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NameTDescription# Ann.Author MaintainerUpdated_atStatus

181-200 / 238 show all
Test-merged-2 3.51 Kadmin2023-11-29
Test-GeneOrGeneProduct 1.17 KJin-Dong Kim2023-11-29
CORD-19-sample-FMA-UBERON 61Jin-Dong Kim2023-11-29Developing
LitCovid-sample-Enju 13.1 KJin-Dong Kim2023-11-29Developing
LitCovid-sample-UniProt 1.25 KJin-Dong Kim2023-11-30Testing
performance-test a project for performance test480 KJin-Dong Kim2023-11-27Testing
NEUROSES This corpus is composed of PubMed articles containing cognitive enhancers and anti-depressants drug mentions. The selected sentences are automatically annotated using the NCBO Annotator with the Chemical Entities of Biological Interest (CHEBI) and Phenotypic Quality Ontology (PATO) ontologies, we also produced annotations using PhenoMiner ontology via a dictionary-based tagger.2.14 Mnestoralvaro2023-11-24Beta
Preeclampsia A collection of titles and abstracts of "Preeclampsia"-related papers. They were extracted from PubMed using the MeSH term "Preeclampsia" and specifying the language to be "English, on 11th September, 2017. The texts were then annotated by PubDictionaries using the dictionary "Preeclampsia".58.7 Kcallahan_tiff2023-11-29Developing
LitCovid-PD-GO-BP Terms for biological prosesses, as defined in GO374 KJin-Dong Kim2023-11-29Developing
relna https://www.tagtog.net/jmcejuela/relna2.77 KAshish Baghudana and Juan Miguel Cejuelatagtog2023-11-29Developing
BioASQ-sample collection of PubMed articles which appear in the BioASQ sample data set.0BioASQJin-Dong Kim2023-11-28Testing
FSU-PRGE A new broad-coverage corpus composed of 3,306 MEDLINE abstracts dealing with gene and protein mentions. The annotation process was semi-automatic. Publication: http://aclweb.org/anthology/W/W10/W10-1838.pdf59.5 KCALBC ProjectYue Wang2023-11-26Released
Allie An annotation set of abbreviations and expanded forms extracted from PubMed/MEDLINE by machines.8.7 MDatabase Center for Life ScienceYasunori Yamamoto2023-11-24Developing
ICD10 Annotation for disease names as defined in ICD101.6 KDBCLSJin-Dong Kim2023-11-29Developing
bionlp-st-ge-2016-uniprot UniProt protein annotation to the benchmark data set of BioNLP-ST 2016 GE task: reference data set (bionlp-st-ge-2016-reference) and test data set (bionlp-st-ge-2016-test). The annotations are produced based on a dictionary which is semi-automatically compiled for the 34 full paper articles included in the benchmark data set (20 in the reference data set + 14 in the test data set). For detailed information about BioNLP-ST GE 2016 task data sets, please refer to the benchmark reference data set (bionlp-st-ge-2016-reference) and benchmark test data set (bionlp-st-ge-2016-test). 16.2 KDBCLSJin-Dong Kim2023-11-29Beta
sentences Sentence segmentation annotation. Automatic annotation by TextSentencer.6.96 MDBCLSJin-Dong Kim2023-11-24Developing
pmc-enju-pas Predicate-argument structure annotation produced by Enju. This data set is initially produced as a supporting resource for BioNLP-ST 2016 GE task. As so, it currently includes the 34 full paper articles that are in the benchmark data sets of GE 2016 task, reference data set (bionlp-st-ge-2016-reference) and test data set (bionlp-st-ge-2016-test), but will be extended to include more papers from the PubMed Central Open Access subset (PMCOA). 205 KDBCLSJin-Dong Kim2023-11-28Developing
UBERON-AE Annotation for anatomical entities based on the "Anatomical Entity" subtree of UBERON ontology. Annotations are automatically produced using PubDictionaries with threshold: 0.85.859 KDBCLSJin-Dong Kim2023-11-29Developing
ENG_RE Entities and relations annotations from the following ontologies: Disease Ontology ('DO'), Gene Ontology ('GO'), Human Phenotype Ontology ('HPO'), and ChEBI ontology ('CHEBI').224Diana Sousadpavot2023-11-29Developing
pubmed-enju-pas Annotating PubMed abstracts for predicate-argument structure (PAS). Enju 2.4.2 is used to automatically compute PAS.19.1 MEnjuJin-Dong Kim2023-11-24Developing
NameT# Ann.Author MaintainerUpdated_atStatus

181-200 / 238 show all
Test-merged-2 3.51 Kadmin2023-11-29
Test-GeneOrGeneProduct 1.17 KJin-Dong Kim2023-11-29
CORD-19-sample-FMA-UBERON 61Jin-Dong Kim2023-11-29Developing
LitCovid-sample-Enju 13.1 KJin-Dong Kim2023-11-29Developing
LitCovid-sample-UniProt 1.25 KJin-Dong Kim2023-11-30Testing
performance-test 480 KJin-Dong Kim2023-11-27Testing
NEUROSES 2.14 Mnestoralvaro2023-11-24Beta
Preeclampsia 58.7 Kcallahan_tiff2023-11-29Developing
LitCovid-PD-GO-BP 374 KJin-Dong Kim2023-11-29Developing
relna 2.77 KAshish Baghudana and Juan Miguel Cejuelatagtog2023-11-29Developing
BioASQ-sample 0BioASQJin-Dong Kim2023-11-28Testing
FSU-PRGE 59.5 KCALBC ProjectYue Wang2023-11-26Released
Allie 8.7 MDatabase Center for Life ScienceYasunori Yamamoto2023-11-24Developing
ICD10 1.6 KDBCLSJin-Dong Kim2023-11-29Developing
bionlp-st-ge-2016-uniprot 16.2 KDBCLSJin-Dong Kim2023-11-29Beta
sentences 6.96 MDBCLSJin-Dong Kim2023-11-24Developing
pmc-enju-pas 205 KDBCLSJin-Dong Kim2023-11-28Developing
UBERON-AE 859 KDBCLSJin-Dong Kim2023-11-29Developing
ENG_RE 224Diana Sousadpavot2023-11-29Developing
pubmed-enju-pas 19.1 MEnjuJin-Dong Kim2023-11-24Developing