BB-kb+ner@ldeleger:BB-kb+ner-19622846 / 95-964
Annnotations
bionlp-ost-19-BB-kb-ner-train
Below, discontinuous spans are shown in the chain model. You can change it to the bag model.
| Id | Subject | Object | Predicate | Lexical cue | NCBI_Taxonomy | OntoBiotope |
|---|---|---|---|---|---|---|
| T2 | 0-869 | Paragraph | denotes | We examined jail environmental surfaces to explore whether they might serve as reservoirs of viable methicillin-resistant Staphylococcus aureus (MRSA). We swabbed 132 surfaces, inoculated primary and secondary mannitol salts and oxacillin-resistant screening agar, and used API tests to identify S. aureus and E-tests to determine methicillin/oxacillin resistance. We recovered S. aureus from 10 (7.6%) surfaces; eight (6.1%) isolates were MRSA. We ran pulsed-field gel electrophoresis on six resistant isolates and observed three patterns, one of which was identical to that identified in a previous study of inmates' nasal specimens. Finding MRSA-contaminated surfaces on a variety of environmental surfaces in the absence of an overt outbreak emphasizes that correctional facilities should have protocols for environmental cleaning as a component of MRSA prevention. | ||
| T9 | 12-39 | Habitat | denotes | jail environmental surfaces | OBT:000006 | |
| T8 | 12-16 | Habitat | denotes | jail | OBT:000695 | |
| T10 | 100-121 | Phenotype | denotes | methicillin-resistant | OBT:002817 | |
| T11 | 122-143 | Microorganism | denotes | Staphylococcus aureus | 1280 | |
| T12 | 145-149 | Microorganism | denotes | MRSA | 1280 | |
| T13 | 145-149 | Phenotype | denotes | MRSA | OBT:002817 | |
| T14 | 188-224 | Habitat | denotes | primary and secondary mannitol salts | OBT:000007 | |
| T15 | 229-263 | Habitat | denotes | oxacillin-resistant screening agar | OBT:000041|OBT:000031 | |
| T16 | 229-248 | Phenotype | denotes | oxacillin-resistant | OBT:002920 | |
| T17 | 296-305 | Microorganism | denotes | S. aureus | 1280 | |
| T18-0 | 331-342 | _FRAGMENT | denotes | methicillin | OBT:002817 | |
| T18-1 | 353-363 | Phenotype | denotes | resistance | ||
| T19 | 343-363 | Phenotype | denotes | oxacillin resistance | OBT:002920 | |
| T20 | 378-387 | Microorganism | denotes | S. aureus | 1280 | |
| T21 | 440-444 | Microorganism | denotes | MRSA | 1280 | |
| T22 | 440-444 | Phenotype | denotes | MRSA | OBT:002817 | |
| T23 | 493-502 | Phenotype | denotes | resistant | OBT:002817|OBT:002920 | |
| T24 | 610-624 | Habitat | denotes | inmates' nasal | OBT:000767 | |
| T25 | 610-617 | Habitat | denotes | inmates | OBT:003291 | |
| T26 | 644-648 | Microorganism | denotes | MRSA | 1280 | |
| T27 | 644-648 | Phenotype | denotes | MRSA | OBT:002817 | |
| T28 | 762-785 | Habitat | denotes | correctional facilities | OBT:000695 | |
| T29 | 853-857 | Microorganism | denotes | MRSA | 1280 | |
| T30 | 853-857 | Phenotype | denotes | MRSA | OBT:002817 | |
| E6 | 122-143 | Exhibits | denotes | Staphylococcus aureus | ||
| E7 | 145-149 | Exhibits | denotes | MRSA | ||
| E9 | 378-387 | Lives_In | denotes | S. aureus | ||
| E10 | 378-387 | Lives_In | denotes | S. aureus | ||
| E11 | 378-387 | Lives_In | denotes | S. aureus | ||
| E12 | 378-387 | Lives_In | denotes | S. aureus | ||
| E8 | 378-387 | Exhibits | denotes | S. aureus | ||
| E14 | 440-444 | Lives_In | denotes | MRSA | ||
| E15 | 440-444 | Lives_In | denotes | MRSA | ||
| E16 | 440-444 | Lives_In | denotes | MRSA | ||
| E17 | 440-444 | Lives_In | denotes | MRSA | ||
| E18 | 440-444 | Lives_In | denotes | MRSA | ||
| E19 | 440-444 | Lives_In | denotes | MRSA | ||
| E13 | 440-444 | Exhibits | denotes | MRSA | ||
| E21 | 644-648 | Lives_In | denotes | MRSA | ||
| E20 | 644-648 | Exhibits | denotes | MRSA | ||
| E23 | 853-857 | Lives_In | denotes | MRSA | ||
| E22 | 853-857 | Exhibits | denotes | MRSA | ||
| R11 | E6 | T11 | Microorganism | Staphylococcus aureus,Staphylococcus aureus | ||
| R12 | E6 | T10 | Property | Staphylococcus aureus,methicillin-resistant | ||
| R13 | E7 | T12 | Microorganism | MRSA,MRSA | ||
| R14 | E7 | T13 | Property | MRSA,MRSA | ||
| R15 | E9 | T20 | Microorganism | S. aureus,S. aureus | ||
| R16 | E9 | T15 | Location | S. aureus,oxacillin-resistant screening agar | ||
| R17 | E10 | T20 | Microorganism | S. aureus,S. aureus | ||
| R18 | E10 | T8 | Location | S. aureus,jail | ||
| R19 | E11 | T20 | Microorganism | S. aureus,S. aureus | ||
| R20 | E11 | T9 | Location | S. aureus,jail environmental surfaces | ||
| R21 | E12 | T20 | Microorganism | S. aureus,S. aureus | ||
| R22 | E12 | T14 | Location | S. aureus,primary and secondary mannitol salts | ||
| R23 | E8 | T20 | Microorganism | S. aureus,S. aureus | ||
| R24 | E8 | T22 | Property | S. aureus,MRSA | ||
| R25 | E14 | T21 | Microorganism | MRSA,MRSA | ||
| R26 | E14 | T24 | Location | MRSA,inmates' nasal | ||
| R27 | E15 | T21 | Microorganism | MRSA,MRSA | ||
| R28 | E15 | T9 | Location | MRSA,jail environmental surfaces | ||
| R29 | E16 | T21 | Microorganism | MRSA,MRSA | ||
| R30 | E16 | T14 | Location | MRSA,primary and secondary mannitol salts | ||
| R31 | E17 | T21 | Microorganism | MRSA,MRSA | ||
| R32 | E17 | T15 | Location | MRSA,oxacillin-resistant screening agar | ||
| R33 | E18 | T21 | Microorganism | MRSA,MRSA | ||
| R34 | E18 | T25 | Location | MRSA,inmates | ||
| R35 | E19 | T21 | Microorganism | MRSA,MRSA | ||
| R36 | E19 | T8 | Location | MRSA,jail | ||
| R37 | E13 | T21 | Microorganism | MRSA,MRSA | ||
| R38 | E13 | T22 | Property | MRSA,MRSA | ||
| R39 | E21 | T26 | Microorganism | MRSA,MRSA | ||
| R40 | E21 | T28 | Location | MRSA,correctional facilities | ||
| R41 | E20 | T26 | Microorganism | MRSA,MRSA | ||
| R42 | E20 | T27 | Property | MRSA,MRSA | ||
| R43 | E23 | T29 | Microorganism | MRSA,MRSA | ||
| R44 | E23 | T28 | Location | MRSA,correctional facilities | ||
| R45 | E22 | T29 | Microorganism | MRSA,MRSA | ||
| R46 | E22 | T30 | Property | MRSA,MRSA | ||
| C-T18-0 | T18-1 | T18-0 | _lexicallyChainedTo | resistance,methicillin |