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Projects

NameTDescription# Ann.AuthorMaintainerUpdated_atStatus

1-20 / 218 show all
LitCovid-OGER Using OGER (http://www.ontogene.org/resources/oger) to detect entities from 10 different vocabularies9.31 KFabio RinaldiNico Colic2022-09-01Released
CORD-19-PD-MONDO PubDictionaries annotation for MONDO terms - updated at 2020-04-30 It is disease term annotation based on MONDO. Version 2020-04-20. The terms in MONDO are loaded in PubDictionaries, with which the annotations in this project are produced. The parameter configuration used for this project is here. Note that it is an automatically generated dictionary-based annotation. It will be updated periodically, as the documents are increased, and the dictionary is improved.6.32 MJin-Dong Kim2022-06-14Released
Inflammaging Inflammation axis23.4 Malo332022-06-08Released
geneset_names 0alo332022-04-26Released
TEST-DiseaseOrPhenotypicFeature Annotated by Mesh_All_FN795Eisuke Dohi2021-12-23Released
Zoonoses_partialAnnotation This is a part of Zoonoses project used by PanZoora. But Zoonoses project provides whole manual annotated data but this is partial ones.266AikoHIRAKI2021-12-01Released
LitCovid-OGER-BB Using OGER (www.ontogene.com) and Biobert to obtain annotations for 10 different vocabularies.308 KFabio RinaldiNico Colic2021-10-18Released
LitCovid-docs-s 0Jin-Dong Kim2021-10-18Released
DisGeNET5_gene_disease The file contains gene-disease associations obtained by text mining MEDLINE abstracts using the BeFree system including the gene and disease off sets.2.04 MIBI GroupYue Wang2021-03-11Released
spacy-test Random set of articles used for testing in the development of the RESTful spaCy parsing web service. Since development is now finished, they are released for the community to use.131 KNico ColicNico Colic2021-03-10Released
PubMed_ArguminSci Predictions for PubMed automatically extracted with the ArguminSci tool (https://github.com/anlausch/ArguminSci).777 Kzebet2021-03-10Released
LitCovid-sentences-v1 Sentence segmentation of all the texts in the LitCovid literature. The segmentation is automatically obtained using the TextSentencer annotation service developed and maintained by DBCLS.16.5 KJin-Dong Kim2021-01-17Released
LitCovid-PD-MONDO-v1 PubDictionaries annotation for disease terms - updated at 2020-04-20 It is based on MONDO Version 2020-04-20. The terms in MONDO are loaded in PubDictionaries, with which the annotations in this project are produced. The parameter configuration used for this project is here. Note that it is an automatically generated dictionary-based annotation. It will be updated periodically, as the documents are increased, and the dictionary is improved.13.4 KJin-Dong Kim2020-11-20Released
LitCovid-PD-HP-v1 PubDictionaries annotation for human phenotype terms - updated at 2020-04-20 Disease term annotation based on HP. Version 2020-04-20. The terms in HP are loaded in PubDictionaries, with which the annotations in this project are produced. The parameter configuration used for this project is here. Note that it is an automatically generated dictionary-based annotation. It will be updated periodically, as the documents are increased, and the dictionary is improved.3.03 KJin-Dong Kim2020-11-20Released
LitCovid-PD-FMA-UBERON-v1 PubDictionaries annotation for anatomy terms - updated at 2020-04-20 Disease term annotation based on FMA and Uberon. Version 2020-04-20. The terms in FMA and Uberon are loaded in PubDictionaries (FMA and Uberon), with which the annotations in this project are produced. The parameter configuration used for this project is here for FMA and there for Uberon. Note that it is an automatically generated dictionary-based annotation. It will be updated periodically, as the documents are increased, and the dictionary is improved.4.3 KJin-Dong Kim2020-11-20Released
craft-sa-dev Development data for CRAFT SA shared task. This project contains the development (training) annotations for the Structural Annotation task of the CRAFT Shared Task 2019. This particular set contains token and sentence annotations with tokens linked via dependency relations. These dependency relations were automatically generated using the manually curated CRAFT constituency treebank files as input.490 KUniversity of Colorado Anschutz Medical Campuscraft-st2020-10-02Released
bionlp-st-ge-2016-test-tees NER and event extraction produced by TEES (with the default GE11 model) for the 14 full papers used in the BioNLP 2016 GE task test corpus.9.17 KNico ColicNico Colic2020-10-02Released
bionlp-st-ge-2016-spacy-parsed Dependency parses produced by spaCy parser, and part-of-speech tags produced by Stanford tagger (with the wsj-0-18-left3words-nodistsim model). The exact procedure is described here. Data set contains the 34 full paper articles used in the BioNLP 2016 GE task. 225 KNico ColicNico Colic2020-10-02Released
bionlp-st-ge-2016-reference-tees NER and event extraction produced by TEES (with the default GE11 model) for the 20 full papers used in the BioNLP 2016 GE task reference corpus.14.6 KNico Colic Nico Colic2020-09-13Released
CORD-19-PD-HP PubDictionaries annotation for HP terms - updated at 2020-04-30 Disease term annotation based on HP. Version 2020-04-20. The terms in HP are loaded in PubDictionaries, with which the annotations in this project are produced. The parameter configuration used for this project is here. Note that it is an automatically generated dictionary-based annotation. It will be updated periodically, as the documents are increased, and the dictionary is improved.1.15 MJin-Dong Kim2020-05-12Released
NameT# Ann.AuthorMaintainerUpdated_atStatus

1-20 / 218 show all
LitCovid-OGER 9.31 KFabio RinaldiNico Colic2022-09-01Released
CORD-19-PD-MONDO 6.32 MJin-Dong Kim2022-06-14Released
Inflammaging 23.4 Malo332022-06-08Released
geneset_names 0alo332022-04-26Released
TEST-DiseaseOrPhenotypicFeature 795Eisuke Dohi2021-12-23Released
Zoonoses_partialAnnotation 266AikoHIRAKI2021-12-01Released
LitCovid-OGER-BB 308 KFabio RinaldiNico Colic2021-10-18Released
LitCovid-docs-s 0Jin-Dong Kim2021-10-18Released
DisGeNET5_gene_disease 2.04 MIBI GroupYue Wang2021-03-11Released
spacy-test 131 KNico ColicNico Colic2021-03-10Released
PubMed_ArguminSci 777 Kzebet2021-03-10Released
LitCovid-sentences-v1 16.5 KJin-Dong Kim2021-01-17Released
LitCovid-PD-MONDO-v1 13.4 KJin-Dong Kim2020-11-20Released
LitCovid-PD-HP-v1 3.03 KJin-Dong Kim2020-11-20Released
LitCovid-PD-FMA-UBERON-v1 4.3 KJin-Dong Kim2020-11-20Released
craft-sa-dev 490 KUniversity of Colorado Anschutz Medical Campuscraft-st2020-10-02Released
bionlp-st-ge-2016-test-tees 9.17 KNico ColicNico Colic2020-10-02Released
bionlp-st-ge-2016-spacy-parsed 225 KNico ColicNico Colic2020-10-02Released
bionlp-st-ge-2016-reference-tees 14.6 KNico Colic Nico Colic2020-09-13Released
CORD-19-PD-HP 1.15 MJin-Dong Kim2020-05-12Released