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Annotators

Below is a list of pre-registered, automatic annotation services which are interoperable with PubAnnotation.

If you do not know an applicable annotation service to your purpose, you may want to take a look at PubDictionaries, which is a highly customizable, dictionary-based text annotation service.

NameDescriptionMaintainer Updated_at

41-60 / 89 show all
PD-GlycoEpitope Jin-Dong Kim2024-09-17
PubTator-Chemical To pull the pre-computed chemical annotation from PubTator.Jin-Dong Kim2018-12-10
PubTator-Gene To pull the pre-computed gene annotation from PubTator.Jin-Dong Kim2018-12-10
PubTator-Species To pull the pre-computed Species annotation from PubTator.Jin-Dong Kim2018-12-10
PubTator-Disease To pull the pre-computed disease annotation from PubTator.Jin-Dong Kim2018-12-10
PubTator-Mutation To pull the pre-computed mutation annotation from PubTator.Jin-Dong Kim2018-12-10
discourse-simplifier A discourse analyzer developed by Univ. Manchester.Jin-Dong Kim2019-08-16
PD-NGLY1-deficiency-B A batch annotator for NGLY1 deficiencyJin-Dong Kim2020-04-04
PD-UBERON-AE It annotates for anatomical entities, based on the UBERON-AE dictionary on PubDictionaries. Threshold is set to 0.85.Jin-Dong Kim2021-10-03
PD-UBERON-AE-B It annotates for anatomical entities, based on the UBERON-AE dictionary on PubDictionaries. It used the default threshold, 0.85. It uses the batch mode annotation, and may be used for annotation to a large amount of documents.Jin-Dong Kim2021-12-03
PD-GlycanStructures-B Jin-Dong Kim2020-04-04
PD-GlycoGenes-B Jin-Dong Kim2020-04-04
PD-GlycoProteins-B Jin-Dong Kim2020-04-04
PD-FMA-PAE-B Batch mode annotator of PD-FMA-PAEJin-Dong Kim2022-04-18
PD-Preeclampsia-B Jin-Dong Kim2020-04-04
PD-MONDO-B PubDictionaries annotation with the MONDO dictionary. Asynchronous protocol.Jin-Dong Kim2020-12-23
EnjuParser Enju HPSG Parser developed by University of Tokyo.Jin-Dong Kim2020-12-31
PD-CHEBI Pubdictionaries annotation using the terms sourced from CHEBI, the 2020-03-31 versionJin-Dong Kim2021-12-14
PD-NCBITaxon-B Jin-Dong Kim2021-12-06
PubTator PubTator annotation provided by NCBIJin-Dong Kim2020-04-15