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bionlp-ost-19-BB-kb-dev

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Id Subject Object Predicate Lexical cue NCBI_Taxonomy OntoBiotope
T1 0-129 Title denotes Recurrence of Helicobacter pylori infection 1 year after successful treatment: prospective cohort study in the Republic of Yemen.
T6 14-33 Microorganism denotes Helicobacter pylori 210
T2 130-311 Paragraph denotes To investigate the prevalence of Helicobacter pylori infection in dyspeptic patients in the Republic of Yemen and the recurrence rate 1 year after apparently successful eradication.
T7 163-182 Microorganism denotes Helicobacter pylori 210
T8 196-214 Habitat denotes dyspeptic patients OBT:003220
T3 312-798 Paragraph denotes A total of 275 patients with chronic dyspepsia seen in one clinic were enrolled. Gastric biopsies were obtained at endoscopy and H. pylori infection was diagnosed using the rapid urease test. Patients with H. pylori infection were given either clarithromycin or metronidazole-based triple therapy. Six weeks later H. pylori status was assessed using the C-urea breath test (C-UBT). Those who were negative for H. pylori had a further C-UBT after 1 year to establish the recurrence rate.
T9 327-358 Habitat denotes patients with chronic dyspepsia OBT:003220
T10 371-377 Habitat denotes clinic OBT:002694
T11 393-409 Habitat denotes Gastric biopsies OBT:000110
T12 393-400 Habitat denotes Gastric OBT:001792
T13 441-450 Microorganism denotes H. pylori 210
T14 504-537 Habitat denotes Patients with H. pylori infection OBT:003269
T15 518-527 Microorganism denotes H. pylori 210
T16 626-635 Microorganism denotes H. pylori 210
T17 722-731 Microorganism denotes H. pylori 210
T4 799-1360 Paragraph denotes The prevalence of H. pylori infection at entry to the study was 82.2% [95% confidence interval (CI) 78-87%]. The overall eradication rate 6 weeks after treatment was 49.1% (95% CI 42.6-55.6%) by intention-to-treat analysis, and 60% (95% CI 53-67%) by per-protocol analysis. Recurrence rate of H. pylori infection at 1 year was 34% (95% CI 14-45%) and the only predictor of recurrence was an excess delta C-UBT value less than 3.5 per million but equal to or greater than 2.5 per million at 6 weeks after treatment (odds ratio 2.28; 95% CI 1.17-4.44; P = 0.028).
T18 817-826 Microorganism denotes H. pylori 210
T19 1092-1101 Microorganism denotes H. pylori 210
T5 1361-1744 Paragraph denotes The prevalence of H. pylori infection in dyspeptic patients in Yemen is very high, the eradication rate with standard triple therapy was unsatisfactory probably because of widespread bacterial resistance due to unrestricted antibiotic use. The recurrence rate of infection at 1 year was high, as a result of recrudescence of incompletely eradicated organisms rather than reinfection.
T20 1379-1388 Microorganism denotes H. pylori 210
T21 1402-1420 Habitat denotes dyspeptic patients OBT:003220
T22 1533-1599 Phenotype denotes widespread bacterial resistance due to unrestricted antibiotic use OBT:002674
E2 163-182 Lives_In denotes Helicobacter pylori
E4 441-450 Lives_In denotes H. pylori
E5 518-527 Lives_In denotes H. pylori
E7 1379-1388 Lives_In denotes H. pylori
E8 1379-1388 Exhibits denotes H. pylori
R1 E2 T7 Microorganism Helicobacter pylori,Helicobacter pylori
R2 E2 T8 Location Helicobacter pylori,dyspeptic patients
R3 E4 T13 Microorganism H. pylori,H. pylori
R4 E4 T12 Location H. pylori,Gastric
R5 E5 T15 Microorganism H. pylori,H. pylori
R6 E5 T14 Location H. pylori,Patients with H. pylori infection
R7 E7 T20 Microorganism H. pylori,H. pylori
R8 E7 T21 Location H. pylori,dyspeptic patients
R9 E8 T20 Microorganism H. pylori,H. pylori
R10 E8 T22 Property H. pylori,widespread bacterial resistance due to unrestricted antibiotic use