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PubMed:22560631 JSONTXT

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GlyCosmos6-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 31-38 Body_part denotes surface http://purl.obolibrary.org/obo/UBERON_0002416
T2 81-85 Body_part denotes cell http://purl.obolibrary.org/obo/CL_0000000
T3 163-170 Body_part denotes surface http://purl.obolibrary.org/obo/UBERON_0002416
T4 305-312 Body_part denotes surface http://purl.obolibrary.org/obo/UBERON_0002416
T5 513-520 Body_part denotes surface http://purl.obolibrary.org/obo/UBERON_0002416
T6 1643-1650 Body_part denotes surface http://purl.obolibrary.org/obo/UBERON_0002416

GlyCosmos6-CLO

Id Subject Object Predicate Lexical cue
T1 81-85 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T2 983-988 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T3 1147-1150 http://purl.obolibrary.org/obo/CLO_0008339 denotes P-6
T4 1308-1311 http://purl.obolibrary.org/obo/CLO_0008339 denotes P-6

NCBITAXON

Id Subject Object Predicate Lexical cue db_id
T1 52-73 OrganismTaxon denotes Clostridium difficile NCBItxid:1496
T2 240-261 OrganismTaxon denotes Clostridium difficile NCBItxid:1496
T3 1682-1690 OrganismTaxon denotes bacteria NCBItxid:2
T4 1740-1761 OrganismTaxon denotes Clostridium difficile NCBItxid:1496

Allie

Id Subject Object Predicate Lexical cue
SS1_22560631_1_0 86-122 expanded denotes high-resolution magic angle spinning
SS2_22560631_1_0 124-130 abbr denotes HR-MAS
SS1_22560631_4_0 926-943 expanded denotes lipoteichoic acid
SS2_22560631_4_0 945-948 abbr denotes LTA
SS1_22560631_7_0 1524-1532 expanded denotes glycerol
SS2_22560631_7_0 1534-1537 abbr denotes Gro
AE1_22560631_1_0 SS1_22560631_1_0 SS2_22560631_1_0 abbreviatedTo high-resolution magic angle spinning,HR-MAS
AE1_22560631_4_0 SS1_22560631_4_0 SS2_22560631_4_0 abbreviatedTo lipoteichoic acid,LTA
AE1_22560631_7_0 SS1_22560631_7_0 SS2_22560631_7_0 abbreviatedTo glycerol,Gro

NGLY1-deficiency

Id Subject Object Predicate Lexical cue
PD-NGLY1-deficiency-B_T1 1289-1295 chem:24139 denotes GlcNAc

sentences

Id Subject Object Predicate Lexical cue
TextSentencer_T1 0-74 Sentence denotes Structural characterization of surface glycans from Clostridium difficile.
TextSentencer_T2 75-262 Sentence denotes Whole-cell high-resolution magic angle spinning (HR-MAS) NMR was employed to survey the surface polysaccharides of a group of clinical and environmental isolates of Clostridium difficile.
TextSentencer_T3 263-362 Sentence denotes Results indicated that a highly conserved surface polysaccharide profile among all strains studied.
TextSentencer_T4 363-468 Sentence denotes Multiple additional peaks in the anomeric region were also observed which prompted further investigation.
TextSentencer_T5 469-838 Sentence denotes Structural characterization of the isolated surface polysaccharides from two strains confirmed the presence of the conserved water soluble polysaccharide originally described by Ganeshapillai et al. which was composed of a hexaglycosyl phosphate repeat consisting of [→6)-β-D-Glcp-(1-3)-β-D-GalpNAc-(1-4)-α-D-Glcp-(1-4)-[β-D-Glcp(1-3]-β-D-GalpNAc-(1-3)-α-D-Manp-(1-P→].
TextSentencer_T6 839-1003 Sentence denotes In addition, analysis of phenol soluble polysaccharides revealed a similarly conserved lipoteichoic acid (LTA) which could be detected on whole cells by HR-MAS NMR.
TextSentencer_T7 1004-1206 Sentence denotes Conventional NMR and mass spectrometry analysis indicated that the structure of this LTA consisted of the repeat unit [→6)-α-D-GlcpNAc-(1-3)-[→P-6]-α-D-GlcpNAc-(1-2)-D-GroA] where GroA is glyceric acid.
TextSentencer_T8 1207-1313 Sentence denotes The repeating units were linked by a phosphodiester bridge between C-6 of the two GlcNAc residues (6-P-6).
TextSentencer_T9 1314-1401 Sentence denotes A minor component consisted of GlcpN-(1-3) instead of GlcpNAc-(1-3) in the repeat unit.
TextSentencer_T10 1402-1566 Sentence denotes Through a 6-6 phosphodiester bridge this polymer was linked to →6)-β-D-Glcp-(1-6)-β-D-Glcp-(1-6)-β-D-Glcp-(1-1)-Gro, with glycerol (Gro) substituted by fatty acids.
TextSentencer_T11 1567-1762 Sentence denotes This is the first report of the utility of HR-MAS NMR in the examination of surface carbohydrates of Gram positive bacteria and identification of a novel LTA structure from Clostridium difficile.
T1 0-74 Sentence denotes Structural characterization of surface glycans from Clostridium difficile.
T2 75-262 Sentence denotes Whole-cell high-resolution magic angle spinning (HR-MAS) NMR was employed to survey the surface polysaccharides of a group of clinical and environmental isolates of Clostridium difficile.
T3 263-362 Sentence denotes Results indicated that a highly conserved surface polysaccharide profile among all strains studied.
T4 363-468 Sentence denotes Multiple additional peaks in the anomeric region were also observed which prompted further investigation.
T5 469-838 Sentence denotes Structural characterization of the isolated surface polysaccharides from two strains confirmed the presence of the conserved water soluble polysaccharide originally described by Ganeshapillai et al. which was composed of a hexaglycosyl phosphate repeat consisting of [→6)-β-D-Glcp-(1-3)-β-D-GalpNAc-(1-4)-α-D-Glcp-(1-4)-[β-D-Glcp(1-3]-β-D-GalpNAc-(1-3)-α-D-Manp-(1-P→].
T6 839-1003 Sentence denotes In addition, analysis of phenol soluble polysaccharides revealed a similarly conserved lipoteichoic acid (LTA) which could be detected on whole cells by HR-MAS NMR.
T7 1004-1206 Sentence denotes Conventional NMR and mass spectrometry analysis indicated that the structure of this LTA consisted of the repeat unit [→6)-α-D-GlcpNAc-(1-3)-[→P-6]-α-D-GlcpNAc-(1-2)-D-GroA] where GroA is glyceric acid.
T8 1207-1313 Sentence denotes The repeating units were linked by a phosphodiester bridge between C-6 of the two GlcNAc residues (6-P-6).
T9 1314-1401 Sentence denotes A minor component consisted of GlcpN-(1-3) instead of GlcpNAc-(1-3) in the repeat unit.
T10 1402-1566 Sentence denotes Through a 6-6 phosphodiester bridge this polymer was linked to →6)-β-D-Glcp-(1-6)-β-D-Glcp-(1-6)-β-D-Glcp-(1-1)-Gro, with glycerol (Gro) substituted by fatty acids.
T11 1567-1762 Sentence denotes This is the first report of the utility of HR-MAS NMR in the examination of surface carbohydrates of Gram positive bacteria and identification of a novel LTA structure from Clostridium difficile.