BB-kb+ner@ldeleger:BB-kb+ner-19099664 / 101-1277 JSONTXT

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bionlp-ost-19-BB-kb-ner-train

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue NCBI_Taxonomy OntoBiotope
T2 0-1176 Paragraph denotes The purpose of this study was to determine the changes of pathogens in hematological ward and susceptibility of patients received chemotherapy to antibiotics. The pathogens were taken from blood, urine and sputum of patients who accepted chemotherapy from years 2001 to 2005, then were isolated and identified. The susceptibility test was performed by disk diffusion method. The results showed that the total of 418 strains were detected. Gram-negative bacteria were the most common of nosocomial infection. Pseudomonas aeruginosa, Enterobacter cloacae, E. coli account for the most of Gram negative- bacteria infection and most resistant to broad-spectrum penicillin, Acinetobacter baumannii showed a trend of increase. The ratios of gram positive bacteria and fungi were increased slowly, mainly as Enterococcus and Candida. Enterococcus is the most common cause of Gram-positive bacterial infection. Vancomycin resistance did not occur. It is concluded that Gram-negative bacteria are main cause of nosocomial infection in patients with hematological malignancies. Gram positive bacteria and fungi had been more frequent. Strains resistant to antimicrobial agents increase.
T6 58-67 Phenotype denotes pathogens OBT:000375
T7 71-89 Habitat denotes hematological ward OBT:000097
T8 112-142 Habitat denotes patients received chemotherapy OBT:003220
T9 163-172 Phenotype denotes pathogens OBT:000375
T10-0 189-194 _FRAGMENT denotes blood OBT:000521
T10-1 213-250 Habitat denotes of patients who accepted chemotherapy
T11-0 196-201 _FRAGMENT denotes urine OBT:001367
T11-1 213-250 Habitat denotes of patients who accepted chemotherapy
T12 206-250 Habitat denotes sputum of patients who accepted chemotherapy OBT:001335
T13 216-250 Habitat denotes patients who accepted chemotherapy OBT:003220
T14 439-452 Phenotype denotes Gram-negative OBT:000648
T15 486-496 Habitat denotes nosocomial OBT:000011
T16 508-530 Microorganism denotes Pseudomonas aeruginosa 287
T17 532-552 Microorganism denotes Enterobacter cloacae 550
T18 554-561 Microorganism denotes E. coli 562
T19 586-599 Phenotype denotes Gram negative OBT:000648
T20 629-667 Phenotype denotes resistant to broad-spectrum penicillin OBT:002829
T21 669-692 Microorganism denotes Acinetobacter baumannii 470
T22 735-748 Phenotype denotes gram positive OBT:000649
T23 801-813 Microorganism denotes Enterococcus 1350
T24 818-825 Microorganism denotes Candida 1535326
T25 827-839 Microorganism denotes Enterococcus 1350
T26 868-881 Phenotype denotes Gram-positive OBT:000649
T27 903-924 Phenotype denotes Vancomycin resistance OBT:002874
T28 961-974 Phenotype denotes Gram-negative OBT:000648
T29 1002-1012 Habitat denotes nosocomial OBT:000011
T30 1026-1066 Habitat denotes patients with hematological malignancies OBT:003220
T31 1068-1081 Phenotype denotes Gram positive OBT:000649
T32 1133-1166 Phenotype denotes resistant to antimicrobial agents OBT:002337
E1 508-530 Lives_In denotes Pseudomonas aeruginosa
E2 508-530 Lives_In denotes Pseudomonas aeruginosa
E3 508-530 Lives_In denotes Pseudomonas aeruginosa
E4 508-530 Lives_In denotes Pseudomonas aeruginosa
E5 508-530 Lives_In denotes Pseudomonas aeruginosa
E6 508-530 Exhibits denotes Pseudomonas aeruginosa
E7 508-530 Exhibits denotes Pseudomonas aeruginosa
E8 532-552 Lives_In denotes Enterobacter cloacae
E9 532-552 Lives_In denotes Enterobacter cloacae
E10 532-552 Lives_In denotes Enterobacter cloacae
E11 532-552 Lives_In denotes Enterobacter cloacae
E12 532-552 Lives_In denotes Enterobacter cloacae
E13 532-552 Exhibits denotes Enterobacter cloacae
E14 532-552 Exhibits denotes Enterobacter cloacae
E15 554-561 Exhibits denotes E. coli
E16 554-561 Exhibits denotes E. coli
E17 669-692 Lives_In denotes Acinetobacter baumannii
E18 669-692 Lives_In denotes Acinetobacter baumannii
E19 669-692 Lives_In denotes Acinetobacter baumannii
E20 669-692 Lives_In denotes Acinetobacter baumannii
E21 669-692 Lives_In denotes Acinetobacter baumannii
E22 801-813 Lives_In denotes Enterococcus
E23 801-813 Lives_In denotes Enterococcus
E24 801-813 Lives_In denotes Enterococcus
E25 801-813 Lives_In denotes Enterococcus
E26 801-813 Lives_In denotes Enterococcus
E27 801-813 Exhibits denotes Enterococcus
E28 827-839 Exhibits denotes Enterococcus
R44 E22 T11-0 Location Enterococcus,urine
R1 E1 T16 Microorganism Pseudomonas aeruginosa,Pseudomonas aeruginosa
R2 E1 T11-0 Location Pseudomonas aeruginosa,urine
R3 E2 T16 Microorganism Pseudomonas aeruginosa,Pseudomonas aeruginosa
R4 E2 T13 Location Pseudomonas aeruginosa,patients who accepted chemotherapy
R5 E3 T16 Microorganism Pseudomonas aeruginosa,Pseudomonas aeruginosa
R6 E3 T12 Location Pseudomonas aeruginosa,sputum of patients who accepted chemotherapy
R7 E4 T16 Microorganism Pseudomonas aeruginosa,Pseudomonas aeruginosa
R8 E4 T15 Location Pseudomonas aeruginosa,nosocomial
R9 E5 T16 Microorganism Pseudomonas aeruginosa,Pseudomonas aeruginosa
R10 E5 T10-0 Location Pseudomonas aeruginosa,blood
R11 E6 T16 Microorganism Pseudomonas aeruginosa,Pseudomonas aeruginosa
R12 E6 T20 Property Pseudomonas aeruginosa,resistant to broad-spectrum penicillin
R13 E7 T16 Microorganism Pseudomonas aeruginosa,Pseudomonas aeruginosa
R14 E7 T19 Property Pseudomonas aeruginosa,Gram negative
R15 E8 T17 Microorganism Enterobacter cloacae,Enterobacter cloacae
R16 E8 T11-0 Location Enterobacter cloacae,urine
R17 E9 T17 Microorganism Enterobacter cloacae,Enterobacter cloacae
R18 E9 T15 Location Enterobacter cloacae,nosocomial
R19 E10 T17 Microorganism Enterobacter cloacae,Enterobacter cloacae
R20 E10 T10-0 Location Enterobacter cloacae,blood
R21 E11 T17 Microorganism Enterobacter cloacae,Enterobacter cloacae
R22 E11 T12 Location Enterobacter cloacae,sputum of patients who accepted chemotherapy
R23 E12 T17 Microorganism Enterobacter cloacae,Enterobacter cloacae
R24 E12 T13 Location Enterobacter cloacae,patients who accepted chemotherapy
R25 E13 T17 Microorganism Enterobacter cloacae,Enterobacter cloacae
R26 E13 T20 Property Enterobacter cloacae,resistant to broad-spectrum penicillin
R27 E14 T17 Microorganism Enterobacter cloacae,Enterobacter cloacae
R28 E14 T19 Property Enterobacter cloacae,Gram negative
R29 E15 T18 Microorganism E. coli,E. coli
R30 E15 T19 Property E. coli,Gram negative
R31 E16 T18 Microorganism E. coli,E. coli
R32 E16 T20 Property E. coli,resistant to broad-spectrum penicillin
R33 E17 T21 Microorganism Acinetobacter baumannii,Acinetobacter baumannii
R34 E17 T10-0 Location Acinetobacter baumannii,blood
R35 E18 T21 Microorganism Acinetobacter baumannii,Acinetobacter baumannii
R36 E18 T12 Location Acinetobacter baumannii,sputum of patients who accepted chemotherapy
R37 E19 T21 Microorganism Acinetobacter baumannii,Acinetobacter baumannii
R38 E19 T13 Location Acinetobacter baumannii,patients who accepted chemotherapy
R39 E20 T21 Microorganism Acinetobacter baumannii,Acinetobacter baumannii
R40 E20 T15 Location Acinetobacter baumannii,nosocomial
R41 E21 T21 Microorganism Acinetobacter baumannii,Acinetobacter baumannii
R42 E21 T11-0 Location Acinetobacter baumannii,urine
R43 E22 T23 Microorganism Enterococcus,Enterococcus
R45 E23 T23 Microorganism Enterococcus,Enterococcus
R46 E23 T10-0 Location Enterococcus,blood
R47 E24 T23 Microorganism Enterococcus,Enterococcus
R48 E24 T13 Location Enterococcus,patients who accepted chemotherapy
R49 E25 T23 Microorganism Enterococcus,Enterococcus
R50 E25 T12 Location Enterococcus,sputum of patients who accepted chemotherapy
R51 E26 T23 Microorganism Enterococcus,Enterococcus
R52 E26 T15 Location Enterococcus,nosocomial
R53 E27 T23 Microorganism Enterococcus,Enterococcus
R54 E27 T22 Property Enterococcus,gram positive
R55 E28 T25 Microorganism Enterococcus,Enterococcus
R56 E28 T26 Property Enterococcus,Gram-positive
C-T10-0 T10-1 T10-0 _lexicallyChainedTo of patients who accepted chemotherapy,blood
C-T11-0 T11-1 T11-0 _lexicallyChainedTo of patients who accepted chemotherapy,urine