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NameTDescription# Ann.AuthorMaintainerUpdated_atStatus

61-80 / 218 show all
funRiceGenes-all 1.51 KPubDictionariesYue Wang2019-12-05Developing
funRiceGenes-exact 841Yue Wang2019-12-05Developing
CORD-19-sample-paragraphs 28Jin-Dong Kim2020-04-08Developing
CORD-19-sample-sentences 161Jin-Dong Kim2020-04-08Developing
CORD-19-sample-UBERON 54Jin-Dong Kim2020-04-08Developing
CORD-PICO Automatic annotation of the CORD-19 dataset with PICO categories. The corpus was automatically labeled with an LSTM-CRF model trained on human-annotated PubMed abstracts from https://github.com/bepnye/EBM-NLP. Currently, titles and abstracts only are annotated using Population, Intervention and Outcome labels, as well as more fine-grained labels such as Age, Drug, Mortality and others.69.6 KSimon Susterssuster2020-04-10Developing
CORD-19-sample-IDO 76Jin-Dong Kim2020-04-13Developing
Epistemic_Statements The goal of this work is to identify epistemic statements in the scientific literature. An epistemic statement is a statement of unknowns, hypotheses, speculations, uncertainties, including statements of claims, hypotheses, questions, explanations, future opportunities, surprises, issues, or concerns within a sentence. The unit of an epistemic statement is a sentence automatically parsed. The classification is binary - epistemic statement or not. We will label epistemic statements only and one can assume that if a statement is not labeled, then it is not an epistemic statement. The classifier is a CRF, trained on gold standard annotations of epistemic statements that are currently ongoing. We report an F-measure of 0.91 after 5-fold cross validation on a test set with 914 statements and an F-measure of 0.9 on a held out document with 130 statements. This project is still under development and is submitted to be used for the CovidLit project and associated Hackathon. Please contact Mayla if you have any questions.1.42 Mmboguslav2020-04-16Developing
CORD-19-sample-MONDO 113Jin-Dong Kim2020-04-18Developing
CORD-19-sample-HP 39Jin-Dong Kim2020-04-18Developing
CORD-19-sample-CHEBI 16Jin-Dong Kim2020-04-19Developing
CORD-19-sample-FMA-UBERON 61Jin-Dong Kim2020-04-19Developing
LitCovid-TimeML 426 KJin-Dong Kim2020-04-28Developing
Goldhamster2_Cellosaurus 27.5 Kzebet2020-08-12Developing
tees-test Random PMC document used for testing during the development of a RESTful TEES parsing web service.467Nico ColicNico Colic2020-09-09Developing
LappsTest Project to test posting annotations directly from the Language Applications Grid2.67 KKeith Sudermanksuderman2020-09-18Developing
ICD10 Annotation for disease names as defined in ICD101.6 KDBCLSJin-Dong Kim2020-10-02Developing
Biotea NCBO annotation on full text for PMC articles. Currently including only a small set of 2811 articles corresponding to those supporting curated diesease-protein annotation from UniProt and with machine-processable full text.894 KL. Garcia2020-10-02Developing
PubMed-German-test A collection of PubMed abstracts which are written in German0Jin-Dong Kim2020-12-13Developing
PubMed-French-test A collection of PubMed abstract written in French0Jin-Dong Kim2020-12-13Developing
NameT# Ann.AuthorMaintainerUpdated_atStatus

61-80 / 218 show all
funRiceGenes-all 1.51 KPubDictionariesYue Wang2019-12-05Developing
funRiceGenes-exact 841Yue Wang2019-12-05Developing
CORD-19-sample-paragraphs 28Jin-Dong Kim2020-04-08Developing
CORD-19-sample-sentences 161Jin-Dong Kim2020-04-08Developing
CORD-19-sample-UBERON 54Jin-Dong Kim2020-04-08Developing
CORD-PICO 69.6 KSimon Susterssuster2020-04-10Developing
CORD-19-sample-IDO 76Jin-Dong Kim2020-04-13Developing
Epistemic_Statements 1.42 Mmboguslav2020-04-16Developing
CORD-19-sample-MONDO 113Jin-Dong Kim2020-04-18Developing
CORD-19-sample-HP 39Jin-Dong Kim2020-04-18Developing
CORD-19-sample-CHEBI 16Jin-Dong Kim2020-04-19Developing
CORD-19-sample-FMA-UBERON 61Jin-Dong Kim2020-04-19Developing
LitCovid-TimeML 426 KJin-Dong Kim2020-04-28Developing
Goldhamster2_Cellosaurus 27.5 Kzebet2020-08-12Developing
tees-test 467Nico ColicNico Colic2020-09-09Developing
LappsTest 2.67 KKeith Sudermanksuderman2020-09-18Developing
ICD10 1.6 KDBCLSJin-Dong Kim2020-10-02Developing
Biotea 894 KL. Garcia2020-10-02Developing
PubMed-German-test 0Jin-Dong Kim2020-12-13Developing
PubMed-French-test 0Jin-Dong Kim2020-12-13Developing