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BB-kb@ldeleger:BB-kb-6107735 JSONTXT

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bionlp-ost-19-BB-kb-train

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue NCBI_Taxonomy OntoBiotope
T1 0-55 Title denotes Recurrence of Pelecypod-associated cholera in Sardinia.
T3 14-23 Habitat denotes Pelecypod OBT:001651
T2 56-934 Paragraph denotes From Oct. 30 to Nov. 7, 1979, 10 people in the Sardinian province of Cagliari had onset of bacteriologically confirmed cholera. Two symptom-free excretors of Vibrio cholerae O:1 were detected in household contacts of the patients. There were no deaths. All but 1 of the 12 people with V. cholerae O:1 infection gave a history of recent consumption of marine bivalves known locally as arselle (pelecypods). Triplicate matched neighbourhood controls for each of the first 7 cases identified were also interviewed; none had recently eaten arselle. V. cholerae O:1 was also recovered from samples of water and bivalves obtained from a lagoon on the outskirts of the city of Cagliari. Arselle had also been implicated as the vehicle of transmission in 1973 in the last outbreak of cholera in Sardinia. It seems unlikely that cholera transmission had persisted locally in the interim.
T4 89-95 Habitat denotes people OBT:003269
T5 214-233 Microorganism denotes Vibrio cholerae O:1 127906
T7 251-285 Habitat denotes household contacts of the patients OBT:002488
T6 251-260 Habitat denotes household OBT:000315
T8 277-285 Habitat denotes patients OBT:003269
T9 329-366 Habitat denotes people with V. cholerae O:1 infection OBT:003269
T10 341-356 Microorganism denotes V. cholerae O:1 127906
T11 407-422 Habitat denotes marine bivalves OBT:001651
T12 407-413 Habitat denotes marine OBT:000338
T13 440-447 Habitat denotes arselle OBT:001651
T14 449-459 Habitat denotes pelecypods OBT:001651
T15 592-599 Habitat denotes arselle OBT:001651
T16 601-616 Microorganism denotes V. cholerae O:1 127906
T17 652-657 Habitat denotes water OBT:000468
T18 662-670 Habitat denotes bivalves OBT:001215|OBT:001651
T19 687-734 Habitat denotes lagoon on the outskirts of the city of Cagliari OBT:003213
T20 701-734 Habitat denotes outskirts of the city of Cagliari OBT:000232
T21 736-743 Habitat denotes Arselle OBT:001651
E1 214-233 Lives_In denotes Vibrio cholerae O:1
E2 341-356 Lives_In denotes V. cholerae O:1
E3 601-616 Lives_In denotes V. cholerae O:1
E4 601-616 Lives_In denotes V. cholerae O:1
E5 601-616 Lives_In denotes V. cholerae O:1
E6 601-616 Lives_In denotes V. cholerae O:1
R1 E1 T5 Microorganism Vibrio cholerae O:1,Vibrio cholerae O:1
R2 E1 T7 Location Vibrio cholerae O:1,household contacts of the patients
R3 E2 T10 Microorganism V. cholerae O:1,V. cholerae O:1
R4 E2 T9 Location V. cholerae O:1,people with V. cholerae O:1 infection
R5 E3 T16 Microorganism V. cholerae O:1,V. cholerae O:1
R6 E3 T17 Location V. cholerae O:1,water
R7 E4 T16 Microorganism V. cholerae O:1,V. cholerae O:1
R8 E4 T19 Location V. cholerae O:1,lagoon on the outskirts of the city of Cagliari
R9 E5 T16 Microorganism V. cholerae O:1,V. cholerae O:1
R10 E5 T21 Location V. cholerae O:1,Arselle
R11 E6 T16 Microorganism V. cholerae O:1,V. cholerae O:1
R12 E6 T18 Location V. cholerae O:1,bivalves