiquorum OBT:002034
T11 261-288 Habitat denotes Ctenocephalides felis felis OBT:002034
T12 290-306 Habitat denotes Polygenis atopus OBT:002034
T13 308-325 Habitat denotes Polygenis rimatus OBT:002034
T14 327-352 Habitat denotes Polygenis roberti roberti OBT:002034
T15 354-370 Habitat denotes Polygenis tripus OBT:002034
T16 372-395 Habitat denotes Rhopalopsyllus lugubris OBT:002034
T17 401-427 Habitat denotes Rhopalopsyllus lutzi lutzi OBT:002034
T18 439-443 Habitat denotes tick OBT:001821
T19 453-473 Habitat denotes Amblyomma aureolatum OBT:001821
T20 475-495 Habitat denotes Amblyomma cajennense OBT:001821
T21 497-516 Habitat denotes Amblyomma dubitatum OBT:001821
T22 518-534 Habitat denotes Ixodes loricatus OBT:001821
T23 540-564 Habitat denotes Rhipicephalus sanguineus OBT:002693
T24 586-590 Habitat denotes dogs OBT:003092
T25 592-596 Habitat denotes cats OBT:003086
T26 602-610 Habitat denotes opossums OBT:002161
T27 612-628 Microorganism denotes Rickettsia felis 42862
T28 642-652 Microorganism denotes rickettsia 780
T29 669-674 Habitat denotes fleas OBT:002034
T30 684-701 Microorganism denotes Rickettsia bellii 33990
T31 731-736 Habitat denotes ticks OBT:001821
T33 745-751 Habitat denotes animal OBT:000193
T32-0 745-751 _FRAGMENT denotes animal OBT:000521
T32-1 761-766 Habitat denotes blood
T34 755-766 Habitat denotes human blood OBT:000521
T35 755-760 Habitat denotes human OBT:002488
T36 788-799 Microorganism denotes rickettsial 780
T37 813-819 Habitat denotes animal OBT:000193
T38-0 813-819 _FRAGMENT denotes animal OBT:000007|OBT:000524
T38-1 830-834 Habitat denotes sera
T40 824-834 Habitat denotes human sera OBT:000524|OBT:000007
T39 824-829 Habitat denotes human OBT:002488
T41 885-895 Microorganism denotes rickettsia 780
T42 906-919 Microorganism denotes R. rickettsii 783
T43 921-931 Microorganism denotes R. parkeri 35792
T44 933-941 Microorganism denotes R. felis 42862
T45 947-956 Microorganism denotes R. bellii 33990
T47 964-971 Habitat denotes opossum OBT:002161
T46-0 964-971 _FRAGMENT denotes opossum OBT:000524|OBT:000007
T46-1 995-999 Habitat denotes sera
T49 973-976 Habitat denotes dog OBT:003092
T48-0 973-976 _FRAGMENT denotes dog OBT:000524|OBT:000007
T48-1 995-999 Habitat denotes sera
T50 978-983 Habitat denotes horse OBT:003320
T51-0 978-983 _FRAGMENT denotes horse OBT:000524|OBT:000007
T51-1 995-999 Habitat denotes sera
T52 989-999 Habitat denotes human sera OBT:000007|OBT:000524
T53 989-994 Habitat denotes human OBT:002488
T54 1011-1024 Microorganism denotes R. rickettsii 783
T55 1087-1098 Microorganism denotes rickettsial 780
T56 1115-1119 Habitat denotes sera OBT:000524|OBT:000007
T57 1179-1192 Microorganism denotes R. rickettsii 783
T59 1219-1226 Habitat denotes opossum OBT:002161
T58-0 1219-1226 _FRAGMENT denotes opossum OBT:000524|OBT:000007
T58-1 1243-1247 Habitat denotes sera
T60 1228-1231 Habitat denotes dog OBT:003092
T61-0 1228-1231 _FRAGMENT denotes dog OBT:000007|OBT:000524
T61-1 1243-1247 Habitat denotes sera
T63 1237-1247 Habitat denotes horse sera OBT:000524|OBT:000007
T62 1237-1242 Habitat denotes horse OBT:003320
T64 1288-1298 Microorganism denotes R. parkeri 35792
T65 1377-1390 Microorganism denotes R. rickettsii 783
T66 1395-1405 Microorganism denotes R. parkeri 35792
T67 1415-1422 Habitat denotes animals OBT:000193
T68 1430-1436 Habitat denotes humans OBT:002488
C-T32-0 T32-1 T32-0 _lexicallyChainedTo blood,animal
C-T38-0 T38-1 T38-0 _lexicallyChainedTo sera,animal
C-T46-0 T46-1 T46-0 _lexicallyChainedTo sera,opossum
C-T48-0 T48-1 T48-0 _lexicallyChainedTo sera,dog
C-T51-0 T51-1 T51-0 _lexicallyChainedTo sera,horse
C-T58-0 T58-1 T58-0 _lexicallyChainedTo sera,opossum
C-T61-0 T61-1 T61-0 _lexicallyChainedTo sera,dog