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NameTDescription# Ann. AuthorMaintainerUpdated_atStatus

1-20 / 218 show all
Grays_part1_test 0Jin-Dong Kim2019-09-03Testing
AlvisNLP-Async-Test Test for the asynchronous AlvisNLP/ML annotator family.0Robert Bossyrbossy2017-04-07Testing
LitCovid-docs-s 0Jin-Dong Kim2021-10-18Released
GlyCosmos600-docs A random collection of 600 PubMed abstracts from 6 glycobiology-related journals: Glycobiology, Glycoconjugate journal, The Journal of biological chemistry, Journal of proteome research, Journal of proteomics, and Carbohydrate research. The whole PMIDs were collected on June 11, 2019. From each journal, 100 PMIDs were randomly sampled.0Jin-Dong Kim2019-06-11Released
PubCasesCollection abstracts in PubCases0Jin-Dong Kim2017-09-08
GlycoConjugate-collection The PubMed entries (titles and abstracts) from the journal of GlycoConjugate0Jin-Dong Kim2018-02-09Developing
PubMed-2000 abstracts published in 2000.0Jin-Dong Kim2017-09-01Developing
GlyCosmos600-GlycoGene3 0angata2021-10-01Testing
bc2gn_test test02021-07-13Testing
pubmed-2016 abstracts published in 20160Jin-Dong Kim2017-09-03
BioASQ-sample collection of PubMed articles which appear in the BioASQ sample data set.0BioASQJin-Dong Kim2015-10-13Testing
PubMed-2017 abstracts published in 2017.0Jin-Dong Kim2017-09-01Developing
AGCA_Sue Active Gene Annotation Corpus for the Application in Drug Repurposing Discovery0Jingbo Xia, Xuan Qin, Kaiyin Zhou2017-11-13Developing
Molecular_Biology 0Sophie Nam2021-11-18
SPECIES800_autotagged This project comprises the SPECIES800 corpus documents automatically annotated by the Jensenlab tagger. Annotated entity types are: Genes/proteins from the mentioned organisms (and any human ones) PubChem Compound identifiers NCBI Taxonomy entries Gene Ontology cellular component terms BRENDA Tissue Ontology terms Disease Ontology terms Environment Ontology terms The SPECIES 800 (S800) comprises 800 PubMed abstracts. In its original form species mentions were manually identified and mapped to the corresponding NCBI Taxonomy identifiers. Described in: The SPECIES and ORGANISMS Resources for Fast and Accurate Identification of Taxonomic Names in Text. Pafilis E, Frankild SP, Fanini L, Faulwetter S, Pavloudi C, et al. (2013). PLoS ONE, 2013, 8(6): e65390. doi:10.1371/journal.pone.0065390. The manually annotated corpus is also available as a PubAnnotation project (see here). 0Evangelos Pafilis, Sampo Pyysalo, Lars Juhl Jensenevangelos2015-11-20Testing
Test-Documents 0Jin-Dong Kim2021-12-23
BLAH2015_Annotations_Adderall 0nestoralvaronestoralvaro2015-03-15Testing
GlycoBiology-GO GO-based annotation to GlycoBiology abstracts0Jin-Dong Kim2016-06-11Testing
IMDB-NLP Annotations for chunking and semantic role labeling based on in-memory databases.02016-05-06Uploading
SMAFIRA_Methods Predictions for methods for the SMAFIRA project.0zebet2021-01-27Developing
NameT# Ann. AuthorMaintainerUpdated_atStatus

1-20 / 218 show all
Grays_part1_test 0Jin-Dong Kim2019-09-03Testing
AlvisNLP-Async-Test 0Robert Bossyrbossy2017-04-07Testing
LitCovid-docs-s 0Jin-Dong Kim2021-10-18Released
GlyCosmos600-docs 0Jin-Dong Kim2019-06-11Released
PubCasesCollection 0Jin-Dong Kim2017-09-08
GlycoConjugate-collection 0Jin-Dong Kim2018-02-09Developing
PubMed-2000 0Jin-Dong Kim2017-09-01Developing
GlyCosmos600-GlycoGene3 0angata2021-10-01Testing
bc2gn_test 02021-07-13Testing
pubmed-2016 0Jin-Dong Kim2017-09-03
BioASQ-sample 0BioASQJin-Dong Kim2015-10-13Testing
PubMed-2017 0Jin-Dong Kim2017-09-01Developing
AGCA_Sue 0Jingbo Xia, Xuan Qin, Kaiyin Zhou2017-11-13Developing
Molecular_Biology 0Sophie Nam2021-11-18
SPECIES800_autotagged 0Evangelos Pafilis, Sampo Pyysalo, Lars Juhl Jensenevangelos2015-11-20Testing
Test-Documents 0Jin-Dong Kim2021-12-23
BLAH2015_Annotations_Adderall 0nestoralvaronestoralvaro2015-03-15Testing
GlycoBiology-GO 0Jin-Dong Kim2016-06-11Testing
IMDB-NLP 02016-05-06Uploading
SMAFIRA_Methods 0zebet2021-01-27Developing