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Annotators

Below is a list of pre-registered, automatic annotation services which are interoperable with PubAnnotation.

If you do not know an applicable annotation service to your purpose, you may want to take a look at PubDictionaries, which is a highly customizable, dictionary-based text annotation service.

Name DescriptionMaintainerUpdated_at

1-20 / 77 show all
AnnotaionByMondo_095 Yasunori Yamamoto2021-12-23
AnnotationByCellosaurus Yasunori Yamamoto2021-12-23
Cell_line Eisuke Dohi2021-12-23
Cellosaurus_v33 Annotator based on dictionary Cellosaurus version 33 in PubDictionarieszebet2020-04-15
Cellosaurus_v35 Annotator based on dictionary Cellosaurus version 35 in PubDictionarieszebet2020-08-12
Covid-19_Glycan-Motif ISSAKU YAMADA2021-10-04
discourse-simplifier A discourse analyzer developed by Univ. Manchester.Jin-Dong Kim2019-08-16
EnjuParser Enju HPSG Parser developed by University of Tokyo.Jin-Dong Kim2020-12-31
FirstAuthorDictionay AikoHIRAKI2020-10-08
Glycan-Abbreviation ISSAKU YAMADA2019-07-17
GlycanIUPAC http://pubdictionaries.org/dictionaries/GlyTouCan-IUPAC_condensedkiyoko2021-01-19
Glycan-Motif-Image Jin-Dong Kim2022-11-09
GlyCosmosGlycans kiyoko2021-01-19
LappsGridBioNER The Abner Tagger for BioMedical named entity recognition running on the Language Applications Grid.ksuderman2018-04-14
LappsGridGeneTagger GATE Gene tagger running on the Language Applications Gridksuderman2018-04-14
LappsGridStanfordPOSTagger Stanford Part-Of-Speech tagger running on the Language Applications Grid.ksuderman2018-04-14
LappsGridTimeML TimeML event annotator from GATE running on the Language Applications Grid.ksuderman2018-04-14
OGER-TEXT At the moment, please don't send too much frequence requests.Jin-Dong Kim2021-01-20
OntoGeneER OntoGene Entity RecognitionNico Colic2020-03-26
PD-CHEBI Pubdictionaries annotation using the terms sourced from CHEBI, the 2020-03-31 versionJin-Dong Kim2021-12-14
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