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NameTDescription# Ann.AuthorMaintainer Updated_atStatus

181-200 / 238 show all
bionlp-st-ge-2016-spacy-parsed Dependency parses produced by spaCy parser, and part-of-speech tags produced by Stanford tagger (with the wsj-0-18-left3words-nodistsim model). The exact procedure is described here. Data set contains the 34 full paper articles used in the BioNLP 2016 GE task. 225 KNico ColicNico Colic2023-11-29Released
bionlp-st-ge-2016-test-tees NER and event extraction produced by TEES (with the default GE11 model) for the 14 full papers used in the BioNLP 2016 GE task test corpus.9.17 KNico ColicNico Colic2023-11-29Released
PA-LLM 🖐️ LLMs for biomedical text summarisation0Nico Colic2024-01-19Developing
LitCovid-OGER Using OGER (http://www.ontogene.org/resources/oger) to detect entities from 10 different vocabularies9.31 KFabio RinaldiNico Colic2023-11-29Released
bionlp-st-ge-2016-reference-tees NER and event extraction produced by TEES (with the default GE11 model) for the 20 full papers used in the BioNLP 2016 GE task reference corpus.14.6 KNico Colic Nico Colic2023-11-29Released
spacy-test Random set of articles used for testing in the development of the RESTful spaCy parsing web service. Since development is now finished, they are released for the community to use.131 KNico ColicNico Colic2023-11-29Released
LitCovid-PMC-OGER-BB Annotating PMC articles with OGER and BioBert, according to an hand-crafted Covid-specific dictionary and the 10 different CRAFT ontologies (http://bionlp-corpora.sourceforge.net/CRAFT/): Chemical Entities of Biological Interest (CHEBI), Cell Ontology (CL), Entrez Gene (UBERON), Gene Ontology (biological process (GO-BP), cellular component (GO-CC), and molecular function (GO-MF), NCBI Taxonomy (NCBITaxon), Protein Ontology (PR), Sequence Ontology (SO)3.14 MFabio RinaldiNico Colic2023-11-24Developing
tees-test Random PMC document used for testing during the development of a RESTful TEES parsing web service.3.39 KNico ColicNico Colic2023-11-24Developing
oger-json-test Test corpus for testing OGER web service97.6 KNico Colic2023-11-29Testing
Grays_part2 Osteology w/o 218.63 Kokubo2023-11-29Testing
PT_NER_NEL Annotations in Portuguese COVID-19 related abstracts from MeSH terminology245LASIGE-DeSTpruas_182023-11-29Developing
chemicals 0pruas_182023-11-29Uploading
ENG_NER_NEL Annotations in COVID-19 related PubMed abstracts from the following ontologies: Disease Ontology ("do"), Gene Ontology ("go"), Human Phenotype Ontology ("hpo"), ChEBI ontology ("chebi"), MeSH 493LASIGE-DeSTpruas_182023-11-26Developing
AlvisNLP-Async-Test Test for the asynchronous AlvisNLP/ML annotator family.0Robert Bossyrbossy2023-11-26Testing
silkworm_phenotype 3.86 Kshigen2023-11-29Developing
GlycoBiology-GDGDB GDGDB-based annotation to GlycoBiology abstracts 2.46 KToshihide Shikanaishikanai2023-11-29Testing
GlycoBiology-cGGDB cGGDB-based annotation to GlycoBiology abstracts36Toshihide Shikanaishikanai2023-11-28Testing
GlycoBiology-PACDB cGGDB-based annotation to GlycoBiology abstracts3.03 KToshihide Shikanaishikanai2023-11-27Testing
LitCoin-PubTator-for-Tuning-SeqVar 127shuo502023-11-29Testing
GlycoBiology-Epitope GlycoEpitope-based annotation to GlycoBiology abstracts3.18 KShujiro Okudashuo502023-11-29Testing
NameT# Ann.AuthorMaintainer Updated_atStatus

181-200 / 238 show all
bionlp-st-ge-2016-spacy-parsed 225 KNico ColicNico Colic2023-11-29Released
bionlp-st-ge-2016-test-tees 9.17 KNico ColicNico Colic2023-11-29Released
PA-LLM 0Nico Colic2024-01-19Developing
LitCovid-OGER 9.31 KFabio RinaldiNico Colic2023-11-29Released
bionlp-st-ge-2016-reference-tees 14.6 KNico Colic Nico Colic2023-11-29Released
spacy-test 131 KNico ColicNico Colic2023-11-29Released
LitCovid-PMC-OGER-BB 3.14 MFabio RinaldiNico Colic2023-11-24Developing
tees-test 3.39 KNico ColicNico Colic2023-11-24Developing
oger-json-test 97.6 KNico Colic2023-11-29Testing
Grays_part2 8.63 Kokubo2023-11-29Testing
PT_NER_NEL 245LASIGE-DeSTpruas_182023-11-29Developing
chemicals 0pruas_182023-11-29Uploading
ENG_NER_NEL 493LASIGE-DeSTpruas_182023-11-26Developing
AlvisNLP-Async-Test 0Robert Bossyrbossy2023-11-26Testing
silkworm_phenotype 3.86 Kshigen2023-11-29Developing
GlycoBiology-GDGDB 2.46 KToshihide Shikanaishikanai2023-11-29Testing
GlycoBiology-cGGDB 36Toshihide Shikanaishikanai2023-11-28Testing
GlycoBiology-PACDB 3.03 KToshihide Shikanaishikanai2023-11-27Testing
LitCoin-PubTator-for-Tuning-SeqVar 127shuo502023-11-29Testing
GlycoBiology-Epitope 3.18 KShujiro Okudashuo502023-11-29Testing