> top > projects

Projects

NameT Description# Ann.AuthorMaintainerUpdated_atStatus

41-60 / 593 show all
GlycoBiology-GO GO-based annotation to GlycoBiology abstracts0Jin-Dong Kim2023-11-29Testing
SPECIES800_autotagged This project comprises the SPECIES800 corpus documents automatically annotated by the Jensenlab tagger. Annotated entity types are: Genes/proteins from the mentioned organisms (and any human ones) PubChem Compound identifiers NCBI Taxonomy entries Gene Ontology cellular component terms BRENDA Tissue Ontology terms Disease Ontology terms Environment Ontology terms The SPECIES 800 (S800) comprises 800 PubMed abstracts. In its original form species mentions were manually identified and mapped to the corresponding NCBI Taxonomy identifiers. Described in: The SPECIES and ORGANISMS Resources for Fast and Accurate Identification of Taxonomic Names in Text. Pafilis E, Frankild SP, Fanini L, Faulwetter S, Pavloudi C, et al. (2013). PLoS ONE, 2013, 8(6): e65390. doi:10.1371/journal.pone.0065390. The manually annotated corpus is also available as a PubAnnotation project (see here). 0Evangelos Pafilis, Sampo Pyysalo, Lars Juhl Jensenevangelos2015-11-20Testing
LitCovid-PD-HP 922 KJin-Dong Kim2023-11-28Beta
TEST-CellLine Annotation: AnnotationByCellosaurus76Yasunori Yamamoto2023-11-29Testing
GlycoBiology-PACDB cGGDB-based annotation to GlycoBiology abstracts3.03 KToshihide Shikanaishikanai2023-11-27Testing
LitCoin-MONDO_bioort2019 DiseaeseOrPhenotypicFeature3.72 KEisuke Dohi2023-11-29Testing
MENA-example 5Jin-Dong Kim2023-11-29
GlycoBiology-cGGDB cGGDB-based annotation to GlycoBiology abstracts36Toshihide Shikanaishikanai2023-11-28Testing
pubtator-sample Sample annotation of PubTator produced by Zhiyong Lu et al.28Zhiyong LuJin-Dong Kim2023-11-27Testing
GlycoConjugate-collection The PubMed entries (titles and abstracts) from the journal of GlycoConjugate0Jin-Dong Kim2023-11-28Developing
GlycoBiology-FMA FMA ontology-based annotation to GlycoBiology abstracts96.3 KJin-Dong Kim2023-11-29Testing
BioASQ-sample collection of PubMed articles which appear in the BioASQ sample data set.0BioASQJin-Dong Kim2023-11-28Testing
relna https://www.tagtog.net/jmcejuela/relna2.77 KAshish Baghudana and Juan Miguel Cejuelatagtog2023-11-29Developing
AGCA_Sue Active Gene Annotation Corpus for the Application in Drug Repurposing Discovery0Jingbo Xia, Xuan Qin, Kaiyin Zhou2023-11-29Developing
GlycoBiology-Motifs 4.15 KJin-Dong Kim2023-11-29
PubMed-2000 abstracts published in 2000.0Jin-Dong Kim2023-11-29Developing
GlycoGenes annotation for glyco-genes based on GGDB1.01 KJin-Dong Kim2023-11-29Developing
DisGeNET5_variant_disease The file contains variant-disease associations obtained by text mining MEDLINE abstracts using the BeFree system, including the variant and disease off sets. 144 KIBI GroupYue Wang2023-11-24Released
GlyCosmos600-GlycoEpitope 277Jin-Dong Kim2023-11-27Testing
LitCoin-GeneOrGeneProduct-v2 threshold = 0.938.98 KJin-Dong Kim2023-11-29
NameT # Ann.AuthorMaintainerUpdated_atStatus

41-60 / 593 show all
GlycoBiology-GO 0Jin-Dong Kim2023-11-29Testing
SPECIES800_autotagged 0Evangelos Pafilis, Sampo Pyysalo, Lars Juhl Jensenevangelos2015-11-20Testing
LitCovid-PD-HP 922 KJin-Dong Kim2023-11-28Beta
TEST-CellLine 76Yasunori Yamamoto2023-11-29Testing
GlycoBiology-PACDB 3.03 KToshihide Shikanaishikanai2023-11-27Testing
LitCoin-MONDO_bioort2019 3.72 KEisuke Dohi2023-11-29Testing
MENA-example 5Jin-Dong Kim2023-11-29
GlycoBiology-cGGDB 36Toshihide Shikanaishikanai2023-11-28Testing
pubtator-sample 28Zhiyong LuJin-Dong Kim2023-11-27Testing
GlycoConjugate-collection 0Jin-Dong Kim2023-11-28Developing
GlycoBiology-FMA 96.3 KJin-Dong Kim2023-11-29Testing
BioASQ-sample 0BioASQJin-Dong Kim2023-11-28Testing
relna 2.77 KAshish Baghudana and Juan Miguel Cejuelatagtog2023-11-29Developing
AGCA_Sue 0Jingbo Xia, Xuan Qin, Kaiyin Zhou2023-11-29Developing
GlycoBiology-Motifs 4.15 KJin-Dong Kim2023-11-29
PubMed-2000 0Jin-Dong Kim2023-11-29Developing
GlycoGenes 1.01 KJin-Dong Kim2023-11-29Developing
DisGeNET5_variant_disease 144 KIBI GroupYue Wang2023-11-24Released
GlyCosmos600-GlycoEpitope 277Jin-Dong Kim2023-11-27Testing
LitCoin-GeneOrGeneProduct-v2 8.98 KJin-Dong Kim2023-11-29