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User 'Jin-Dong Kim'

Projects

NameT Description# Ann.Updated atStatus
1-10 / 46 show all
GO-BPAnnotation for biological processes as defined in the "Biological Process" subset of Gene Ontology35.4 K2016-06-04Developing
GO-MFAnnotation for molecular functions as defined in the "Molecular Function" subtree of Gene Ontology19.7 K2016-05-03Testing
DocumentLevelAnnotationSampleA sample project for document level annotation472017-06-19Testing
CRAFT-treebankPenn Treebank markup for each sentence of the Colorado Richly Annotated Full Text Corpus (CRAFT).844 K2015-11-19Beta
CHEMDNER-training-testThe training subset of the CHEMDNER corpus29.4 K2015-03-23Testing
bionlp-st-ge-2016-corefCoreference annotation to the benchmark data set (reference and test) of BioNLP-ST 2016 GE task. For detailed information, please refer to the benchmark reference data set (bionlp-st-ge-2016-reference) and benchmark test data set (bionlp-st-ge-2016-test).8532016-05-23Released
metamap-sampleSample annotation of MetaMep, produced by Aronson, et al. An overview of MetaMap: historical perspective and recent advances, JAMIA 201010.9 K2016-12-19Testing
GO-CCAnnotation for cellular components as defined in the "Cellular Component" subtree of Gene Ontology17.6 K2016-05-03Developing
uniprot-humanUniprot proteins for human21.9 K2016-04-25Testing
bionlp-st-ge-2016-test-proteinsProtein annotations to the benchmark test data set of the BioNLP-ST 2016 GE task. A participant of the GE task may import the documents and annotations of this project to his/her own project, to begin with producing event annotations. For more details, please refer to the benchmark test data set (bionlp-st-ge-2016-test). 4.34 K2016-05-04Released

Automatic annotators

NameDescription
1-7 / 7
TextSentencersentence segmentation
EnjuParserEnju HPSG Parser developed by University of Tokyo.
PD-UBERON-AE-BIt annotates for anatomical entities, based on the UBERON-AE dictionary on PubDictionaries. It used the default threshold, 0.85. It uses the batch mode annotation, and may be used for annotation to a large amount of documents.
PD-GlycoGenes-B
PD-Preeclampsia-B
PD-UBERON-AEIt annotates for anatomical entities, based on the UBERON-AE dictionary on PubDictionaries. Threshold is set to 0.85.
PD-GlycoEpitope-BA batch annotator using PubDictionaries with the dictionary 'GlycoEpitope'

Editors

NameDescription
1-2 / 2
TextAE-DevIt is a development version of TextAE. While this version has richer features, there is a chance of some bugs.
TextAEIt is a "Text Annotation Editor" developed by DBCLS. It is developed as a model implementation of PubAnnotation-interoperable viewer/editor.