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NameT Description# Ann.AuthorMaintainerUpdated_atStatus

1-20 / 338 show all
bc2gn_test test02021-07-13Testing
BioASQ-sample collection of PubMed articles which appear in the BioASQ sample data set.0BioASQJin-Dong Kim2023-11-28Testing
pubtator-sample Sample annotation of PubTator produced by Zhiyong Lu et al.28Zhiyong LuJin-Dong Kim2023-11-27Testing
LitCovid-sample-PD-MAT 251Jin-Dong Kim2023-11-29Developing
BLAH2015_Annotations_Adderall 0nestoralvaronestoralvaro2023-11-29Testing
SPECIES800_autotagged This project comprises the SPECIES800 corpus documents automatically annotated by the Jensenlab tagger. Annotated entity types are: Genes/proteins from the mentioned organisms (and any human ones) PubChem Compound identifiers NCBI Taxonomy entries Gene Ontology cellular component terms BRENDA Tissue Ontology terms Disease Ontology terms Environment Ontology terms The SPECIES 800 (S800) comprises 800 PubMed abstracts. In its original form species mentions were manually identified and mapped to the corresponding NCBI Taxonomy identifiers. Described in: The SPECIES and ORGANISMS Resources for Fast and Accurate Identification of Taxonomic Names in Text. Pafilis E, Frankild SP, Fanini L, Faulwetter S, Pavloudi C, et al. (2013). PLoS ONE, 2013, 8(6): e65390. doi:10.1371/journal.pone.0065390. The manually annotated corpus is also available as a PubAnnotation project (see here). 0Evangelos Pafilis, Sampo Pyysalo, Lars Juhl Jensenevangelos2015-11-20Testing
GlycoBiology-PACDB cGGDB-based annotation to GlycoBiology abstracts3.03 KToshihide Shikanaishikanai2023-11-27Testing
GlycoBiology-cGGDB cGGDB-based annotation to GlycoBiology abstracts36Toshihide Shikanaishikanai2023-11-28Testing
GlycoBiology-FMA FMA ontology-based annotation to GlycoBiology abstracts96.3 KJin-Dong Kim2023-11-29Testing
relna https://www.tagtog.net/jmcejuela/relna2.77 KAshish Baghudana and Juan Miguel Cejuelatagtog2023-11-29Developing
AGCA_Sue Active Gene Annotation Corpus for the Application in Drug Repurposing Discovery0Jingbo Xia, Xuan Qin, Kaiyin Zhou2023-11-29Developing
silkworm 9.87 KMasakazu SAGA2023-11-29Testing
UCDIT_TEST colitis link91.6 Kalo332023-11-27Testing
IMDB-NLP Annotations for chunking and semantic role labeling based on in-memory databases.02016-05-06Uploading
uniprot-mouse Protein annotation based on UniProt11.5 KJin-Dong Kim2023-11-28Developing
GlycoBiology-GDGDB GDGDB-based annotation to GlycoBiology abstracts 2.46 KToshihide Shikanaishikanai2023-11-29Testing
PT_NER_NEL Annotations in Portuguese COVID-19 related abstracts from MeSH terminology245LASIGE-DeSTpruas_182023-11-29Developing
0mytest 144Yue Wang2023-11-29
LitCovid-sample-Glycan 3.21 KJin-Dong Kim2023-11-29Testing
LitCoin-training-merged 14.8 KJin-Dong Kim2023-11-24
NameT # Ann.AuthorMaintainerUpdated_atStatus

1-20 / 338 show all
bc2gn_test 02021-07-13Testing
BioASQ-sample 0BioASQJin-Dong Kim2023-11-28Testing
pubtator-sample 28Zhiyong LuJin-Dong Kim2023-11-27Testing
LitCovid-sample-PD-MAT 251Jin-Dong Kim2023-11-29Developing
BLAH2015_Annotations_Adderall 0nestoralvaronestoralvaro2023-11-29Testing
SPECIES800_autotagged 0Evangelos Pafilis, Sampo Pyysalo, Lars Juhl Jensenevangelos2015-11-20Testing
GlycoBiology-PACDB 3.03 KToshihide Shikanaishikanai2023-11-27Testing
GlycoBiology-cGGDB 36Toshihide Shikanaishikanai2023-11-28Testing
GlycoBiology-FMA 96.3 KJin-Dong Kim2023-11-29Testing
relna 2.77 KAshish Baghudana and Juan Miguel Cejuelatagtog2023-11-29Developing
AGCA_Sue 0Jingbo Xia, Xuan Qin, Kaiyin Zhou2023-11-29Developing
silkworm 9.87 KMasakazu SAGA2023-11-29Testing
UCDIT_TEST 91.6 Kalo332023-11-27Testing
IMDB-NLP 02016-05-06Uploading
uniprot-mouse 11.5 KJin-Dong Kim2023-11-28Developing
GlycoBiology-GDGDB 2.46 KToshihide Shikanaishikanai2023-11-29Testing
PT_NER_NEL 245LASIGE-DeSTpruas_182023-11-29Developing
0mytest 144Yue Wang2023-11-29
LitCovid-sample-Glycan 3.21 KJin-Dong Kim2023-11-29Testing
LitCoin-training-merged 14.8 KJin-Dong Kim2023-11-24