| GO-BP | | Annotation for biological processes as defined in the "Biological Process" subset of Gene Ontology | 35.4 K | DBCLS | Jin-Dong Kim | 2023-11-29 | Developing | |
| GO-MF | | Annotation for molecular functions as defined in the "Molecular Function" subtree of Gene Ontology | 19.7 K | DBCLS | Jin-Dong Kim | 2023-12-04 | Testing | |
| LitCovid-sample-CHEBI | | | 1.44 K | | Jin-Dong Kim | 2023-11-29 | Testing | |
| CORD-19_bioRxiv_medRxiv_subset | | The bioRxiv/medRxiv subset of the CORD-19 dataset: pre-prints that are not peer reviewed.
The documents in this project will be updated as the CORD-19 dataset grows.
See the COVID DATASET LICENSE AGREEMENT.
| 0 | | Jin-Dong Kim | 2023-11-29 | Released | |
| LitCovid-GlycoBiology | | Articles from GlycoBiology, received by the keyword "Covid-19" | 0 | | Jin-Dong Kim | 2023-11-29 | Testing | |
| DisGeNET | | Disease-Gene association annotation. | 3.12 M | Nuria Queralt | Jin-Dong Kim | 2023-11-24 | Beta | |
| GlyCosmos600-GlycanStructure | | | 97 | | Jin-Dong Kim | 2023-11-29 | Testing | |
| glycobiology-test | | | 27 | | Jin-Dong Kim | 2023-11-29 | Developing | |
| GlyCosmos6-HP | | | 0 | | Jin-Dong Kim | 2023-11-28 | | |
| CORD-19-sample-HP | | | 39 | | Jin-Dong Kim | 2023-11-27 | Developing | |
| GlyCosmos600-docs | | A random collection of 600 PubMed abstracts from 6 glycobiology-related journals: Glycobiology, Glycoconjugate journal, The Journal of biological chemistry, Journal of proteome research, Journal of proteomics, and Carbohydrate research. The whole PMIDs were collected on June 11, 2019. From each journal, 100 PMIDs were randomly sampled. | 0 | | Jin-Dong Kim | 2023-11-29 | Released | |
| LitCoin-PubTator-for-Tuning | | A set of randomly selected PubMed articles with PubTator annotation.
The labels of PubTator annotations are converted to corresponding labels for LitCoin as follows:
'Gene' -> 'GeneOrGeneProduct',
'Disease' -> 'DiseaseOrPhenotypicFeature',
'Chemical' -> 'ChemicalEntity'
'Species' -> 'OrganismTaxon'
'Mutation' -> 'SequenceVariant'
'CellLine' -> 'CellLine' | 14.2 K | | Jin-Dong Kim | 2023-11-29 | | |
| LitCovid-TimeML | | | 426 K | | Jin-Dong Kim | 2023-11-29 | Developing | |
| LitCovid-sentences-v1 | | Sentence segmentation of all the texts in the LitCovid literature. The segmentation is automatically obtained using the TextSentencer annotation service developed and maintained by DBCLS. | 16.5 K | | Jin-Dong Kim | 2023-11-27 | Released | |
| ICD10 | | Annotation for disease names as defined in ICD10 | 1.6 K | DBCLS | Jin-Dong Kim | 2023-11-29 | Developing | |
| uniprot-mouse | | Protein annotation based on UniProt | 11.5 K | | Jin-Dong Kim | 2023-11-28 | Developing | |
| LitCovid-PubTator | | | 5.88 M | | Jin-Dong Kim | 2023-11-24 | Beta | |
| LitCovid-PD-FMA-UBERON | | | 1.3 M | | Jin-Dong Kim | 2023-11-28 | Developing | |
| GlycoConjugate-collection | | The PubMed entries (titles and abstracts) from the journal of GlycoConjugate | 0 | | Jin-Dong Kim | 2023-11-28 | Developing | |
| LitCovid-sample-Pubtator | | | 3.86 K | | Jin-Dong Kim | 2023-11-28 | Uploading | |
