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NameTDescription# Ann.AuthorMaintainer Updated_atStatus

1-20 / 119 show all
Preeclampsia A collection of titles and abstracts of "Preeclampsia"-related papers. They were extracted from PubMed using the MeSH term "Preeclampsia" and specifying the language to be "English, on 11th September, 2017. The texts were then annotated by PubDictionaries using the dictionary "Preeclampsia".58.9 Kcallahan_tiff2019-01-30Developing
craft-sa-dev Development data for CRAFT SA shared task. This project contains the development (training) annotations for the Structural Annotation task of the CRAFT Shared Task 2019. This particular set contains token and sentence annotations with tokens linked via dependency relations. These dependency relations were automatically generated using the manually curated CRAFT constituency treebank files as input.512 KUniversity of Colorado Anschutz Medical Campuscraft-st2019-03-25Released
SPECIES800_autotagged This project comprises the SPECIES800 corpus documents automatically annotated by the Jensenlab tagger. Annotated entity types are: Genes/proteins from the mentioned organisms (and any human ones) PubChem Compound identifiers NCBI Taxonomy entries Gene Ontology cellular component terms BRENDA Tissue Ontology terms Disease Ontology terms Environment Ontology terms The SPECIES 800 (S800) comprises 800 PubMed abstracts. In its original form species mentions were manually identified and mapped to the corresponding NCBI Taxonomy identifiers. Described in: The SPECIES and ORGANISMS Resources for Fast and Accurate Identification of Taxonomic Names in Text. Pafilis E, Frankild SP, Fanini L, Faulwetter S, Pavloudi C, et al. (2013). PLoS ONE, 2013, 8(6): e65390. doi:10.1371/journal.pone.0065390. The manually annotated corpus is also available as a PubAnnotation project (see here). 0Evangelos Pafilis, Sampo Pyysalo, Lars Juhl Jensenevangelos2015-11-20Testing
glycosmos-test-structure-v1 471ISSAKU YAMADA2019-06-11Testing
glycosmos-test-glycan-structure 448ISSAKU YAMADA2019-06-11Testing
GlycoBiology-GO GO-based annotation to GlycoBiology abstracts0Jin-Dong Kim2016-06-11Testing
bionlp-st-ge-2016-reference-eval 426Jin-Dong Kim2019-05-01Testing
DisGeNet-2017-sample 2.93 KJin-Dong Kim2017-09-25Testing
ICD10 Annotation for disease names as defined in ICD101.6 KDBCLSJin-Dong Kim2016-05-04Developing
pubtator-sample Sample annotation of PubTator produced by Zhiyong Lu et al.28Zhiyong LuJin-Dong Kim2016-01-19Testing
EDAM-DFO annotation for EDAM terms for data, formats, and operations12.5 KJin-Dong Kim2016-09-21Testing
bionlp-st-ge-2016-uniprot UniProt protein annotation to the benchmark data set of BioNLP-ST 2016 GE task: reference data set (bionlp-st-ge-2016-reference) and test data set (bionlp-st-ge-2016-test). The annotations are produced based on a dictionary which is semi-automatically compiled for the 34 full paper articles included in the benchmark data set (20 in the reference data set + 14 in the test data set). For detailed information about BioNLP-ST GE 2016 task data sets, please refer to the benchmark reference data set (bionlp-st-ge-2016-reference) and benchmark test data set (bionlp-st-ge-2016-test). 16.2 KDBCLSJin-Dong Kim2016-05-22Beta
GlyCosmos600-MAT 863Jin-Dong Kim2019-07-10Testing
pmc-enju-pas Predicate-argument structure annotation produced by Enju. This data set is initially produced as a supporting resource for BioNLP-ST 2016 GE task. As so, it currently includes the 34 full paper articles that are in the benchmark data sets of GE 2016 task, reference data set (bionlp-st-ge-2016-reference) and test data set (bionlp-st-ge-2016-test), but will be extended to include more papers from the PubMed Central Open Access subset (PMCOA). 205 KDBCLSJin-Dong Kim2017-11-07Developing
GlycoBiology-FMA FMA ontology-based annotation to GlycoBiology abstracts96.3 KJin-Dong Kim2020-02-05Testing
DisGeNET Disease-Gene association annotation.3.12 MNuria Queralt Jin-Dong Kim2016-01-28Beta
BioASQ-sample collection of PubMed articles which appear in the BioASQ sample data set.0BioASQJin-Dong Kim2015-10-13Testing
EDAM-topics annotation for EDAM topics11.6 KJin-Dong Kim2016-09-21Testing
uniprot-mouse Protein annotation based on UniProt11.5 KJin-Dong Kim2016-04-27Developing
sentences Sentence segmentation annotation1.27 MDBCLSJin-Dong Kim2019-07-11Testing
NameT# Ann.AuthorMaintainer Updated_atStatus

1-20 / 119 show all
Preeclampsia 58.9 Kcallahan_tiff2019-01-30Developing
craft-sa-dev 512 KUniversity of Colorado Anschutz Medical Campuscraft-st2019-03-25Released
SPECIES800_autotagged 0Evangelos Pafilis, Sampo Pyysalo, Lars Juhl Jensenevangelos2015-11-20Testing
glycosmos-test-structure-v1 471ISSAKU YAMADA2019-06-11Testing
glycosmos-test-glycan-structure 448ISSAKU YAMADA2019-06-11Testing
GlycoBiology-GO 0Jin-Dong Kim2016-06-11Testing
bionlp-st-ge-2016-reference-eval 426Jin-Dong Kim2019-05-01Testing
DisGeNet-2017-sample 2.93 KJin-Dong Kim2017-09-25Testing
ICD10 1.6 KDBCLSJin-Dong Kim2016-05-04Developing
pubtator-sample 28Zhiyong LuJin-Dong Kim2016-01-19Testing
EDAM-DFO 12.5 KJin-Dong Kim2016-09-21Testing
bionlp-st-ge-2016-uniprot 16.2 KDBCLSJin-Dong Kim2016-05-22Beta
GlyCosmos600-MAT 863Jin-Dong Kim2019-07-10Testing
pmc-enju-pas 205 KDBCLSJin-Dong Kim2017-11-07Developing
GlycoBiology-FMA 96.3 KJin-Dong Kim2020-02-05Testing
DisGeNET 3.12 MNuria Queralt Jin-Dong Kim2016-01-28Beta
BioASQ-sample 0BioASQJin-Dong Kim2015-10-13Testing
EDAM-topics 11.6 KJin-Dong Kim2016-09-21Testing
uniprot-mouse 11.5 KJin-Dong Kim2016-04-27Developing
sentences 1.27 MDBCLSJin-Dong Kim2019-07-11Testing