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NameTDescription# Ann.AuthorMaintainerUpdated_atStatus

21-40 / 238 show all
LitCovid-PD-MONDO-v1 PubDictionaries annotation for disease terms - updated at 2020-04-20 It is based on MONDO Version 2020-04-20. The terms in MONDO are loaded in PubDictionaries, with which the annotations in this project are produced. The parameter configuration used for this project is here. Note that it is an automatically generated dictionary-based annotation. It will be updated periodically, as the documents are increased, and the dictionary is improved.13.4 KJin-Dong Kim2023-11-29Released
LitCovid-docs-s 0Jin-Dong Kim2023-11-29Released
GlyCosmos600-docs A random collection of 600 PubMed abstracts from 6 glycobiology-related journals: Glycobiology, Glycoconjugate journal, The Journal of biological chemistry, Journal of proteome research, Journal of proteomics, and Carbohydrate research. The whole PMIDs were collected on June 11, 2019. From each journal, 100 PMIDs were randomly sampled.0Jin-Dong Kim2023-11-29Released
CORD-19_All_docs All the documents in the whole CORD-19 dataset. The documents in this project will be updated as the CORD-19 dataset grows. See the COVID DATASET LICENSE AGREEMENT.0Jin-Dong Kim2023-11-29Released
CORD-19_Commercial_use_subset The Commercial use subset of the CORD-19 dataset. The documents in this project will be updated as the CORD-19 dataset grows. See the COVID DATASET LICENSE AGREEMENT.0Jin-Dong Kim2023-11-29Released
CORD-19_Non-commercial_use_subset The Non commercial use subset of the CORD-19 dataset. The documents in this project will be updated as the CORD-19 dataset grows. See the COVID DATASET LICENSE AGREEMENT.0Jin-Dong Kim2023-11-29Released
CORD-19_bioRxiv_medRxiv_subset The bioRxiv/medRxiv subset of the CORD-19 dataset: pre-prints that are not peer reviewed. The documents in this project will be updated as the CORD-19 dataset grows. See the COVID DATASET LICENSE AGREEMENT. 0Jin-Dong Kim2023-11-29Released
bionlp-st-ge-2016-reference-tees NER and event extraction produced by TEES (with the default GE11 model) for the 20 full papers used in the BioNLP 2016 GE task reference corpus.14.6 KNico Colic Nico Colic2023-11-29Released
bionlp-st-ge-2016-test-tees NER and event extraction produced by TEES (with the default GE11 model) for the 14 full papers used in the BioNLP 2016 GE task test corpus.9.17 KNico ColicNico Colic2023-11-29Released
LitCovid-OGER Using OGER (http://www.ontogene.org/resources/oger) to detect entities from 10 different vocabularies9.31 KFabio RinaldiNico Colic2023-11-29Released
PubmedHPO Human phenotype annotation to PubMed abstracts, based on the HPO ontology12.4 MTudor Grozatudor2023-11-24Beta
LitCovid-PubTator 5.88 MJin-Dong Kim2023-11-24Beta
PubCasesHPO HPO annotation in PubCases3.18 MToyofumi Fujiwara2023-11-24Beta
DisGeNET Disease-Gene association annotation.3.12 MNuria Queralt Jin-Dong Kim2023-11-24Beta
NEUROSES This corpus is composed of PubMed articles containing cognitive enhancers and anti-depressants drug mentions. The selected sentences are automatically annotated using the NCBO Annotator with the Chemical Entities of Biological Interest (CHEBI) and Phenotypic Quality Ontology (PATO) ontologies, we also produced annotations using PhenoMiner ontology via a dictionary-based tagger.2.14 Mnestoralvaro2023-11-24Beta
PubCasesORDO ORDO annotation in PubCases865 KToyofumi Fujiwara2023-11-24Beta
LitCovid-PD-HP 922 KJin-Dong Kim2023-11-28Beta
LitCovid-sample-PD-IDO 1.27 KJin-Dong Kim2023-11-28Beta
LitCovid-PAS-Enju Predicate-argument structure annotation produced by the Enju parser.125 KJin-Dong Kim2023-11-28Beta
LitCovid-sample-PD-FMA 1.93 KJin-Dong Kim2023-11-28Beta
NameT# Ann.AuthorMaintainerUpdated_atStatus

21-40 / 238 show all
LitCovid-PD-MONDO-v1 13.4 KJin-Dong Kim2023-11-29Released
LitCovid-docs-s 0Jin-Dong Kim2023-11-29Released
GlyCosmos600-docs 0Jin-Dong Kim2023-11-29Released
CORD-19_All_docs 0Jin-Dong Kim2023-11-29Released
CORD-19_Commercial_use_subset 0Jin-Dong Kim2023-11-29Released
CORD-19_Non-commercial_use_subset 0Jin-Dong Kim2023-11-29Released
CORD-19_bioRxiv_medRxiv_subset 0Jin-Dong Kim2023-11-29Released
bionlp-st-ge-2016-reference-tees 14.6 KNico Colic Nico Colic2023-11-29Released
bionlp-st-ge-2016-test-tees 9.17 KNico ColicNico Colic2023-11-29Released
LitCovid-OGER 9.31 KFabio RinaldiNico Colic2023-11-29Released
PubmedHPO 12.4 MTudor Grozatudor2023-11-24Beta
LitCovid-PubTator 5.88 MJin-Dong Kim2023-11-24Beta
PubCasesHPO 3.18 MToyofumi Fujiwara2023-11-24Beta
DisGeNET 3.12 MNuria Queralt Jin-Dong Kim2023-11-24Beta
NEUROSES 2.14 Mnestoralvaro2023-11-24Beta
PubCasesORDO 865 KToyofumi Fujiwara2023-11-24Beta
LitCovid-PD-HP 922 KJin-Dong Kim2023-11-28Beta
LitCovid-sample-PD-IDO 1.27 KJin-Dong Kim2023-11-28Beta
LitCovid-PAS-Enju 125 KJin-Dong Kim2023-11-28Beta
LitCovid-sample-PD-FMA 1.93 KJin-Dong Kim2023-11-28Beta