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PMC:1892049 / 9772-10755 JSONTXT 5 Projects

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Id Subject Object Predicate Lexical cue
T15087 0-3 DT denotes The
T15089 4-9 JJ denotes upper
T15090 10-13 CC denotes and
T15091 14-19 JJ denotes lower
T15088 20-25 NNS denotes plots
T15092 26-29 VBP denotes are
T15093 30-33 NN denotes log
T15094 34-35 NN denotes R
T15095 36-41 NN denotes ratio
T15096 42-45 CC denotes and
T15097 46-47 NN denotes B
T15098 48-54 NN denotes allele
T15099 55-64 NN denotes frequency
T15100 64-66 , denotes ,
T15101 66-78 RB denotes respectively
T15102 78-80 , denotes ,
T15103 80-82 IN denotes at
T15104 83-85 DT denotes an
T15106 86-87 SYM denotes ~
T15107 87-90 CD denotes 800
T15109 90-91 HYPH denotes -
T15108 91-93 NN denotes kb
T15105 94-101 NN denotes segment
T15110 102-104 IN denotes on
T15111 105-108 DT denotes the
T15113 109-110 NN denotes p
T15112 111-114 NN denotes arm
T15114 115-117 IN denotes of
T15115 118-128 NN denotes Chromosome
T15116 129-130 CD denotes 3
T15117 130-131 . denotes .
T15118 131-295 sentence denotes Log R ratio is the ratio of normalized, observed R to expected R for each SNP (each SNP is a blue dot) and thus serves as a surrogate of copy number at each locus.
T15119 132-135 NN denotes Log
T15120 136-137 NN denotes R
T15121 138-143 NN denotes ratio
T15122 144-146 VBZ denotes is
T15123 147-150 DT denotes the
T15124 151-156 NN denotes ratio
T15125 157-159 IN denotes of
T15126 160-170 VBN denotes normalized
T15128 170-172 , denotes ,
T15129 172-180 VBN denotes observed
T15127 181-182 NN denotes R
T15130 183-185 IN denotes to
T15131 186-194 VBN denotes expected
T15132 195-196 NN denotes R
T15133 197-200 IN denotes for
T15134 201-205 DT denotes each
T15135 206-209 NN denotes SNP
T15136 210-211 -LRB- denotes (
T15138 211-215 DT denotes each
T15139 216-219 NN denotes SNP
T15137 220-222 VBZ denotes is
T15140 223-224 DT denotes a
T15142 225-229 JJ denotes blue
T15141 230-233 NN denotes dot
T15143 233-234 -RRB- denotes )
T15144 235-238 CC denotes and
T15145 239-243 RB denotes thus
T15146 244-250 VBZ denotes serves
T15147 251-253 IN denotes as
T15148 254-255 DT denotes a
T15149 256-265 NN denotes surrogate
T15150 266-268 IN denotes of
T15151 269-273 NN denotes copy
T15152 274-280 NN denotes number
T15153 281-283 IN denotes at
T15154 284-288 DT denotes each
T15155 289-294 NN denotes locus
T15156 294-295 . denotes .
T15157 295-433 sentence denotes B allele frequency is a measure of the number of times the A or B alleles are detected at each locus (each SNP is denoted by a blue dot).
T15158 296-297 NN denotes B
T15159 298-304 NN denotes allele
T15160 305-314 NN denotes frequency
T15161 315-317 VBZ denotes is
T15162 318-319 DT denotes a
T15163 320-327 NN denotes measure
T15164 328-330 IN denotes of
T15165 331-334 DT denotes the
T15166 335-341 NN denotes number
T15167 342-344 IN denotes of
T15168 345-350 NNS denotes times
T15169 351-354 DT denotes the
T15171 355-356 NN denotes A
T15172 357-359 CC denotes or
T15173 360-361 NN denotes B
T15170 362-369 NNS denotes alleles
T15175 370-373 VBP denotes are
T15174 374-382 VBN denotes detected
T15176 383-385 IN denotes at
T15177 386-390 DT denotes each
T15178 391-396 NN denotes locus
T15179 397-398 -LRB- denotes (
T15181 398-402 DT denotes each
T15182 403-406 NN denotes SNP
T15183 407-409 VBZ denotes is
T15180 410-417 VBN denotes denoted
T15184 418-420 IN denotes by
T15185 421-422 DT denotes a
T15187 423-427 JJ denotes blue
T15186 428-431 NN denotes dot
T15188 431-432 -RRB- denotes )
T15189 432-433 . denotes .
T15190 433-651 sentence denotes Thus, SNPs with a B allele frequency of one are apparent B/B homozygotes, SNPs with a B allele frequency of 0.5 are apparent A/B heterozygotes, and those with a B allele frequency of zero are apparent A/A homozygotes.
T15191 434-438 RB denotes Thus
T15193 438-440 , denotes ,
T15194 440-444 NNS denotes SNPs
T15196 445-449 IN denotes with
T15197 450-451 DT denotes a
T15199 452-453 NN denotes B
T15200 454-460 NN denotes allele
T15198 461-470 NN denotes frequency
T15201 471-473 IN denotes of
T15202 474-477 CD denotes one
T15195 478-481 VBP denotes are
T15203 482-490 JJ denotes apparent
T15205 491-492 NN denotes B
T15207 492-493 HYPH denotes /
T15206 493-494 NN denotes B
T15204 495-506 NNS denotes homozygotes
T15208 506-508 , denotes ,
T15209 508-512 NNS denotes SNPs
T15210 513-517 IN denotes with
T15211 518-519 DT denotes a
T15213 520-521 NN denotes B
T15214 522-528 NN denotes allele
T15212 529-538 NN denotes frequency
T15215 539-541 IN denotes of
T15216 542-545 CD denotes 0.5
T15192 546-549 VBP denotes are
T15217 550-558 JJ denotes apparent
T15219 559-560 NN denotes A
T15221 560-561 HYPH denotes /
T15220 561-562 NN denotes B
T15218 563-576 NNS denotes heterozygotes
T15222 576-578 , denotes ,
T15223 578-581 CC denotes and
T15224 582-587 DT denotes those
T15226 588-592 IN denotes with
T15227 593-594 DT denotes a
T15229 595-596 NN denotes B
T15230 597-603 NN denotes allele
T15228 604-613 NN denotes frequency
T15231 614-616 IN denotes of
T15232 617-621 CD denotes zero
T15225 622-625 VBP denotes are
T15233 626-634 JJ denotes apparent
T15235 635-636 NN denotes A
T15237 636-637 HYPH denotes /
T15236 637-638 NN denotes A
T15234 639-650 NNS denotes homozygotes
T15238 650-651 . denotes .
T15239 651-787 sentence denotes Clearly, these plots show a contiguous region ~200 kb long with decreased copy number and apparent homozygosity (bounded by a red box).
T15240 652-659 RB denotes Clearly
T15242 659-661 , denotes ,
T15243 661-666 DT denotes these
T15244 667-672 NNS denotes plots
T15241 673-677 VBP denotes show
T15245 678-679 DT denotes a
T15247 680-690 JJ denotes contiguous
T15246 691-697 NN denotes region
T15248 698-699 SYM denotes ~
T15249 699-702 CD denotes 200
T15250 703-705 NN denotes kb
T15251 706-710 JJ denotes long
T15252 711-715 IN denotes with
T15253 716-725 VBN denotes decreased
T15255 726-730 NN denotes copy
T15254 731-737 NN denotes number
T15256 738-741 CC denotes and
T15257 742-750 JJ denotes apparent
T15258 751-763 NN denotes homozygosity
T15259 764-765 -LRB- denotes (
T15260 765-772 VBN denotes bounded
T15261 773-775 IN denotes by
T15262 776-777 DT denotes a
T15264 778-781 JJ denotes red
T15263 782-785 NN denotes box
T15265 785-786 -RRB- denotes )
T15266 786-787 . denotes .
T15267 787-883 sentence denotes As we have demonstrated previously, this is indicative of a heterozygous genomic deletion [15].
T15268 788-790 IN denotes As
T15270 791-793 PRP denotes we
T15271 794-798 VBP denotes have
T15269 799-811 VBN denotes demonstrated
T15273 812-822 RB denotes previously
T15274 822-824 , denotes ,
T15275 824-828 DT denotes this
T15272 829-831 VBZ denotes is
T15276 832-842 JJ denotes indicative
T15277 843-845 IN denotes of
T15278 846-847 DT denotes a
T15280 848-860 JJ denotes heterozygous
T15281 861-868 JJ denotes genomic
T15279 869-877 NN denotes deletion
T15282 878-879 -LRB- denotes [
T15283 879-881 CD denotes 15
T15284 881-882 -RRB- denotes ]
T15285 882-883 . denotes .
T15286 883-983 sentence denotes Below these plots is a schematic of the two known genes affected by this deletion, ITPR1 and SUMF1.
T15287 884-889 IN denotes Below
T15289 890-895 DT denotes these
T15290 896-901 NNS denotes plots
T15288 902-904 VBZ denotes is
T15291 905-906 DT denotes a
T15292 907-916 NN denotes schematic
T15293 917-919 IN denotes of
T15294 920-923 DT denotes the
T15296 924-927 CD denotes two
T15297 928-933 VBN denotes known
T15295 934-939 NNS denotes genes
T15298 940-948 VBN denotes affected
T15299 949-951 IN denotes by
T15300 952-956 DT denotes this
T15301 957-965 NN denotes deletion
T15302 965-967 , denotes ,
T15303 967-972 NN denotes ITPR1
T15304 973-976 CC denotes and
T15305 977-982 NN denotes SUMF1
T15306 982-983 . denotes .
R4407 T15087 T15088 det The,plots
R4408 T15088 T15092 nsubj plots,are
R4409 T15089 T15088 amod upper,plots
R4410 T15090 T15089 cc and,upper
R4411 T15091 T15089 conj lower,upper
R4412 T15093 T15094 compound log,R
R4413 T15094 T15095 compound R,ratio
R4414 T15095 T15092 attr ratio,are
R4415 T15096 T15095 cc and,ratio
R4416 T15097 T15098 compound B,allele
R4417 T15098 T15099 compound allele,frequency
R4418 T15099 T15095 conj frequency,ratio
R4419 T15100 T15092 punct ", ",are
R4420 T15101 T15092 advmod respectively,are
R4421 T15102 T15092 punct ", ",are
R4422 T15103 T15092 prep at,are
R4423 T15104 T15105 det an,segment
R4424 T15105 T15103 pobj segment,at
R4425 T15106 T15107 punct ~,800
R4426 T15107 T15108 nummod 800,kb
R4427 T15108 T15105 compound kb,segment
R4428 T15109 T15108 punct -,kb
R4429 T15110 T15105 prep on,segment
R4430 T15111 T15112 det the,arm
R4431 T15112 T15110 pobj arm,on
R4432 T15113 T15112 compound p,arm
R4433 T15114 T15112 prep of,arm
R4434 T15115 T15114 pobj Chromosome,of
R4435 T15116 T15115 nummod 3,Chromosome
R4436 T15117 T15092 punct .,are
R4437 T15119 T15120 compound Log,R
R4438 T15120 T15121 compound R,ratio
R4439 T15121 T15122 nsubj ratio,is
R4440 T15123 T15124 det the,ratio
R4441 T15124 T15122 attr ratio,is
R4442 T15125 T15124 prep of,ratio
R4443 T15126 T15127 amod normalized,R
R4444 T15127 T15125 pobj R,of
R4445 T15128 T15127 punct ", ",R
R4446 T15129 T15127 amod observed,R
R4447 T15130 T15124 prep to,ratio
R4448 T15131 T15132 amod expected,R
R4449 T15132 T15130 pobj R,to
R4450 T15133 T15124 prep for,ratio
R4451 T15134 T15135 det each,SNP
R4452 T15135 T15133 pobj SNP,for
R4453 T15136 T15137 punct (,is
R4454 T15137 T15124 parataxis is,ratio
R4455 T15138 T15139 det each,SNP
R4456 T15139 T15137 nsubj SNP,is
R4457 T15140 T15141 det a,dot
R4458 T15141 T15137 attr dot,is
R4459 T15142 T15141 amod blue,dot
R4460 T15143 T15137 punct ),is
R4461 T15144 T15122 cc and,is
R4462 T15145 T15146 advmod thus,serves
R4463 T15146 T15122 conj serves,is
R4464 T15147 T15146 prep as,serves
R4465 T15148 T15149 det a,surrogate
R4466 T15149 T15147 pobj surrogate,as
R4467 T15150 T15149 prep of,surrogate
R4468 T15151 T15152 compound copy,number
R4469 T15152 T15150 pobj number,of
R4470 T15153 T15146 prep at,serves
R4471 T15154 T15155 det each,locus
R4472 T15155 T15153 pobj locus,at
R4473 T15156 T15122 punct .,is
R4474 T15158 T15159 compound B,allele
R4475 T15159 T15160 compound allele,frequency
R4476 T15160 T15161 nsubj frequency,is
R4477 T15162 T15163 det a,measure
R4478 T15163 T15161 attr measure,is
R4479 T15164 T15163 prep of,measure
R4480 T15165 T15166 det the,number
R4481 T15166 T15164 pobj number,of
R4482 T15167 T15166 prep of,number
R4483 T15168 T15167 pobj times,of
R4484 T15169 T15170 det the,alleles
R4485 T15170 T15174 nsubjpass alleles,detected
R4486 T15171 T15170 nmod A,alleles
R4487 T15172 T15171 cc or,A
R4488 T15173 T15171 conj B,A
R4489 T15174 T15168 advcl detected,times
R4490 T15175 T15174 auxpass are,detected
R4491 T15176 T15174 prep at,detected
R4492 T15177 T15178 det each,locus
R4493 T15178 T15176 pobj locus,at
R4494 T15179 T15180 punct (,denoted
R4495 T15180 T15161 parataxis denoted,is
R4496 T15181 T15182 det each,SNP
R4497 T15182 T15180 nsubjpass SNP,denoted
R4498 T15183 T15180 auxpass is,denoted
R4499 T15184 T15180 agent by,denoted
R4500 T15185 T15186 det a,dot
R4501 T15186 T15184 pobj dot,by
R4502 T15187 T15186 amod blue,dot
R4503 T15188 T15180 punct ),denoted
R4504 T15189 T15161 punct .,is
R4505 T15191 T15192 advmod Thus,are
R4506 T15193 T15192 punct ", ",are
R4507 T15194 T15195 nsubj SNPs,are
R4508 T15195 T15192 ccomp are,are
R4509 T15196 T15194 prep with,SNPs
R4510 T15197 T15198 det a,frequency
R4511 T15198 T15196 pobj frequency,with
R4512 T15199 T15200 compound B,allele
R4513 T15200 T15198 compound allele,frequency
R4514 T15201 T15198 prep of,frequency
R4515 T15202 T15201 pobj one,of
R4516 T15203 T15204 amod apparent,homozygotes
R4517 T15204 T15195 attr homozygotes,are
R4518 T15205 T15206 compound B,B
R4519 T15206 T15204 compound B,homozygotes
R4520 T15207 T15206 punct /,B
R4521 T15208 T15192 punct ", ",are
R4522 T15209 T15192 nsubj SNPs,are
R4523 T15210 T15209 prep with,SNPs
R4524 T15211 T15212 det a,frequency
R4525 T15212 T15210 pobj frequency,with
R4526 T15213 T15214 compound B,allele
R4527 T15214 T15212 compound allele,frequency
R4528 T15215 T15212 prep of,frequency
R4529 T15216 T15215 pobj 0.5,of
R4530 T15217 T15218 amod apparent,heterozygotes
R4531 T15218 T15192 attr heterozygotes,are
R4532 T15219 T15220 compound A,B
R4533 T15220 T15218 compound B,heterozygotes
R4534 T15221 T15220 punct /,B
R4535 T15222 T15192 punct ", ",are
R4536 T15223 T15192 cc and,are
R4537 T15224 T15225 nsubj those,are
R4538 T15225 T15192 conj are,are
R4539 T15226 T15224 prep with,those
R4540 T15227 T15228 det a,frequency
R4541 T15228 T15226 pobj frequency,with
R4542 T15229 T15230 compound B,allele
R4543 T15230 T15228 compound allele,frequency
R4544 T15231 T15228 prep of,frequency
R4545 T15232 T15231 pobj zero,of
R4546 T15233 T15234 amod apparent,homozygotes
R4547 T15234 T15225 attr homozygotes,are
R4548 T15235 T15236 compound A,A
R4549 T15236 T15234 compound A,homozygotes
R4550 T15237 T15236 punct /,A
R4551 T15238 T15225 punct .,are
R4552 T15240 T15241 advmod Clearly,show
R4553 T15242 T15241 punct ", ",show
R4554 T15243 T15244 det these,plots
R4555 T15244 T15241 nsubj plots,show
R4556 T15245 T15246 det a,region
R4557 T15246 T15241 dobj region,show
R4558 T15247 T15246 amod contiguous,region
R4559 T15248 T15249 punct ~,200
R4560 T15249 T15250 nummod 200,kb
R4561 T15250 T15251 npadvmod kb,long
R4562 T15251 T15246 amod long,region
R4563 T15252 T15246 prep with,region
R4564 T15253 T15254 amod decreased,number
R4565 T15254 T15252 pobj number,with
R4566 T15255 T15254 compound copy,number
R4567 T15256 T15254 cc and,number
R4568 T15257 T15258 amod apparent,homozygosity
R4569 T15258 T15254 conj homozygosity,number
R4570 T15259 T15246 punct (,region
R4571 T15260 T15246 acl bounded,region
R4572 T15261 T15260 agent by,bounded
R4573 T15262 T15263 det a,box
R4574 T15263 T15261 pobj box,by
R4575 T15264 T15263 amod red,box
R4576 T15265 T15241 punct ),show
R4577 T15266 T15241 punct .,show
R4578 T15268 T15269 mark As,demonstrated
R4579 T15269 T15272 advcl demonstrated,is
R4580 T15270 T15269 nsubj we,demonstrated
R4581 T15271 T15269 aux have,demonstrated
R4582 T15273 T15269 advmod previously,demonstrated
R4583 T15274 T15272 punct ", ",is
R4584 T15275 T15272 nsubj this,is
R4585 T15276 T15272 acomp indicative,is
R4586 T15277 T15276 prep of,indicative
R4587 T15278 T15279 det a,deletion
R4588 T15279 T15277 pobj deletion,of
R4589 T15280 T15279 amod heterozygous,deletion
R4590 T15281 T15279 amod genomic,deletion
R4591 T15282 T15283 punct [,15
R4592 T15283 T15272 parataxis 15,is
R4593 T15284 T15283 punct ],15
R4594 T15285 T15272 punct .,is
R4595 T15287 T15288 prep Below,is
R4596 T15289 T15290 det these,plots
R4597 T15290 T15287 pobj plots,Below
R4598 T15291 T15292 det a,schematic
R4599 T15292 T15288 nsubj schematic,is
R4600 T15293 T15292 prep of,schematic
R4601 T15294 T15295 det the,genes
R4602 T15295 T15293 pobj genes,of
R4603 T15296 T15295 nummod two,genes
R4604 T15297 T15295 amod known,genes
R4605 T15298 T15295 acl affected,genes
R4606 T15299 T15298 agent by,affected
R4607 T15300 T15301 det this,deletion
R4608 T15301 T15299 pobj deletion,by
R4609 T15302 T15295 punct ", ",genes
R4610 T15303 T15295 appos ITPR1,genes
R4611 T15304 T15303 cc and,ITPR1
R4612 T15305 T15303 conj SUMF1,ITPR1
R4613 T15306 T15288 punct .,is