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Annotators

Below is a list of pre-registered, automatic annotation services which are interoperable with PubAnnotation.

If you do not know an applicable annotation service to your purpose, you may want to take a look at PubDictionaries, which is a highly customizable, dictionary-based text annotation service.

NameDescriptionMaintainer Updated_at

21-40 / 81 show all
PD-ORYZAGP-UNIPROT use dictionary with rice gene mention and UniProt URIslarmande2021-07-07
PD-ORYZAGP-UNIPROT-SYMB larmande2021-07-13
PD-ORYZAGP-RAPDB OryzaGP pub dictionary based on RAPDB URIlarmande2021-07-09
PD-ORYZAGP-SYMB larmande2021-07-08
PD-ORYZAGP-MSU-SYMB larmande2021-07-08
PD-ORYZAGP-RAPDB-SYMB larmande2021-07-08
PD-ORYZAGP-B larmande2021-01-26
PD-ORYZAGP-RAPDB-B annotator based on OryzaGP_RAPDB pub dictionary with batchlarmande2021-01-22
PD-ORYZAGP-MSU-B Annotator created with OryzaGP and MSU URI in Batch modelarmande2021-01-22
PD-ORYZAGP Annotator based on PubDictionary OryzaGP Oryzabase URIlarmande2021-01-26
PD-ORYZAGP-SYMB-B larmande2021-07-08
LappsGridTimeML TimeML event annotator from GATE running on the Language Applications Grid.ksuderman2018-04-14
LappsGridStanfordPOSTagger Stanford Part-Of-Speech tagger running on the Language Applications Grid.ksuderman2018-04-14
LappsGridGeneTagger GATE Gene tagger running on the Language Applications Gridksuderman2018-04-14
LappsGridBioNER The Abner Tagger for BioMedical named entity recognition running on the Language Applications Grid.ksuderman2018-04-14
GlycanIUPAC http://pubdictionaries.org/dictionaries/GlyTouCan-IUPAC_condensedkiyoko2021-01-19
GlyCosmosGlycans kiyoko2021-01-19
PubTator PubTator annotation provided by NCBIJin-Dong Kim2020-04-15
PD-NCBITaxon-B Jin-Dong Kim2021-12-06
PD-UBERON-AE It annotates for anatomical entities, based on the UBERON-AE dictionary on PubDictionaries. Threshold is set to 0.85.Jin-Dong Kim2021-10-03