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Annotators

Below is a list of pre-registered, automatic annotation services which are interoperable with PubAnnotation.

If you do not know an applicable annotation service to your purpose, you may want to take a look at PubDictionaries, which is a highly customizable, dictionary-based text annotation service.

NameDescriptionMaintainer Updated_at

21-40 / 81 show all
PD-ORYZAGP-MSU-SYMB larmande2021-07-08
PD-ORYZAGP-MSU-SYMB-B larmande2021-07-08
PD-ORYZAGP-UNIPROT-SYMB-B larmande2021-07-13
PD-ORYZAGP-MSU-B Annotator created with OryzaGP and MSU URI in Batch modelarmande2021-01-22
PD-ORYZAGP-RAPDB-SYMB-B larmande2021-07-08
PD-ORYZAGP-SYMB larmande2021-07-08
PD-ORYZAGP-RAPDB OryzaGP pub dictionary based on RAPDB URIlarmande2021-07-09
PD-ORYZAGP-B larmande2021-01-26
PD-ORYZAGP-RAPDB-B annotator based on OryzaGP_RAPDB pub dictionary with batchlarmande2021-01-22
PD-ORYZAGP-UNIPROT-B use dictionary of rice gene mentions with UniProt Urislarmande2021-01-29
PD-ORYZAGP-MSU Annotator created with OryzaGP dataset and MSU URIlarmande2021-01-22
LappsGridTimeML TimeML event annotator from GATE running on the Language Applications Grid.ksuderman2018-04-14
LappsGridStanfordPOSTagger Stanford Part-Of-Speech tagger running on the Language Applications Grid.ksuderman2018-04-14
LappsGridGeneTagger GATE Gene tagger running on the Language Applications Gridksuderman2018-04-14
LappsGridBioNER The Abner Tagger for BioMedical named entity recognition running on the Language Applications Grid.ksuderman2018-04-14
GlycanIUPAC http://pubdictionaries.org/dictionaries/GlyTouCan-IUPAC_condensedkiyoko2021-01-19
GlyCosmosGlycans kiyoko2021-01-19
PD-NCBITaxon-B Jin-Dong Kim2021-12-06
PD-CHEBI Pubdictionaries annotation using the terms sourced from CHEBI, the 2020-03-31 versionJin-Dong Kim2021-12-14
PD-NGLY1-deficiency-B A batch annotator for NGLY1 deficiencyJin-Dong Kim2020-04-04