PMC:116589 / 18549-19659 JSONTXT 6 Projects

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Id Subject Object Predicate Lexical cue
T3230 0-5 NNS denotes cDNAs
T3232 6-14 VBG denotes encoding
T3233 15-19 NN denotes ECFP
T3234 19-21 , denotes ,
T3235 21-25 NN denotes EYFP
T3236 26-29 CC denotes and
T3237 30-35 VBN denotes DsRed
T3238 36-40 VBD denotes were
T3239 41-50 VBN denotes amplified
T3240 51-55 IN denotes from
T3241 56-64 NNS denotes plasmids
T3242 65-70 NN denotes pECFP
T3243 70-72 , denotes ,
T3244 72-77 NN denotes pEYFP
T3245 78-81 CC denotes and
T3246 82-89 NN denotes pDsRed1
T3248 89-90 HYPH denotes -
T3247 90-92 NN denotes N1
T3249 93-94 -LRB- denotes (
T3251 94-102 NNP denotes Clontech
T3252 102-104 , denotes ,
T3250 104-108 NNP denotes Inc.
T3253 108-109 -RRB- denotes )
T3254 110-112 IN denotes by
T3255 113-116 NN denotes PCR
T3231 117-122 VBG denotes using
T3256 123-127 NNP denotes HiFi
T3258 128-131 NNP denotes Taq
T3257 132-142 NN denotes Polymerase
T3259 143-144 -LRB- denotes (
T3260 144-154 NN denotes Invitrogen
T3261 154-155 -RRB- denotes )
T3262 155-156 . denotes .
T3263 156-416 sentence denotes For ECFP and EYFP primers used were GFP-L (5'-TTG AAT TCG CCA CCA TGG TGA GC) and GFP-R (5'-TTG AAT TCT TAC TTG TAC AGC TCG TCC), for dsRed primers were red-L (5'-TTG AAT TCG CCA CCA TGG TGC GCT C) and red-R (5'-TTG AAT TCT TAC GCT ACA GCT ACA GGA ACA GGT G).
T3264 157-160 IN denotes For
T3266 161-165 NN denotes ECFP
T3267 166-169 CC denotes and
T3268 170-174 NN denotes EYFP
T3269 175-182 NNS denotes primers
T3270 183-187 VBN denotes used
T3265 188-192 VBD denotes were
T3272 193-196 NN denotes GFP
T3274 196-197 HYPH denotes -
T3273 197-198 NN denotes L
T3275 199-200 -LRB- denotes (
T3276 200-201 CD denotes 5
T3278 201-202 SYM denotes '
T3279 202-203 HYPH denotes -
T3280 203-206 NN denotes TTG
T3281 207-210 NN denotes AAT
T3282 211-214 NN denotes TCG
T3283 215-218 NN denotes CCA
T3284 219-222 NN denotes CCA
T3285 223-226 NN denotes TGG
T3286 227-230 NN denotes TGA
T3277 231-233 NN denotes GC
T3287 233-234 -RRB- denotes )
T3288 235-238 CC denotes and
T3289 239-242 NN denotes GFP
T3291 242-243 HYPH denotes -
T3290 243-244 NN denotes R
T3292 245-246 -LRB- denotes (
T3294 246-247 NN denotes 5
T3295 247-248 SYM denotes '
T3296 248-249 HYPH denotes -
T3297 249-252 NN denotes TTG
T3298 253-256 NN denotes AAT
T3299 257-260 NN denotes TCT
T3300 261-264 NN denotes TAC
T3301 265-268 NN denotes TTG
T3302 269-272 NN denotes TAC
T3303 273-276 NN denotes AGC
T3304 277-280 NN denotes TCG
T3293 281-284 NN denotes TCC
T3305 284-285 -RRB- denotes )
T3306 285-287 , denotes ,
T3307 287-290 IN denotes for
T3308 291-296 JJ denotes dsRed
T3309 297-304 NNS denotes primers
T3271 305-309 VBD denotes were
T3310 310-313 NN denotes red
T3312 313-314 HYPH denotes -
T3311 314-315 NN denotes L
T3313 316-317 -LRB- denotes (
T3314 317-318 CD denotes 5
T3316 318-319 SYM denotes '
T3317 319-320 HYPH denotes -
T3318 320-323 NN denotes TTG
T3319 324-327 NN denotes AAT
T3320 328-331 NN denotes TCG
T3321 332-335 NN denotes CCA
T3322 336-339 NN denotes CCA
T3323 340-343 NN denotes TGG
T3324 344-347 NN denotes TGC
T3325 348-351 NN denotes GCT
T3315 352-353 NN denotes C
T3326 353-354 -RRB- denotes )
T3327 355-358 CC denotes and
T3328 359-362 NN denotes red
T3330 362-363 HYPH denotes -
T3329 363-364 NN denotes R
T3331 365-366 -LRB- denotes (
T3332 366-367 CD denotes 5
T3334 367-368 SYM denotes '
T3335 368-369 HYPH denotes -
T3336 369-372 NN denotes TTG
T3337 373-376 NN denotes AAT
T3338 377-380 NN denotes TCT
T3339 381-384 NN denotes TAC
T3340 385-388 NN denotes GCT
T3341 389-392 NN denotes ACA
T3342 393-396 NN denotes GCT
T3343 397-400 NN denotes ACA
T3344 401-404 NN denotes GGA
T3345 405-408 NN denotes ACA
T3346 409-412 NN denotes GGT
T3333 413-414 NN denotes G
T3347 414-415 -RRB- denotes )
T3348 415-416 . denotes .
T3349 416-568 sentence denotes All 5' primers contain a Kozak consensus translation initiation site upstream of the ATG for increased translation efficiency in eukaryotic cells [17].
T3350 417-420 DT denotes All
T3352 421-422 CD denotes 5
T3353 422-423 SYM denotes '
T3351 424-431 NNS denotes primers
T3354 432-439 VBP denotes contain
T3355 440-441 DT denotes a
T3357 442-447 NNP denotes Kozak
T3358 448-457 NN denotes consensus
T3359 458-469 NN denotes translation
T3360 470-480 NN denotes initiation
T3356 481-485 NN denotes site
T3361 486-494 JJ denotes upstream
T3362 495-497 IN denotes of
T3363 498-501 DT denotes the
T3364 502-505 NN denotes ATG
T3365 506-509 IN denotes for
T3366 510-519 VBN denotes increased
T3368 520-531 NN denotes translation
T3367 532-542 NN denotes efficiency
T3369 543-545 IN denotes in
T3370 546-556 JJ denotes eukaryotic
T3371 557-562 NNS denotes cells
T3372 563-564 -LRB- denotes [
T3373 564-566 CD denotes 17
T3374 566-567 -RRB- denotes ]
T3375 567-568 . denotes .
T3376 568-795 sentence denotes To construct vectors driving ubiquitous transgene expression in ES cells and mice, the PCR amplified cDNAs were digested with EcoRI and inserted into the EcoRI sites of pCAGGS [18] to generate pCX-ECFP, pCX-EYFP and pCX-DsRed.
T3377 569-571 TO denotes To
T3378 572-581 VB denotes construct
T3380 582-589 NNS denotes vectors
T3381 590-597 VBG denotes driving
T3382 598-608 JJ denotes ubiquitous
T3384 609-618 NN denotes transgene
T3383 619-629 NN denotes expression
T3385 630-632 IN denotes in
T3386 633-635 NN denotes ES
T3387 636-641 NNS denotes cells
T3388 642-645 CC denotes and
T3389 646-650 NNS denotes mice
T3390 650-652 , denotes ,
T3391 652-655 DT denotes the
T3393 656-659 NN denotes PCR
T3394 660-669 VBN denotes amplified
T3392 670-675 NNS denotes cDNAs
T3395 676-680 VBD denotes were
T3379 681-689 VBN denotes digested
T3396 690-694 IN denotes with
T3397 695-700 NN denotes EcoRI
T3398 701-704 CC denotes and
T3399 705-713 VBD denotes inserted
T3400 714-718 IN denotes into
T3401 719-722 DT denotes the
T3403 723-728 NN denotes EcoRI
T3402 729-734 NNS denotes sites
T3404 735-737 IN denotes of
T3405 738-744 NN denotes pCAGGS
T3406 745-746 -LRB- denotes [
T3407 746-748 CD denotes 18
T3408 748-749 -RRB- denotes ]
T3409 750-752 TO denotes to
T3410 753-761 VB denotes generate
T3411 762-765 NN denotes pCX
T3413 765-766 HYPH denotes -
T3412 766-770 NN denotes ECFP
T3414 770-772 , denotes ,
T3415 772-775 NN denotes pCX
T3417 775-776 HYPH denotes -
T3416 776-780 NN denotes EYFP
T3418 781-784 CC denotes and
T3419 785-788 NN denotes pCX
T3421 788-789 HYPH denotes -
T3420 789-794 NN denotes DsRed
T3422 794-795 . denotes .
T3423 795-952 sentence denotes pCAGGS contains the chicken beta-actin promoter and first intron coupled to the CMV immediate early enhancer, and rabbit beta-globin polyadenylation signal.
T3424 796-802 NN denotes pCAGGS
T3425 803-811 VBZ denotes contains
T3426 812-815 DT denotes the
T3428 816-823 NN denotes chicken
T3429 824-828 NN denotes beta
T3431 828-829 HYPH denotes -
T3430 829-834 NN denotes actin
T3427 835-843 NN denotes promoter
T3432 844-847 CC denotes and
T3433 848-853 JJ denotes first
T3434 854-860 NN denotes intron
T3435 861-868 VBN denotes coupled
T3436 869-871 IN denotes to
T3437 872-875 DT denotes the
T3439 876-879 NN denotes CMV
T3440 880-889 JJ denotes immediate
T3441 890-895 JJ denotes early
T3438 896-904 NN denotes enhancer
T3442 904-906 , denotes ,
T3443 906-909 CC denotes and
T3444 910-916 NN denotes rabbit
T3446 917-921 NN denotes beta
T3448 921-922 HYPH denotes -
T3447 922-928 NN denotes globin
T3449 929-944 NN denotes polyadenylation
T3445 945-951 NN denotes signal
T3450 951-952 . denotes .
T3451 952-1110 sentence denotes This promoter/enhancer combination has previously been shown to drive strong and widespread transgene expression in ES cells, embryos and adult mice [18,19].
T3452 953-957 DT denotes This
T3454 958-966 NN denotes promoter
T3456 966-967 HYPH denotes /
T3455 967-975 NN denotes enhancer
T3453 976-987 NN denotes combination
T3458 988-991 VBZ denotes has
T3459 992-1002 RB denotes previously
T3460 1003-1007 VBN denotes been
T3457 1008-1013 VBN denotes shown
T3461 1014-1016 TO denotes to
T3462 1017-1022 VB denotes drive
T3463 1023-1029 JJ denotes strong
T3465 1030-1033 CC denotes and
T3466 1034-1044 JJ denotes widespread
T3467 1045-1054 NN denotes transgene
T3464 1055-1065 NN denotes expression
T3468 1066-1068 IN denotes in
T3469 1069-1071 NN denotes ES
T3470 1072-1077 NNS denotes cells
T3471 1077-1079 , denotes ,
T3472 1079-1086 NNS denotes embryos
T3473 1087-1090 CC denotes and
T3474 1091-1096 JJ denotes adult
T3475 1097-1101 NNS denotes mice
T3476 1102-1103 -LRB- denotes [
T3478 1103-1105 CD denotes 18
T3479 1105-1106 , denotes ,
T3477 1106-1108 CD denotes 19
T3480 1108-1109 -RRB- denotes ]
T3481 1109-1110 . denotes .
R2189 T3230 T3231 nsubjpass cDNAs,using
R2190 T3232 T3230 acl encoding,cDNAs
R2191 T3233 T3232 dobj ECFP,encoding
R2192 T3234 T3233 punct ", ",ECFP
R2193 T3235 T3233 conj EYFP,ECFP
R2194 T3236 T3235 cc and,EYFP
R2195 T3237 T3235 conj DsRed,EYFP
R2196 T3238 T3231 auxpass were,using
R2197 T3239 T3231 aux amplified,using
R2198 T3240 T3231 prep from,using
R2199 T3241 T3242 compound plasmids,pECFP
R2200 T3242 T3240 pobj pECFP,from
R2201 T3243 T3242 punct ", ",pECFP
R2202 T3244 T3242 conj pEYFP,pECFP
R2203 T3245 T3244 cc and,pEYFP
R2204 T3246 T3247 compound pDsRed1,N1
R2205 T3247 T3244 conj N1,pEYFP
R2206 T3248 T3247 punct -,N1
R2207 T3249 T3250 punct (,Inc.
R2208 T3250 T3242 parataxis Inc.,pECFP
R2209 T3251 T3250 nmod Clontech,Inc.
R2210 T3252 T3250 punct ", ",Inc.
R2211 T3253 T3250 punct ),Inc.
R2212 T3254 T3231 prep by,using
R2213 T3255 T3254 pobj PCR,by
R2214 T3256 T3257 compound HiFi,Polymerase
R2215 T3257 T3231 dobj Polymerase,using
R2216 T3258 T3257 compound Taq,Polymerase
R2217 T3259 T3260 punct (,Invitrogen
R2218 T3260 T3257 parataxis Invitrogen,Polymerase
R2219 T3261 T3260 punct ),Invitrogen
R2220 T3262 T3231 punct .,using
R2221 T3264 T3265 prep For,were
R2222 T3265 T3271 ccomp were,were
R2223 T3266 T3264 pobj ECFP,For
R2224 T3267 T3266 cc and,ECFP
R2225 T3268 T3266 conj EYFP,ECFP
R2226 T3269 T3265 nsubj primers,were
R2227 T3270 T3269 acl used,primers
R2228 T3272 T3273 compound GFP,L
R2229 T3273 T3265 attr L,were
R2230 T3274 T3273 punct -,L
R2231 T3275 T3273 punct (,L
R2232 T3276 T3277 nummod 5,GC
R2233 T3277 T3273 appos GC,L
R2234 T3278 T3276 punct ',5
R2235 T3279 T3277 punct -,GC
R2236 T3280 T3277 compound TTG,GC
R2237 T3281 T3277 compound AAT,GC
R2238 T3282 T3277 compound TCG,GC
R2239 T3283 T3277 compound CCA,GC
R2240 T3284 T3277 compound CCA,GC
R2241 T3285 T3277 compound TGG,GC
R2242 T3286 T3277 compound TGA,GC
R2243 T3287 T3273 punct ),L
R2244 T3288 T3273 cc and,L
R2245 T3289 T3290 compound GFP,R
R2246 T3290 T3273 conj R,L
R2247 T3291 T3290 punct -,R
R2248 T3292 T3293 punct (,TCC
R2249 T3293 T3290 appos TCC,R
R2250 T3294 T3293 nmod 5,TCC
R2251 T3295 T3294 punct ',5
R2252 T3296 T3293 punct -,TCC
R2253 T3297 T3293 compound TTG,TCC
R2254 T3298 T3293 compound AAT,TCC
R2255 T3299 T3293 compound TCT,TCC
R2256 T3300 T3293 compound TAC,TCC
R2257 T3301 T3293 compound TTG,TCC
R2258 T3302 T3293 compound TAC,TCC
R2259 T3303 T3293 compound AGC,TCC
R2260 T3304 T3293 compound TCG,TCC
R2261 T3305 T3271 punct ),were
R2262 T3306 T3271 punct ", ",were
R2263 T3307 T3271 prep for,were
R2264 T3308 T3307 pobj dsRed,for
R2265 T3309 T3271 nsubj primers,were
R2266 T3310 T3311 compound red,L
R2267 T3311 T3271 attr L,were
R2268 T3312 T3311 punct -,L
R2269 T3313 T3311 punct (,L
R2270 T3314 T3315 nummod 5,C
R2271 T3315 T3311 appos C,L
R2272 T3316 T3314 punct ',5
R2273 T3317 T3315 punct -,C
R2274 T3318 T3315 compound TTG,C
R2275 T3319 T3315 compound AAT,C
R2276 T3320 T3315 compound TCG,C
R2277 T3321 T3315 compound CCA,C
R2278 T3322 T3315 compound CCA,C
R2279 T3323 T3315 compound TGG,C
R2280 T3324 T3315 compound TGC,C
R2281 T3325 T3315 compound GCT,C
R2282 T3326 T3311 punct ),L
R2283 T3327 T3311 cc and,L
R2284 T3328 T3329 compound red,R
R2285 T3329 T3311 conj R,L
R2286 T3330 T3329 punct -,R
R2287 T3331 T3329 punct (,R
R2288 T3332 T3333 nummod 5,G
R2289 T3333 T3329 appos G,R
R2290 T3334 T3332 punct ',5
R2291 T3335 T3333 punct -,G
R2292 T3336 T3333 compound TTG,G
R2293 T3337 T3333 compound AAT,G
R2294 T3338 T3333 compound TCT,G
R2295 T3339 T3333 compound TAC,G
R2296 T3340 T3333 compound GCT,G
R2297 T3341 T3333 compound ACA,G
R2298 T3342 T3333 compound GCT,G
R2299 T3343 T3333 compound ACA,G
R2300 T3344 T3333 compound GGA,G
R2301 T3345 T3333 compound ACA,G
R2302 T3346 T3333 compound GGT,G
R2303 T3347 T3271 punct ),were
R2304 T3348 T3271 punct .,were
R2305 T3350 T3351 det All,primers
R2306 T3351 T3354 nsubj primers,contain
R2307 T3352 T3351 nummod 5,primers
R2308 T3353 T3352 punct ',5
R2309 T3355 T3356 det a,site
R2310 T3356 T3354 dobj site,contain
R2311 T3357 T3358 compound Kozak,consensus
R2312 T3358 T3356 compound consensus,site
R2313 T3359 T3360 compound translation,initiation
R2314 T3360 T3356 compound initiation,site
R2315 T3361 T3356 amod upstream,site
R2316 T3362 T3361 prep of,upstream
R2317 T3363 T3364 det the,ATG
R2318 T3364 T3362 pobj ATG,of
R2319 T3365 T3354 prep for,contain
R2320 T3366 T3367 amod increased,efficiency
R2321 T3367 T3365 pobj efficiency,for
R2322 T3368 T3367 compound translation,efficiency
R2323 T3369 T3367 prep in,efficiency
R2324 T3370 T3371 amod eukaryotic,cells
R2325 T3371 T3369 pobj cells,in
R2326 T3372 T3373 punct [,17
R2327 T3373 T3354 parataxis 17,contain
R2328 T3374 T3373 punct ],17
R2329 T3375 T3354 punct .,contain
R2330 T3377 T3378 aux To,construct
R2331 T3378 T3379 advcl construct,digested
R2332 T3380 T3378 dobj vectors,construct
R2333 T3381 T3380 acl driving,vectors
R2334 T3382 T3383 amod ubiquitous,expression
R2335 T3383 T3381 dobj expression,driving
R2336 T3384 T3383 compound transgene,expression
R2337 T3385 T3381 prep in,driving
R2338 T3386 T3387 compound ES,cells
R2339 T3387 T3385 pobj cells,in
R2340 T3388 T3387 cc and,cells
R2341 T3389 T3387 conj mice,cells
R2342 T3390 T3379 punct ", ",digested
R2343 T3391 T3392 det the,cDNAs
R2344 T3392 T3379 nsubjpass cDNAs,digested
R2345 T3393 T3394 npadvmod PCR,amplified
R2346 T3394 T3392 amod amplified,cDNAs
R2347 T3395 T3379 auxpass were,digested
R2348 T3396 T3379 prep with,digested
R2349 T3397 T3396 pobj EcoRI,with
R2350 T3398 T3379 cc and,digested
R2351 T3399 T3379 conj inserted,digested
R2352 T3400 T3399 prep into,inserted
R2353 T3401 T3402 det the,sites
R2354 T3402 T3400 pobj sites,into
R2355 T3403 T3402 compound EcoRI,sites
R2356 T3404 T3402 prep of,sites
R2357 T3405 T3404 pobj pCAGGS,of
R2358 T3406 T3407 punct [,18
R2359 T3407 T3399 parataxis 18,inserted
R2360 T3408 T3407 punct ],18
R2361 T3409 T3410 aux to,generate
R2362 T3410 T3399 advcl generate,inserted
R2363 T3411 T3412 compound pCX,ECFP
R2364 T3412 T3410 dobj ECFP,generate
R2365 T3413 T3412 punct -,ECFP
R2366 T3414 T3412 punct ", ",ECFP
R2367 T3415 T3416 compound pCX,EYFP
R2368 T3416 T3412 conj EYFP,ECFP
R2369 T3417 T3416 punct -,EYFP
R2370 T3418 T3416 cc and,EYFP
R2371 T3419 T3420 compound pCX,DsRed
R2372 T3420 T3416 conj DsRed,EYFP
R2373 T3421 T3420 punct -,DsRed
R2374 T3422 T3379 punct .,digested
R2375 T3424 T3425 nsubj pCAGGS,contains
R2376 T3426 T3427 det the,promoter
R2377 T3427 T3425 dobj promoter,contains
R2378 T3428 T3427 compound chicken,promoter
R2379 T3429 T3430 compound beta,actin
R2380 T3430 T3427 compound actin,promoter
R2381 T3431 T3430 punct -,actin
R2382 T3432 T3427 cc and,promoter
R2383 T3433 T3434 amod first,intron
R2384 T3434 T3427 conj intron,promoter
R2385 T3435 T3427 acl coupled,promoter
R2386 T3436 T3435 prep to,coupled
R2387 T3437 T3438 det the,enhancer
R2388 T3438 T3436 pobj enhancer,to
R2389 T3439 T3438 nmod CMV,enhancer
R2390 T3440 T3438 amod immediate,enhancer
R2391 T3441 T3438 amod early,enhancer
R2392 T3442 T3427 punct ", ",promoter
R2393 T3443 T3427 cc and,promoter
R2394 T3444 T3445 compound rabbit,signal
R2395 T3445 T3427 conj signal,promoter
R2396 T3446 T3447 compound beta,globin
R2397 T3447 T3445 compound globin,signal
R2398 T3448 T3447 punct -,globin
R2399 T3449 T3445 compound polyadenylation,signal
R2400 T3450 T3425 punct .,contains
R2401 T3452 T3453 det This,combination
R2402 T3453 T3457 nsubjpass combination,shown
R2403 T3454 T3455 compound promoter,enhancer
R2404 T3455 T3453 compound enhancer,combination
R2405 T3456 T3455 punct /,enhancer
R2406 T3458 T3457 aux has,shown
R2407 T3459 T3457 advmod previously,shown
R2408 T3460 T3457 auxpass been,shown
R2409 T3461 T3462 aux to,drive
R2410 T3462 T3457 xcomp drive,shown
R2411 T3463 T3464 amod strong,expression
R2412 T3464 T3462 dobj expression,drive
R2413 T3465 T3463 cc and,strong
R2414 T3466 T3463 conj widespread,strong
R2415 T3467 T3464 compound transgene,expression
R2416 T3468 T3462 prep in,drive
R2417 T3469 T3470 compound ES,cells
R2418 T3470 T3468 pobj cells,in
R2419 T3471 T3470 punct ", ",cells
R2420 T3472 T3470 conj embryos,cells
R2421 T3473 T3472 cc and,embryos
R2422 T3474 T3475 amod adult,mice
R2423 T3475 T3472 conj mice,embryos
R2424 T3476 T3477 punct [,19
R2425 T3477 T3457 parataxis 19,shown
R2426 T3478 T3477 nummod 18,19
R2427 T3479 T3477 punct ",",19
R2428 T3480 T3477 punct ],19
R2429 T3481 T3457 punct .,shown