BB-kb+ner@ldeleger:BB-kb+ner-19175621 JSONTXT

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bionlp-ost-19-BB-kb-ner-train

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Id Subject Object Predicate Lexical cue NCBI_Taxonomy OntoBiotope
T1 0-159 Title denotes Occurrence of extended-spectrum beta-lactamase-producing Salmonella enterica in northern Spain with evidence of CTX-M-9 clonal spread among animals and humans.
T2 160-1017 Paragraph denotes Among the 1233 Salmonella enterica isolates obtained in two Spanish hospitals, five isolates (0.4%) (serovars: Virchow, four; Livingstone, one) had the phenotype of an extended-spectrum beta-lactamase (ESBL) producer. The genetic characterization of the ESBL of S. enterica Livingstone revealed a bla(SHV-2) gene. The bla(CTX-M-10) gene in a phage-related genetic environment was found in one S. enterica Virchow isolate, and the bla(CTX-M-9) gene within the In60 integron was found in the three remaining Virchow isolates. These three isolates presented indistinguishable or closely related pulsed-field gel electrophoresis patterns among themselves and also as compared with the two other bla(CTX-M-9)-containing isolates previously obtained from animals. ESBL production is an emerging mechanism of resistance in S. enterica in the two studied hospitals.
T3 32-56 Phenotype denotes beta-lactamase-producing OBT:000019
T4 57-76 Microorganism denotes Salmonella enterica 28901
T5 140-147 Habitat denotes animals OBT:000193
T6 152-158 Habitat denotes humans OBT:002488
T7 175-194 Microorganism denotes Salmonella enterica 28901
T8 220-237 Habitat denotes Spanish hospitals OBT:002714
T9 271-278 Microorganism denotes Virchow 48409
T10 286-297 Microorganism denotes Livingstone 260680
T11 328-376 Phenotype denotes extended-spectrum beta-lactamase (ESBL) producer OBT:000019
T12 422-445 Microorganism denotes S. enterica Livingstone 260680
T13 553-572 Microorganism denotes S. enterica Virchow 48409
T14 666-673 Microorganism denotes Virchow 48409
T15 909-916 Habitat denotes animals OBT:000193
T16 918-933 Phenotype denotes ESBL production OBT:000019
T17 962-972 Phenotype denotes resistance OBT:000598
T18 976-987 Microorganism denotes S. enterica 28901
T19 1007-1016 Habitat denotes hospitals OBT:002714
E3 57-76 Lives_In denotes Salmonella enterica
E4 57-76 Lives_In denotes Salmonella enterica
E1 57-76 Exhibits denotes Salmonella enterica
E5 175-194 Lives_In denotes Salmonella enterica
E7 271-278 Lives_In denotes Virchow
E6 271-278 Exhibits denotes Virchow
E9 286-297 Lives_In denotes Livingstone
E8 286-297 Exhibits denotes Livingstone
E10 976-987 Lives_In denotes S. enterica
R1 E3 T4 Microorganism Salmonella enterica,Salmonella enterica
R2 E3 T5 Location Salmonella enterica,animals
R3 E4 T4 Microorganism Salmonella enterica,Salmonella enterica
R4 E4 T6 Location Salmonella enterica,humans
R5 E1 T4 Microorganism Salmonella enterica,Salmonella enterica
R6 E1 T3 Property Salmonella enterica,beta-lactamase-producing
R7 E5 T7 Microorganism Salmonella enterica,Salmonella enterica
R8 E5 T8 Location Salmonella enterica,Spanish hospitals
R9 E7 T9 Microorganism Virchow,Virchow
R10 E7 T8 Location Virchow,Spanish hospitals
R11 E6 T9 Microorganism Virchow,Virchow
R12 E6 T11 Property Virchow,extended-spectrum beta-lactamase (ESBL) producer
R13 E9 T10 Microorganism Livingstone,Livingstone
R14 E9 T8 Location Livingstone,Spanish hospitals
R15 E8 T10 Microorganism Livingstone,Livingstone
R16 E8 T11 Property Livingstone,extended-spectrum beta-lactamase (ESBL) producer
R17 E10 T18 Microorganism S. enterica,S. enterica
R18 E10 T19 Location S. enterica,hospitals