> top > annotators

Annotators

Below is a list of pre-registered, automatic annotation services which are interoperable with PubAnnotation.

If you do not know an applicable annotation service to your purpose, you may want to take a look at PubDictionaries, which is a highly customizable, dictionary-based text annotation service.

NameDescription MaintainerUpdated_at

21-40 / 81 show all
PD-MeSH2022_C_and_F03-B MeSH 2022 Disease (C) + Mental Disorder (F03)yucca2021-12-22
PD-MeSH2022_CHEBI_tuned-B MeSH2022Chemical (Descriptors and Supplementary Concepts that have Tree Numbers beginning with D but not not D12, D13 or D17)+ CHEBI (excluding terms that match (\W|\d)*|\W*\w\W* , manually tuned yucca2021-12-23
PD-MeSH2022_C_F03_plus_allFN-B MeSH2022 C and F03, plus all false negativesyucca2021-12-22
PD-UBERON-AE It annotates for anatomical entities, based on the UBERON-AE dictionary on PubDictionaries. Threshold is set to 0.85.Jin-Dong Kim2021-10-03
PD-UBERON-AE-B It annotates for anatomical entities, based on the UBERON-AE dictionary on PubDictionaries. It used the default threshold, 0.85. It uses the batch mode annotation, and may be used for annotation to a large amount of documents.Jin-Dong Kim2021-12-03
PD-UBERON-AE-2023 It annotates for anatomical entities, based on the UBERON-AE-2023 dictionary on PubDictionaries. Threshold is set to 0.85.Jin-Dong Kim2023-12-14
GlycanIUPAC http://pubdictionaries.org/dictionaries/GlyTouCan-IUPAC_condensedkiyoko2021-01-19
LappsGridGeneTagger GATE Gene tagger running on the Language Applications Gridksuderman2018-04-14
EnjuParser Enju HPSG Parser developed by University of Tokyo.Jin-Dong Kim2020-12-31
PD_CHEBI_minus_symbols-B CHEBI manually tunedyucca2021-12-23
PD-GO-BP-B Biological Processes as defined in GOJin-Dong Kim2021-01-14
PD-FMA-PAE-B Batch mode annotator of PD-FMA-PAEJin-Dong Kim2022-04-18
PD-ORYZAGP-MSU Annotator created with OryzaGP dataset and MSU URIlarmande2021-01-22
PD-ORYZAGP-MSU-B Annotator created with OryzaGP and MSU URI in Batch modelarmande2021-01-22
PD-ORYZAGP Annotator based on PubDictionary OryzaGP Oryzabase URIlarmande2021-01-26
PD-ORYZAGP2022-SYMB Annotator based on PubDictionary OryzaGP2022 Oryzabase URIlarmande2022-08-10
PD-ORYZAGP-RAPDB-B annotator based on OryzaGP_RAPDB pub dictionary with batchlarmande2021-01-22
Cellosaurus_v35 Annotator based on dictionary Cellosaurus version 35 in PubDictionarieszebet2020-08-12
Cellosaurus_v33 Annotator based on dictionary Cellosaurus version 33 in PubDictionarieszebet2020-04-15
discourse-simplifier A discourse analyzer developed by Univ. Manchester.Jin-Dong Kim2019-08-16