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NameTDescription# Ann.AuthorMaintainer Updated_atStatus

1-20 / 143 show all
LitCovid-PD-CHEBI 1.44 Madmin2020-11-30Developing
Preeclampsia A collection of titles and abstracts of "Preeclampsia"-related papers. They were extracted from PubMed using the MeSH term "Preeclampsia" and specifying the language to be "English, on 11th September, 2017. The texts were then annotated by PubDictionaries using the dictionary "Preeclampsia".58.9 Kcallahan_tiff2019-01-30Developing
sonoma _10.4 KStandigm2021-01-16Beta
sonoma2 sonoma29.07 KStandigmchanung2020-12-20Beta
craft-sa-dev Development data for CRAFT SA shared task. This project contains the development (training) annotations for the Structural Annotation task of the CRAFT Shared Task 2019. This particular set contains token and sentence annotations with tokens linked via dependency relations. These dependency relations were automatically generated using the manually curated CRAFT constituency treebank files as input.490 KUniversity of Colorado Anschutz Medical Campuscraft-st2020-10-02Released
SPECIES800_autotagged This project comprises the SPECIES800 corpus documents automatically annotated by the Jensenlab tagger. Annotated entity types are: Genes/proteins from the mentioned organisms (and any human ones) PubChem Compound identifiers NCBI Taxonomy entries Gene Ontology cellular component terms BRENDA Tissue Ontology terms Disease Ontology terms Environment Ontology terms The SPECIES 800 (S800) comprises 800 PubMed abstracts. In its original form species mentions were manually identified and mapped to the corresponding NCBI Taxonomy identifiers. Described in: The SPECIES and ORGANISMS Resources for Fast and Accurate Identification of Taxonomic Names in Text. Pafilis E, Frankild SP, Fanini L, Faulwetter S, Pavloudi C, et al. (2013). PLoS ONE, 2013, 8(6): e65390. doi:10.1371/journal.pone.0065390. The manually annotated corpus is also available as a PubAnnotation project (see here). 0Evangelos Pafilis, Sampo Pyysalo, Lars Juhl Jensenevangelos2015-11-20Testing
glycosmos-test-structure-v1 471ISSAKU YAMADA2019-06-11Testing
glycosmos-test-glycan-structure 448ISSAKU YAMADA2019-06-11Testing
Preeclampsia-compare 67.4 KJin-Dong Kim2019-01-31Testing
DisGeNET Disease-Gene association annotation.3.12 MNuria Queralt Jin-Dong Kim2020-11-10Beta
GlyCosmos600-GlycoProteins GlycoProtein annotations were made using the glycoprotein-name dictionary on PubDictionaries: http://pubannotation.org/projects/GlyCosmos600-docs The documents were imported from the GlyCosmos600-docs project: http://pubannotation.org/projects/GlyCosmos600-docs3.68 KJin-Dong Kim2019-07-15Testing
uniprot-mouse Protein annotation based on UniProt11.5 KJin-Dong Kim2016-04-27Developing
GlycoBiology-FMA FMA ontology-based annotation to GlycoBiology abstracts96.3 KJin-Dong Kim2020-02-05Testing
EDAM-DFO annotation for EDAM terms for data, formats, and operations12.5 KJin-Dong Kim2016-09-21Testing
pubtator-sample Sample annotation of PubTator produced by Zhiyong Lu et al.28Zhiyong LuJin-Dong Kim2020-11-16Testing
GlycoConjugate-collection The PubMed entries (titles and abstracts) from the journal of GlycoConjugate0Jin-Dong Kim2018-02-09Developing
LitCovid-sample-PD-HP 211Jin-Dong Kim2021-01-16Testing
BioASQ-sample collection of PubMed articles which appear in the BioASQ sample data set.0BioASQJin-Dong Kim2015-10-13Testing
GlyCosmos600-MAT 863Jin-Dong Kim2019-07-10Testing
PubMed-2017 abstracts published in 2017.0Jin-Dong Kim2017-09-01Developing
NameT# Ann.AuthorMaintainer Updated_atStatus

1-20 / 143 show all
LitCovid-PD-CHEBI 1.44 Madmin2020-11-30Developing
Preeclampsia 58.9 Kcallahan_tiff2019-01-30Developing
sonoma 10.4 KStandigm2021-01-16Beta
sonoma2 9.07 KStandigmchanung2020-12-20Beta
craft-sa-dev 490 KUniversity of Colorado Anschutz Medical Campuscraft-st2020-10-02Released
SPECIES800_autotagged 0Evangelos Pafilis, Sampo Pyysalo, Lars Juhl Jensenevangelos2015-11-20Testing
glycosmos-test-structure-v1 471ISSAKU YAMADA2019-06-11Testing
glycosmos-test-glycan-structure 448ISSAKU YAMADA2019-06-11Testing
Preeclampsia-compare 67.4 KJin-Dong Kim2019-01-31Testing
DisGeNET 3.12 MNuria Queralt Jin-Dong Kim2020-11-10Beta
GlyCosmos600-GlycoProteins 3.68 KJin-Dong Kim2019-07-15Testing
uniprot-mouse 11.5 KJin-Dong Kim2016-04-27Developing
GlycoBiology-FMA 96.3 KJin-Dong Kim2020-02-05Testing
EDAM-DFO 12.5 KJin-Dong Kim2016-09-21Testing
pubtator-sample 28Zhiyong LuJin-Dong Kim2020-11-16Testing
GlycoConjugate-collection 0Jin-Dong Kim2018-02-09Developing
LitCovid-sample-PD-HP 211Jin-Dong Kim2021-01-16Testing
BioASQ-sample 0BioASQJin-Dong Kim2015-10-13Testing
GlyCosmos600-MAT 863Jin-Dong Kim2019-07-10Testing
PubMed-2017 0Jin-Dong Kim2017-09-01Developing