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PMC:329117 / 21371-22179 JSONTXT 4 Projects

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Id Subject Object Predicate Lexical cue
T5874 0-2 RB denotes At
T5875 3-8 RBS denotes least
T5876 9-13 NN denotes half
T5878 14-16 IN denotes of
T5879 17-20 DT denotes the
T5881 21-30 JJ denotes olfactory
T5880 31-40 NNS denotes receptors
T5882 41-52 VBN denotes represented
T5883 53-55 IN denotes in
T5884 56-59 PRP$ denotes our
T5886 60-64 NN denotes cDNA
T5885 65-75 NN denotes collection
T5877 76-83 VBP denotes utilize
T5887 84-88 JJR denotes more
T5889 89-93 IN denotes than
T5888 94-97 CD denotes one
T5891 98-113 NN denotes polyadenylation
T5890 114-118 NN denotes site
T5892 118-120 , denotes ,
T5893 120-129 VBG denotes resulting
T5894 130-132 IN denotes in
T5895 133-144 JJ denotes alternative
T5897 145-146 CD denotes 3
T5899 146-147 SYM denotes '
T5898 148-151 NN denotes UTR
T5896 152-160 NNS denotes isoforms
T5900 160-161 . denotes .
T5901 161-293 sentence denotes We have crudely estimated 3' UTR size for 1,169 cDNA clones by combining approximate insert size information with 5' sequence data.
T5902 162-164 PRP denotes We
T5904 165-169 VBP denotes have
T5905 170-177 RB denotes crudely
T5903 178-187 VBN denotes estimated
T5906 188-189 CD denotes 3
T5908 189-190 SYM denotes '
T5907 191-194 NN denotes UTR
T5909 195-199 NN denotes size
T5910 200-203 IN denotes for
T5911 204-209 CD denotes 1,169
T5913 210-214 NN denotes cDNA
T5912 215-221 NNS denotes clones
T5914 222-224 IN denotes by
T5915 225-234 VBG denotes combining
T5916 235-246 JJ denotes approximate
T5918 247-253 NN denotes insert
T5917 254-258 NN denotes size
T5919 259-270 NN denotes information
T5920 271-275 IN denotes with
T5921 276-277 CD denotes 5
T5923 277-278 SYM denotes '
T5922 279-287 NN denotes sequence
T5924 288-292 NNS denotes data
T5925 292-293 . denotes .
T5926 293-434 sentence denotes More than one 3' UTR isoform is predicted for 43 of the 77 (56%) genes for which there are at least four cDNAs with 3' UTR size information.
T5927 294-298 JJR denotes More
T5929 299-303 IN denotes than
T5928 304-307 CD denotes one
T5931 308-309 CD denotes 3
T5933 309-310 SYM denotes '
T5932 311-314 NN denotes UTR
T5930 315-322 NN denotes isoform
T5935 323-325 VBZ denotes is
T5934 326-335 VBN denotes predicted
T5936 336-339 IN denotes for
T5937 340-342 CD denotes 43
T5939 343-345 IN denotes of
T5940 346-349 DT denotes the
T5938 350-352 CD denotes 77
T5942 353-354 -LRB- denotes (
T5944 354-356 CD denotes 56
T5943 356-357 NN denotes %
T5945 357-358 -RRB- denotes )
T5941 359-364 NNS denotes genes
T5946 365-368 IN denotes for
T5948 369-374 WDT denotes which
T5949 375-380 EX denotes there
T5947 381-384 VBP denotes are
T5950 385-387 RB denotes at
T5952 388-393 RBS denotes least
T5951 394-398 CD denotes four
T5953 399-404 NNS denotes cDNAs
T5954 405-409 IN denotes with
T5955 410-411 CD denotes 3
T5957 411-412 SYM denotes '
T5956 413-416 NN denotes UTR
T5958 417-421 NN denotes size
T5959 422-433 NN denotes information
T5960 433-434 . denotes .
T5961 434-567 sentence denotes We confirmed the alternative polyadenylation isoforms of four out of five selected genes by sequencing the 3' end of 14 cDNA clones.
T5962 435-437 PRP denotes We
T5963 438-447 VBD denotes confirmed
T5964 448-451 DT denotes the
T5966 452-463 JJ denotes alternative
T5967 464-479 NN denotes polyadenylation
T5965 480-488 NNS denotes isoforms
T5968 489-491 IN denotes of
T5969 492-496 CD denotes four
T5971 497-500 IN denotes out
T5972 501-503 IN denotes of
T5970 504-508 CD denotes five
T5974 509-517 VBN denotes selected
T5973 518-523 NNS denotes genes
T5975 524-526 IN denotes by
T5976 527-537 VBG denotes sequencing
T5977 538-541 DT denotes the
T5979 542-543 CD denotes 3
T5980 543-544 SYM denotes '
T5978 545-548 NN denotes end
T5981 549-551 IN denotes of
T5982 552-554 CD denotes 14
T5984 555-559 NN denotes cDNA
T5983 560-566 NNS denotes clones
T5985 566-567 . denotes .
T5986 567-808 sentence denotes These 14 sequences also revealed one cDNA where the poly(A) tail was added 27 bp before the stop codon, and another where an intron was spliced out of the 3' UTR, contrary to the conventional stereotype of olfactory receptor gene structure.
T5987 568-573 DT denotes These
T5989 574-576 CD denotes 14
T5988 577-586 NNS denotes sequences
T5991 587-591 RB denotes also
T5990 592-600 VBD denotes revealed
T5992 601-604 CD denotes one
T5993 605-609 NN denotes cDNA
T5994 610-615 WRB denotes where
T5996 616-619 DT denotes the
T5998 620-624 NN denotes poly
T5999 624-625 -LRB- denotes (
T6000 625-626 NN denotes A
T6001 626-627 -RRB- denotes )
T5997 628-632 NN denotes tail
T6002 633-636 VBD denotes was
T5995 637-642 VBN denotes added
T6003 643-645 CD denotes 27
T6004 646-648 NN denotes bp
T6005 649-655 IN denotes before
T6006 656-659 DT denotes the
T6008 660-664 NN denotes stop
T6007 665-670 NN denotes codon
T6009 670-672 , denotes ,
T6010 672-675 CC denotes and
T6011 676-683 DT denotes another
T6012 684-689 WRB denotes where
T6014 690-692 DT denotes an
T6015 693-699 NN denotes intron
T6016 700-703 VBD denotes was
T6013 704-711 VBN denotes spliced
T6017 712-715 IN denotes out
T6018 716-718 IN denotes of
T6019 719-722 DT denotes the
T6021 723-724 CD denotes 3
T6022 724-725 SYM denotes '
T6020 726-729 NN denotes UTR
T6023 729-731 , denotes ,
T6024 731-739 JJ denotes contrary
T6025 740-742 IN denotes to
T6026 743-746 DT denotes the
T6028 747-759 JJ denotes conventional
T6027 760-770 NN denotes stereotype
T6029 771-773 IN denotes of
T6030 774-783 JJ denotes olfactory
T6031 784-792 NN denotes receptor
T6032 793-797 NN denotes gene
T6033 798-807 NN denotes structure
T6034 807-808 . denotes .
R3660 T5874 T5875 advmod At,least
R3661 T5875 T5876 advmod least,half
R3662 T5876 T5877 nsubj half,utilize
R3663 T5878 T5876 prep of,half
R3664 T5879 T5880 det the,receptors
R3665 T5880 T5878 pobj receptors,of
R3666 T5881 T5880 amod olfactory,receptors
R3667 T5882 T5880 acl represented,receptors
R3668 T5883 T5882 prep in,represented
R3669 T5884 T5885 poss our,collection
R3670 T5885 T5883 pobj collection,in
R3671 T5886 T5885 compound cDNA,collection
R3672 T5887 T5888 amod more,one
R3673 T5888 T5890 nummod one,site
R3674 T5889 T5888 quantmod than,one
R3675 T5890 T5877 dobj site,utilize
R3676 T5891 T5890 compound polyadenylation,site
R3677 T5892 T5877 punct ", ",utilize
R3678 T5893 T5877 advcl resulting,utilize
R3679 T5894 T5893 prep in,resulting
R3680 T5895 T5896 amod alternative,isoforms
R3681 T5896 T5894 pobj isoforms,in
R3682 T5897 T5898 nummod 3,UTR
R3683 T5898 T5896 compound UTR,isoforms
R3684 T5899 T5897 punct ',3
R3685 T5900 T5877 punct .,utilize
R3686 T5902 T5903 nsubj We,estimated
R3687 T5904 T5903 aux have,estimated
R3688 T5905 T5903 advmod crudely,estimated
R3689 T5906 T5907 nummod 3,UTR
R3690 T5907 T5909 compound UTR,size
R3691 T5908 T5907 punct ',UTR
R3692 T5909 T5903 dobj size,estimated
R3693 T5910 T5903 prep for,estimated
R3694 T5911 T5912 nummod "1,169",clones
R3695 T5912 T5910 pobj clones,for
R3696 T5913 T5912 compound cDNA,clones
R3697 T5914 T5903 prep by,estimated
R3698 T5915 T5914 pcomp combining,by
R3699 T5916 T5917 amod approximate,size
R3700 T5917 T5919 compound size,information
R3701 T5918 T5917 compound insert,size
R3702 T5919 T5915 dobj information,combining
R3703 T5920 T5915 prep with,combining
R3704 T5921 T5922 nummod 5,sequence
R3705 T5922 T5924 compound sequence,data
R3706 T5923 T5921 punct ',5
R3707 T5924 T5920 pobj data,with
R3708 T5925 T5903 punct .,estimated
R3709 T5927 T5928 amod More,one
R3710 T5928 T5930 nummod one,isoform
R3711 T5929 T5928 quantmod than,one
R3712 T5930 T5934 nsubjpass isoform,predicted
R3713 T5931 T5932 nummod 3,UTR
R3714 T5932 T5930 compound UTR,isoform
R3715 T5933 T5931 punct ',3
R3716 T5935 T5934 auxpass is,predicted
R3717 T5936 T5934 prep for,predicted
R3718 T5937 T5938 quantmod 43,77
R3719 T5938 T5941 nummod 77,genes
R3720 T5939 T5938 quantmod of,77
R3721 T5940 T5938 quantmod the,77
R3722 T5941 T5936 pobj genes,for
R3723 T5942 T5943 punct (,%
R3724 T5943 T5938 parataxis %,77
R3725 T5944 T5943 nummod 56,%
R3726 T5945 T5943 punct ),%
R3727 T5946 T5947 prep for,are
R3728 T5947 T5941 relcl are,genes
R3729 T5948 T5946 pobj which,for
R3730 T5949 T5947 expl there,are
R3731 T5950 T5951 advmod at,four
R3732 T5951 T5953 nummod four,cDNAs
R3733 T5952 T5951 advmod least,four
R3734 T5953 T5947 attr cDNAs,are
R3735 T5954 T5953 prep with,cDNAs
R3736 T5955 T5956 nummod 3,UTR
R3737 T5956 T5958 compound UTR,size
R3738 T5957 T5955 punct ',3
R3739 T5958 T5959 compound size,information
R3740 T5959 T5954 pobj information,with
R3741 T5960 T5934 punct .,predicted
R3742 T5962 T5963 nsubj We,confirmed
R3743 T5964 T5965 det the,isoforms
R3744 T5965 T5963 dobj isoforms,confirmed
R3745 T5966 T5967 amod alternative,polyadenylation
R3746 T5967 T5965 compound polyadenylation,isoforms
R3747 T5968 T5965 prep of,isoforms
R3748 T5969 T5970 quantmod four,five
R3749 T5970 T5973 nummod five,genes
R3750 T5971 T5970 quantmod out,five
R3751 T5972 T5970 quantmod of,five
R3752 T5973 T5968 pobj genes,of
R3753 T5974 T5973 amod selected,genes
R3754 T5975 T5963 prep by,confirmed
R3755 T5976 T5975 pcomp sequencing,by
R3756 T5977 T5978 det the,end
R3757 T5978 T5976 dobj end,sequencing
R3758 T5979 T5978 nummod 3,end
R3759 T5980 T5979 punct ',3
R3760 T5981 T5978 prep of,end
R3761 T5982 T5983 nummod 14,clones
R3762 T5983 T5981 pobj clones,of
R3763 T5984 T5983 compound cDNA,clones
R3764 T5985 T5963 punct .,confirmed
R3765 T5987 T5988 det These,sequences
R3766 T5988 T5990 nsubj sequences,revealed
R3767 T5989 T5988 nummod 14,sequences
R3768 T5991 T5990 advmod also,revealed
R3769 T5992 T5993 nummod one,cDNA
R3770 T5993 T5990 dobj cDNA,revealed
R3771 T5994 T5995 advmod where,added
R3772 T5995 T5993 relcl added,cDNA
R3773 T5996 T5997 det the,tail
R3774 T5997 T5995 nsubjpass tail,added
R3775 T5998 T5997 nmod poly,tail
R3776 T5999 T6000 punct (,A
R3777 T6000 T5997 parataxis A,tail
R3778 T6001 T6000 punct ),A
R3779 T6002 T5995 auxpass was,added
R3780 T6003 T6004 nummod 27,bp
R3781 T6004 T6005 npadvmod bp,before
R3782 T6005 T5995 prep before,added
R3783 T6006 T6007 det the,codon
R3784 T6007 T6005 pobj codon,before
R3785 T6008 T6007 compound stop,codon
R3786 T6009 T5993 punct ", ",cDNA
R3787 T6010 T5993 cc and,cDNA
R3788 T6011 T5993 conj another,cDNA
R3789 T6012 T6013 advmod where,spliced
R3790 T6013 T6011 relcl spliced,another
R3791 T6014 T6015 det an,intron
R3792 T6015 T6013 nsubjpass intron,spliced
R3793 T6016 T6013 auxpass was,spliced
R3794 T6017 T6013 prep out,spliced
R3795 T6018 T6017 prep of,out
R3796 T6019 T6020 det the,UTR
R3797 T6020 T6018 pobj UTR,of
R3798 T6021 T6020 nummod 3,UTR
R3799 T6022 T6021 punct ',3
R3800 T6023 T5990 punct ", ",revealed
R3801 T6024 T5990 advcl contrary,revealed
R3802 T6025 T6024 prep to,contrary
R3803 T6026 T6027 det the,stereotype
R3804 T6027 T6025 pobj stereotype,to
R3805 T6028 T6027 amod conventional,stereotype
R3806 T6029 T6027 prep of,stereotype
R3807 T6030 T6031 amod olfactory,receptor
R3808 T6031 T6032 compound receptor,gene
R3809 T6032 T6033 compound gene,structure
R3810 T6033 T6029 pobj structure,of
R3811 T6034 T5990 punct .,revealed