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NameTDescription# Ann.AuthorMaintainerUpdated_atStatus

21-40 / 224 show all
spacy-test Random set of articles used for testing in the development of the RESTful spaCy parsing web service. Since development is now finished, they are released for the community to use.131 KNico ColicNico Colic2021-03-10Released
DisGeNET5_gene_disease The file contains gene-disease associations obtained by text mining MEDLINE abstracts using the BeFree system including the gene and disease off sets.2.04 MIBI GroupYue Wang2021-03-11Released
LitCovid-docs-s 0Jin-Dong Kim2021-10-18Released
LitCovid-OGER-BB Using OGER (www.ontogene.com) and Biobert to obtain annotations for 10 different vocabularies.308 KFabio RinaldiNico Colic2021-10-18Released
Zoonoses_partialAnnotation This is a part of Zoonoses project used by PanZoora. But Zoonoses project provides whole manual annotated data but this is partial ones.266AikoHIRAKI2021-12-01Released
TEST-DiseaseOrPhenotypicFeature Annotated by Mesh_All_FN795Eisuke Dohi2021-12-23Released
geneset_names 0alo332022-04-26Released
Inflammaging Inflammation axis23.4 Malo332022-06-08Released
CORD-19-PD-MONDO PubDictionaries annotation for MONDO terms - updated at 2020-04-30 It is disease term annotation based on MONDO. Version 2020-04-20. The terms in MONDO are loaded in PubDictionaries, with which the annotations in this project are produced. The parameter configuration used for this project is here. Note that it is an automatically generated dictionary-based annotation. It will be updated periodically, as the documents are increased, and the dictionary is improved.6.32 MJin-Dong Kim2022-06-14Released
LitCovid-OGER Using OGER (http://www.ontogene.org/resources/oger) to detect entities from 10 different vocabularies9.31 KFabio RinaldiNico Colic2022-09-01Released
LitCovid-PAS-Enju Predicate-argument structure annotation produced by the Enju parser.125 KJin-Dong Kim2020-03-25Beta
bionlp-st-ge-2016-uniprot UniProt protein annotation to the benchmark data set of BioNLP-ST 2016 GE task: reference data set (bionlp-st-ge-2016-reference) and test data set (bionlp-st-ge-2016-test). The annotations are produced based on a dictionary which is semi-automatically compiled for the 34 full paper articles included in the benchmark data set (20 in the reference data set + 14 in the test data set). For detailed information about BioNLP-ST GE 2016 task data sets, please refer to the benchmark reference data set (bionlp-st-ge-2016-reference) and benchmark test data set (bionlp-st-ge-2016-test). 16.2 KDBCLSJin-Dong Kim2020-10-02Beta
LitCovid-sample-sentences 2.3 KJin-Dong Kim2021-01-14Beta
LitCovid-sample-PD-FMA 1.93 KJin-Dong Kim2021-01-14Beta
LitCovid-sample-PD-IDO 1.27 KJin-Dong Kim2021-01-14Beta
LitCovid-sample-PD-UBERON PubDictionaries annotation for UBERON terms - updated at 2020-04-30 It is annotation for anatomical entities based on Uberon. The terms in Uberon are uploaded in PubDictionaries (Uberon), with which the annotations in this project are produced. The parameter configuration used for this project is here. Note that it is an automatically generated dictionary-based annotation. It will be updated periodically, as the documents are increased, and the dictionary is improved. 310Jin-Dong Kim2021-01-14Beta
LitCovid-sample-PD-NCBITaxon 1.35 KJin-Dong Kim2021-01-14Beta
LitCovid-sample-PD-GO-BP-0 708Jin-Dong Kim2021-01-16Beta
NEUROSES This corpus is composed of PubMed articles containing cognitive enhancers and anti-depressants drug mentions. The selected sentences are automatically annotated using the NCBO Annotator with the Chemical Entities of Biological Interest (CHEBI) and Phenotypic Quality Ontology (PATO) ontologies, we also produced annotations using PhenoMiner ontology via a dictionary-based tagger.2.14 Mnestoralvaro2021-03-10Beta
PubCasesORDO ORDO annotation in PubCases865 KToyofumi Fujiwara2021-03-11Beta
NameT# Ann.AuthorMaintainerUpdated_atStatus

21-40 / 224 show all
spacy-test 131 KNico ColicNico Colic2021-03-10Released
DisGeNET5_gene_disease 2.04 MIBI GroupYue Wang2021-03-11Released
LitCovid-docs-s 0Jin-Dong Kim2021-10-18Released
LitCovid-OGER-BB 308 KFabio RinaldiNico Colic2021-10-18Released
Zoonoses_partialAnnotation 266AikoHIRAKI2021-12-01Released
TEST-DiseaseOrPhenotypicFeature 795Eisuke Dohi2021-12-23Released
geneset_names 0alo332022-04-26Released
Inflammaging 23.4 Malo332022-06-08Released
CORD-19-PD-MONDO 6.32 MJin-Dong Kim2022-06-14Released
LitCovid-OGER 9.31 KFabio RinaldiNico Colic2022-09-01Released
LitCovid-PAS-Enju 125 KJin-Dong Kim2020-03-25Beta
bionlp-st-ge-2016-uniprot 16.2 KDBCLSJin-Dong Kim2020-10-02Beta
LitCovid-sample-sentences 2.3 KJin-Dong Kim2021-01-14Beta
LitCovid-sample-PD-FMA 1.93 KJin-Dong Kim2021-01-14Beta
LitCovid-sample-PD-IDO 1.27 KJin-Dong Kim2021-01-14Beta
LitCovid-sample-PD-UBERON 310Jin-Dong Kim2021-01-14Beta
LitCovid-sample-PD-NCBITaxon 1.35 KJin-Dong Kim2021-01-14Beta
LitCovid-sample-PD-GO-BP-0 708Jin-Dong Kim2021-01-16Beta
NEUROSES 2.14 Mnestoralvaro2021-03-10Beta
PubCasesORDO 865 KToyofumi Fujiwara2021-03-11Beta