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NameT Description# Ann.AuthorMaintainerUpdated_atStatus

201-220 / 238 show all
Glycosmos6-GlycoEpitope Automatic annotation by PD-GlycoEpitope.19.9 KJin-Dong Kim2023-11-28Developing
GlyCosmos6-UBERON 689 KJin-Dong Kim2023-12-15Developing
PA-LLM 🖐️ LLMs for biomedical text summarisation0Nico Colic2024-01-19Developing
GlyCosmos6-Glycan-Motif-Structure Automatic annotation by Covid-19_Glycan-Motif.107 KJin-Dong Kim2023-11-24Developing
PA-LLM-test 0Nico Colic2024-01-19Testing
NCBITAXON annotation for NCBI taxonomy. Automatic annotation by PD-NCBITaxon.502 KJin-Dong Kim2023-11-24Developing
Inflammaging Inflammation axis23.4 Malo332023-11-24Released
MyTest 9.81 MJin-Dong Kim2023-11-24Testing
Allie An annotation set of abbreviations and expanded forms extracted from PubMed/MEDLINE by machines.8.7 MDatabase Center for Life ScienceYasunori Yamamoto2023-11-24Developing
LitCovid-sentences 5.63 MJin-Dong Kim2023-11-24Developing
CORD-19_Custom_license_subset The Custom license subset of the CORD-19 dataset. The documents in this project will be updated as the CORD-19 dataset grows. See the COVID DATASET LICENSE AGREEMENT.5.08 MJin-Dong Kim2023-11-24Released
PubCasesHPO HPO annotation in PubCases3.18 MToyofumi Fujiwara2023-11-24Beta
CORD-19-PD-UBERON PubDictionaries annotation for UBERON terms - updated at 2020-04-30 It is disease term annotation based on Uberon. The terms in Uberon are uploaded in PubDictionaries (Uberon), with which the annotations in this project are produced. The parameter configuration used for this project is here. Note that it is an automatically generated dictionary-based annotation. It will be updated periodically, as the documents are increased, and the dictionary is improved.1.42 MJin-Dong Kim2023-11-24Released
Epistemic_Statements The goal of this work is to identify epistemic statements in the scientific literature. An epistemic statement is a statement of unknowns, hypotheses, speculations, uncertainties, including statements of claims, hypotheses, questions, explanations, future opportunities, surprises, issues, or concerns within a sentence. The unit of an epistemic statement is a sentence automatically parsed. The classification is binary - epistemic statement or not. We will label epistemic statements only and one can assume that if a statement is not labeled, then it is not an epistemic statement. The classifier is a CRF, trained on gold standard annotations of epistemic statements that are currently ongoing. We report an F-measure of 0.91 after 5-fold cross validation on a test set with 914 statements and an F-measure of 0.9 on a held out document with 130 statements. This project is still under development and is submitted to be used for the CovidLit project and associated Hackathon. Please contact Mayla if you have any questions.1.42 Mmboguslav2023-11-24Developing
biomarkers IL/TNF biomarkers857 Kalo332023-11-24
Covid19_manual_annotation_v2 4.58 KAikoHIRAKI2023-11-24Developing
PubMed-German-test A collection of PubMed abstracts which are written in German0Jin-Dong Kim2023-11-24Developing
PubMed-2017 abstracts published in 2017.0Jin-Dong Kim2023-11-24Developing
speech-test 6Jin-Dong Kim2023-11-26Testing
ENG_NER_NEL Annotations in COVID-19 related PubMed abstracts from the following ontologies: Disease Ontology ("do"), Gene Ontology ("go"), Human Phenotype Ontology ("hpo"), ChEBI ontology ("chebi"), MeSH 493LASIGE-DeSTpruas_182023-11-26Developing
NameT # Ann.AuthorMaintainerUpdated_atStatus

201-220 / 238 show all
Glycosmos6-GlycoEpitope 19.9 KJin-Dong Kim2023-11-28Developing
GlyCosmos6-UBERON 689 KJin-Dong Kim2023-12-15Developing
PA-LLM 0Nico Colic2024-01-19Developing
GlyCosmos6-Glycan-Motif-Structure 107 KJin-Dong Kim2023-11-24Developing
PA-LLM-test 0Nico Colic2024-01-19Testing
NCBITAXON 502 KJin-Dong Kim2023-11-24Developing
Inflammaging 23.4 Malo332023-11-24Released
MyTest 9.81 MJin-Dong Kim2023-11-24Testing
Allie 8.7 MDatabase Center for Life ScienceYasunori Yamamoto2023-11-24Developing
LitCovid-sentences 5.63 MJin-Dong Kim2023-11-24Developing
CORD-19_Custom_license_subset 5.08 MJin-Dong Kim2023-11-24Released
PubCasesHPO 3.18 MToyofumi Fujiwara2023-11-24Beta
CORD-19-PD-UBERON 1.42 MJin-Dong Kim2023-11-24Released
Epistemic_Statements 1.42 Mmboguslav2023-11-24Developing
biomarkers 857 Kalo332023-11-24
Covid19_manual_annotation_v2 4.58 KAikoHIRAKI2023-11-24Developing
PubMed-German-test 0Jin-Dong Kim2023-11-24Developing
PubMed-2017 0Jin-Dong Kim2023-11-24Developing
speech-test 6Jin-Dong Kim2023-11-26Testing
ENG_NER_NEL 493LASIGE-DeSTpruas_182023-11-26Developing