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NameTDescription# Ann. AuthorMaintainerUpdated_atStatus

81-100 / 316 show all
SPECIES800 SPECIES 800 (S800): an abstract-based manually annotated corpus. S800 comprises 800 PubMed abstracts in which organism mentions were identified and mapped to the corresponding NCBI Taxonomy identifiers. Described in: The SPECIES and ORGANISMS Resources for Fast and Accurate Identification of Taxonomic Names in Text. Pafilis E, Frankild SP, Fanini L, Faulwetter S, Pavloudi C, et al. (2013). PLoS ONE, 2013, 8(6): e65390. doi:10.1371/journal.pone.00653903.71 KEvangelos Pafilis, Sune P. Frankild, Lucia Fanini, Sarah Faulwetter, Christina Pavloudi, Aikaterini Vasileiadou, Christos Arvanitidis, Lars Juhl Jensenevangelos2023-11-28Released
bionlp-ost-19-BB-rel-ner-train 3.62 Kldeleger2023-11-28Developing
bionlp-ost-19-BB-kb-ner-train 3.56 Kldeleger2023-11-28Developing
Lectin 3.52 Kangata2023-11-28
bionlp-ost-19-BB-rel-train 3.52 Kldeleger2023-11-28Developing
bionlp-ost-19-BB-kb-train 3.45 Kldeleger2023-11-26Developing
Colil Colil (Comments on Literature in Literature) is a search service for citation contexts utilized in the biomedical domain. Colil searches for a cited paper in the Colil database and then returns a list of the citation contexts for it and its relevant papers based on co-citations.3.34 KDBCLSToyofumi Fujiwara2023-11-28Testing
name_no 3.33 Kzhoukaiyin2023-11-28
kaiyin_test 3.33 Kzhoukaiyin2023-11-26
CORD-19_HIRAKI HIRAKI Annotation for CORD-192.98 KAikoHIRAKI2023-11-29Testing
MeasurableQuantitativeAnnotation A collection and annotation the measurable quantity information from 3202 pubmed article, which can be used for the task of extracting measurable quantity information. Annotation category: entity, num, unit.2.84 KWenjieNie2023-11-29Testing
glycogenes 2.75 KJin-Dong Kim2023-11-30Testing
bionlp-st-gro-2013-development The development data set of the BioNLP-ST 2013 GRO task, including 50 MEDLINE abstracts that are annotated with concepts and relations of the Gene Regulation Ontology (GRO; http://www.ebi.ac.uk/Rebholz-srv/GRO/GRO.html)2.66 KJung-jae KimJung-jae Kim2023-11-29Testing
bionlp-ost-19-SeeDev-bin-dev 2.58 Kldeleger2023-11-28Developing
bionlp-ost-19-BB-norm-ner-train 2.45 Kldeleger2023-11-29Developing
bionlp-ost-19-BB-norm-train 2.45 Kldeleger2023-11-29Developing
GGDB-2020 2.44 Kangata2023-11-30Developing
Ab3P-abbreviations This corpus was developed during the creation of the Ab3P abbreviation definition identification tool. It includes 1250 manually annotated MEDLINE records. This gold standard includes 1221 abbreviation-definition pairs. Abbreviation definition identification based on automatic precision estimates Sunghwan Sohn, Donald C Comeau, Won Kim and W John Wilbur BMC Bioinformatics20089:402 DOI: 10.1186/1471-2105-9-4022.33 KSunghwan Sohn, Donald C Comeau, Won Kim and W John Wilburcomeau2023-11-29Beta
bionlp-ost-19-SeeDev-bin-test 2.32 Kldeleger2023-11-28Developing
LocText The manually annotated corpus consists of 100 PubMed abstracts annotated for proteins, subcellular localizations, organisms and relations between them. The focus of the corpus is on annotation of proteins and their subcellular localizations.2.29 KGoldberg et alShrikant Vinchurkar2023-11-29Released
NameT# Ann. AuthorMaintainerUpdated_atStatus

81-100 / 316 show all
SPECIES800 3.71 KEvangelos Pafilis, Sune P. Frankild, Lucia Fanini, Sarah Faulwetter, Christina Pavloudi, Aikaterini Vasileiadou, Christos Arvanitidis, Lars Juhl Jensenevangelos2023-11-28Released
bionlp-ost-19-BB-rel-ner-train 3.62 Kldeleger2023-11-28Developing
bionlp-ost-19-BB-kb-ner-train 3.56 Kldeleger2023-11-28Developing
Lectin 3.52 Kangata2023-11-28
bionlp-ost-19-BB-rel-train 3.52 Kldeleger2023-11-28Developing
bionlp-ost-19-BB-kb-train 3.45 Kldeleger2023-11-26Developing
Colil 3.34 KDBCLSToyofumi Fujiwara2023-11-28Testing
name_no 3.33 Kzhoukaiyin2023-11-28
kaiyin_test 3.33 Kzhoukaiyin2023-11-26
CORD-19_HIRAKI 2.98 KAikoHIRAKI2023-11-29Testing
MeasurableQuantitativeAnnotation 2.84 KWenjieNie2023-11-29Testing
glycogenes 2.75 KJin-Dong Kim2023-11-30Testing
bionlp-st-gro-2013-development 2.66 KJung-jae KimJung-jae Kim2023-11-29Testing
bionlp-ost-19-SeeDev-bin-dev 2.58 Kldeleger2023-11-28Developing
bionlp-ost-19-BB-norm-ner-train 2.45 Kldeleger2023-11-29Developing
bionlp-ost-19-BB-norm-train 2.45 Kldeleger2023-11-29Developing
GGDB-2020 2.44 Kangata2023-11-30Developing
Ab3P-abbreviations 2.33 KSunghwan Sohn, Donald C Comeau, Won Kim and W John Wilburcomeau2023-11-29Beta
bionlp-ost-19-SeeDev-bin-test 2.32 Kldeleger2023-11-28Developing
LocText 2.29 KGoldberg et alShrikant Vinchurkar2023-11-29Released