BB-norm+ner@ldeleger:BB-norm+ner-10738994 JSONTXT

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bionlp-ost-19-BB-norm-ner-train

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Id Subject Object Predicate Lexical cue NCBI_Taxonomy OntoBiotope
T1 0-188 Title denotes Genotyping by restriction endonuclease analysis compared to phenotyping by antibiogram for typing methicillin-resistant Staphylococcus aureus strains colonizing patients in a nursing home.
T2 189-545 Paragraph denotes To assist in defining patterns of methicillin-resistant Staphylococcus aureus (MRSA) colonization in a skilled nursing facility (SNF), we compared genotyping by field-inversion gel electrophoresis (FIGE) restriction endonuclease digestion analysis (REA) with phenotyping by antibiogram for defining strain relatedness among MRSA isolates from SNF patients.
T3 546-632 Paragraph denotes Prospective screening culture surveillance for MRSA among patients in a community SNF.
T4 633-877 Paragraph denotes Nares and stool swab cultures were obtained from newly admitted patients and from all patients quarterly. MRSA were isolated by oxacillin screening agar. Antibiograms were determined by the disk-diffusion method, and genotyping was by FIGE REA.
T5 878-1159 Paragraph denotes It was shown that, among isolates with the same genotypes, many had different antibiograms; among isolates with the same antibiograms, many had different genotypes; and the discriminatory indices for isolates of MRSA by FIGE REA and by antibiogram were 0.56 and 0.78, respectively.
T6 1160-1632 Paragraph denotes Our study demonstrated that, in patients from one SNF, genotyping by FIGE REA identified two prevalent REA DNA types, but with variability of antibiogram patterns within each DNA type; the antibiogram also identified prevalent patterns with variability of REA DNA type within each antibiogram pattern. The discriminatory index of antibiograms alone, or of genotypes alone as determined by FIGE REA, was poor for strains of MRSA isolated from the SNF patients in our study.
T7 98-119 Phenotype denotes methicillin-resistant OBT:002817
T8 120-141 Microorganism denotes Staphylococcus aureus 1280
T9 161-169 Habitat denotes patients OBT:003285
T10 175-187 Habitat denotes nursing home OBT:001231
T11 223-244 Phenotype denotes methicillin-resistant OBT:002817
T12 245-266 Microorganism denotes Staphylococcus aureus 1280
T13 268-272 Microorganism denotes MRSA 1280
T14 268-272 Phenotype denotes MRSA OBT:002817
T15 292-316 Habitat denotes skilled nursing facility OBT:001231|OBT:002518
T16 318-321 Habitat denotes SNF OBT:002518|OBT:001231
T17 513-517 Microorganism denotes MRSA 1280
T18 513-517 Phenotype denotes MRSA OBT:002817
T19 532-544 Habitat denotes SNF patients OBT:003220
T20 532-535 Habitat denotes SNF OBT:002518|OBT:001231
T21 593-597 Microorganism denotes MRSA 1280
T22 593-597 Phenotype denotes MRSA OBT:002817
T23 604-612 Habitat denotes patients OBT:003220
T24 618-631 Habitat denotes community SNF OBT:001231|OBT:002518
T26 633-638 Habitat denotes Nares OBT:000754
T25-1 633-638,649-662 Habitat denotes Nares swab cultures
T27 643-662 Habitat denotes stool swab cultures OBT:001737|OBT:000007
T28 643-648 Habitat denotes stool OBT:001102
T29 697-705 Habitat denotes patients OBT:003220
T30 719-727 Habitat denotes patients OBT:003220
T31 739-743 Microorganism denotes MRSA 1280
T32 739-743 Phenotype denotes MRSA OBT:002817
T33 761-785 Habitat denotes oxacillin screening agar OBT:000031
T34 1090-1094 Microorganism denotes MRSA 1280
T35 1090-1094 Phenotype denotes MRSA OBT:002817
T36 1192-1213 Habitat denotes patients from one SNF OBT:003220
T37 1210-1213 Habitat denotes SNF OBT:002518|OBT:001231
T38 1583-1587 Microorganism denotes MRSA 1280
T39 1583-1587 Phenotype denotes MRSA OBT:002817
T41 1606-1618 Habitat denotes SNF patients OBT:003220
T40 1606-1609 Habitat denotes SNF OBT:002518|OBT:001231