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PMC:441373 / 5005-6226 JSONTXT 4 Projects

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Id Subject Object Predicate Lexical cue
T1606 0-8 NN denotes Sequence
T1607 9-19 NN denotes similarity
T1608 20-28 NNS denotes searches
T1610 29-31 IN denotes of
T1611 32-35 DT denotes the
T1613 36-44 RB denotes publicly
T1614 45-54 JJ denotes available
T1615 55-61 NN denotes genome
T1612 62-71 NNS denotes databases
T1616 72-76 IN denotes with
T1617 77-80 DT denotes the
T1619 81-86 NN denotes BLAST
T1620 87-90 CC denotes and
T1621 91-97 NN denotes TBLAST
T1618 98-106 NNS denotes programs
T1622 107-111 VBD denotes were
T1609 112-121 VBN denotes performed
T1623 122-124 TO denotes to
T1624 125-133 VB denotes identify
T1625 134-138 NN denotes TACC
T1627 139-142 CC denotes and
T1628 143-148 NN denotes RHAMM
T1626 149-160 NNS denotes orthologues
T1629 160-162 , denotes ,
T1630 162-165 CC denotes and
T1631 166-171 JJ denotes other
T1632 172-179 NNS denotes members
T1633 180-182 IN denotes of
T1634 183-186 DT denotes the
T1636 187-193 VBN denotes coiled
T1637 194-198 NN denotes coil
T1635 199-210 NN denotes superfamily
T1638 211-213 IN denotes in
T1639 214-215 DT denotes a
T1641 216-223 JJ denotes diverse
T1640 224-227 NN denotes set
T1642 228-230 IN denotes of
T1643 231-238 NNS denotes species
T1644 239-240 -LRB- denotes (
T1645 240-244 NN denotes Fig.
T1646 245-246 CD denotes 1
T1647 246-247 -RRB- denotes )
T1648 247-248 . denotes .
T1649 248-371 sentence denotes This identified the complete sequence of the TACC genes in representatives of five major phylogenetically distinct clades.
T1650 249-253 DT denotes This
T1651 254-264 VBD denotes identified
T1652 265-268 DT denotes the
T1654 269-277 JJ denotes complete
T1653 278-286 NN denotes sequence
T1655 287-289 IN denotes of
T1656 290-293 DT denotes the
T1658 294-298 NN denotes TACC
T1657 299-304 NNS denotes genes
T1659 305-307 IN denotes in
T1660 308-323 NNS denotes representatives
T1661 324-326 IN denotes of
T1662 327-331 CD denotes five
T1664 332-337 JJ denotes major
T1665 338-354 RB denotes phylogenetically
T1666 355-363 JJ denotes distinct
T1663 364-370 NNS denotes clades
T1667 370-371 . denotes .
T1668 371-505 sentence denotes Where possible, the construction of the TACC sequences from these organisms was also confirmed by the analysis of the cDNA databases.
T1669 372-377 WRB denotes Where
T1670 378-386 JJ denotes possible
T1672 386-388 , denotes ,
T1673 388-391 DT denotes the
T1674 392-404 NN denotes construction
T1675 405-407 IN denotes of
T1676 408-411 DT denotes the
T1678 412-416 NN denotes TACC
T1677 417-426 NNS denotes sequences
T1679 427-431 IN denotes from
T1680 432-437 DT denotes these
T1681 438-447 NNS denotes organisms
T1682 448-451 VBD denotes was
T1683 452-456 RB denotes also
T1671 457-466 VBN denotes confirmed
T1684 467-469 IN denotes by
T1685 470-473 DT denotes the
T1686 474-482 NN denotes analysis
T1687 483-485 IN denotes of
T1688 486-489 DT denotes the
T1690 490-494 NN denotes cDNA
T1689 495-504 NNS denotes databases
T1691 504-505 . denotes .
T1692 505-749 sentence denotes Several partial sequences in other vertebrate species, the echinodermate Strongylocentrotus purpuratus and the protostome insect Anopheles gambiae were also identified, suggesting an ancient conservation of the TACC genes in metazoan lineages.
T1693 506-513 JJ denotes Several
T1695 514-521 JJ denotes partial
T1694 522-531 NNS denotes sequences
T1697 532-534 IN denotes in
T1698 535-540 JJ denotes other
T1700 541-551 NN denotes vertebrate
T1699 552-559 NNS denotes species
T1701 559-561 , denotes ,
T1702 561-564 DT denotes the
T1703 565-578 JJ denotes echinodermate
T1704 579-597 NNP denotes Strongylocentrotus
T1705 598-608 NNP denotes purpuratus
T1706 609-612 CC denotes and
T1707 613-616 DT denotes the
T1709 617-627 NN denotes protostome
T1708 628-634 NN denotes insect
T1710 635-644 NNP denotes Anopheles
T1711 645-652 NNP denotes gambiae
T1712 653-657 VBD denotes were
T1713 658-662 RB denotes also
T1696 663-673 VBN denotes identified
T1714 673-675 , denotes ,
T1715 675-685 VBG denotes suggesting
T1716 686-688 DT denotes an
T1718 689-696 JJ denotes ancient
T1717 697-709 NN denotes conservation
T1719 710-712 IN denotes of
T1720 713-716 DT denotes the
T1722 717-721 NN denotes TACC
T1721 722-727 NNS denotes genes
T1723 728-730 IN denotes in
T1724 731-739 NN denotes metazoan
T1725 740-748 NNS denotes lineages
T1726 748-749 . denotes .
T1727 749-913 sentence denotes However, due to the relative infancy of the cDNA/genome projects for these latter organisms, complete characterization of these TACC genes could not be undertaken.
T1728 750-757 RB denotes However
T1730 757-759 , denotes ,
T1731 759-762 IN denotes due
T1732 763-765 IN denotes to
T1733 766-769 DT denotes the
T1735 770-778 JJ denotes relative
T1734 779-786 NN denotes infancy
T1736 787-789 IN denotes of
T1737 790-793 DT denotes the
T1739 794-798 NN denotes cDNA
T1741 798-799 HYPH denotes /
T1740 799-805 NN denotes genome
T1738 806-814 NNS denotes projects
T1742 815-818 IN denotes for
T1743 819-824 DT denotes these
T1745 825-831 JJ denotes latter
T1744 832-841 NNS denotes organisms
T1746 841-843 , denotes ,
T1747 843-851 JJ denotes complete
T1748 852-868 NN denotes characterization
T1749 869-871 IN denotes of
T1750 872-877 DT denotes these
T1752 878-882 NN denotes TACC
T1751 883-888 NNS denotes genes
T1753 889-894 MD denotes could
T1754 895-898 RB denotes not
T1755 899-901 VB denotes be
T1729 902-912 VBN denotes undertaken
T1756 912-913 . denotes .
T1757 913-1221 sentence denotes No conclusion could be made about the existence of TACC-like sequence in non-bilaterian metazoans, such as Cnidaria or Porifera, due to the paucity of sequence information for these organisms, and additional definitive sequences with a defined TACC domain could not be found in other non-metazoan organisms.
T1758 914-916 DT denotes No
T1759 917-927 NN denotes conclusion
T1761 928-933 MD denotes could
T1762 934-936 VB denotes be
T1760 937-941 VBN denotes made
T1763 942-947 IN denotes about
T1764 948-951 DT denotes the
T1765 952-961 NN denotes existence
T1766 962-964 IN denotes of
T1767 965-969 NN denotes TACC
T1769 969-970 HYPH denotes -
T1768 970-974 JJ denotes like
T1770 975-983 NN denotes sequence
T1771 984-986 IN denotes in
T1772 987-1001 JJ denotes non-bilaterian
T1773 1002-1011 NNS denotes metazoans
T1774 1011-1013 , denotes ,
T1775 1013-1017 JJ denotes such
T1776 1018-1020 IN denotes as
T1777 1021-1029 NNP denotes Cnidaria
T1778 1030-1032 CC denotes or
T1779 1033-1041 NNP denotes Porifera
T1780 1041-1043 , denotes ,
T1781 1043-1046 IN denotes due
T1782 1047-1049 IN denotes to
T1783 1050-1053 DT denotes the
T1784 1054-1061 NN denotes paucity
T1785 1062-1064 IN denotes of
T1786 1065-1073 NN denotes sequence
T1787 1074-1085 NN denotes information
T1788 1086-1089 IN denotes for
T1789 1090-1095 DT denotes these
T1790 1096-1105 NNS denotes organisms
T1791 1105-1107 , denotes ,
T1792 1107-1110 CC denotes and
T1793 1111-1121 JJ denotes additional
T1795 1122-1132 JJ denotes definitive
T1794 1133-1142 NNS denotes sequences
T1797 1143-1147 IN denotes with
T1798 1148-1149 DT denotes a
T1800 1150-1157 VBN denotes defined
T1801 1158-1162 NN denotes TACC
T1799 1163-1169 NN denotes domain
T1802 1170-1175 MD denotes could
T1803 1176-1179 RB denotes not
T1804 1180-1182 VB denotes be
T1796 1183-1188 VBN denotes found
T1805 1189-1191 IN denotes in
T1806 1192-1197 JJ denotes other
T1808 1198-1210 JJ denotes non-metazoan
T1807 1211-1220 NNS denotes organisms
T1809 1220-1221 . denotes .
R1000 T1795 T1794 amod definitive,sequences
R1001 T1796 T1760 conj found,made
R1002 T1797 T1794 prep with,sequences
R1003 T1798 T1799 det a,domain
R1004 T1799 T1797 pobj domain,with
R1005 T1800 T1799 amod defined,domain
R1006 T1801 T1799 compound TACC,domain
R1007 T1802 T1796 aux could,found
R1008 T1803 T1796 neg not,found
R1009 T1804 T1796 auxpass be,found
R1010 T1805 T1796 prep in,found
R1011 T1806 T1807 amod other,organisms
R1012 T1807 T1805 pobj organisms,in
R1013 T1808 T1807 amod non-metazoan,organisms
R1014 T1809 T1796 punct .,found
R822 T1606 T1607 compound Sequence,similarity
R823 T1607 T1608 compound similarity,searches
R824 T1608 T1609 nsubjpass searches,performed
R825 T1610 T1608 prep of,searches
R826 T1611 T1612 det the,databases
R827 T1612 T1610 pobj databases,of
R828 T1613 T1614 advmod publicly,available
R829 T1614 T1612 amod available,databases
R830 T1615 T1612 compound genome,databases
R831 T1616 T1612 prep with,databases
R832 T1617 T1618 det the,programs
R833 T1618 T1616 pobj programs,with
R834 T1619 T1618 nmod BLAST,programs
R835 T1620 T1619 cc and,BLAST
R836 T1621 T1619 conj TBLAST,BLAST
R837 T1622 T1609 auxpass were,performed
R838 T1623 T1624 aux to,identify
R839 T1624 T1609 advcl identify,performed
R840 T1625 T1626 nmod TACC,orthologues
R841 T1626 T1624 dobj orthologues,identify
R842 T1627 T1625 cc and,TACC
R843 T1628 T1625 conj RHAMM,TACC
R844 T1629 T1626 punct ", ",orthologues
R845 T1630 T1626 cc and,orthologues
R846 T1631 T1632 amod other,members
R847 T1632 T1626 conj members,orthologues
R848 T1633 T1632 prep of,members
R849 T1634 T1635 det the,superfamily
R850 T1635 T1633 pobj superfamily,of
R851 T1636 T1637 amod coiled,coil
R852 T1637 T1635 compound coil,superfamily
R853 T1638 T1624 prep in,identify
R854 T1639 T1640 det a,set
R855 T1640 T1638 pobj set,in
R856 T1641 T1640 amod diverse,set
R857 T1642 T1640 prep of,set
R858 T1643 T1642 pobj species,of
R859 T1644 T1645 punct (,Fig.
R860 T1645 T1624 parataxis Fig.,identify
R861 T1646 T1645 nummod 1,Fig.
R862 T1647 T1645 punct ),Fig.
R863 T1648 T1609 punct .,performed
R864 T1650 T1651 nsubj This,identified
R865 T1652 T1653 det the,sequence
R866 T1653 T1651 dobj sequence,identified
R867 T1654 T1653 amod complete,sequence
R868 T1655 T1653 prep of,sequence
R869 T1656 T1657 det the,genes
R870 T1657 T1655 pobj genes,of
R871 T1658 T1657 compound TACC,genes
R872 T1659 T1651 prep in,identified
R873 T1660 T1659 pobj representatives,in
R874 T1661 T1660 prep of,representatives
R875 T1662 T1663 nummod five,clades
R876 T1663 T1661 pobj clades,of
R877 T1664 T1663 amod major,clades
R878 T1665 T1666 advmod phylogenetically,distinct
R879 T1666 T1663 amod distinct,clades
R880 T1667 T1651 punct .,identified
R881 T1669 T1670 advmod Where,possible
R882 T1670 T1671 advcl possible,confirmed
R883 T1672 T1671 punct ", ",confirmed
R884 T1673 T1674 det the,construction
R885 T1674 T1671 nsubjpass construction,confirmed
R886 T1675 T1674 prep of,construction
R887 T1676 T1677 det the,sequences
R888 T1677 T1675 pobj sequences,of
R889 T1678 T1677 compound TACC,sequences
R890 T1679 T1677 prep from,sequences
R891 T1680 T1681 det these,organisms
R892 T1681 T1679 pobj organisms,from
R893 T1682 T1671 auxpass was,confirmed
R894 T1683 T1671 advmod also,confirmed
R895 T1684 T1671 agent by,confirmed
R896 T1685 T1686 det the,analysis
R897 T1686 T1684 pobj analysis,by
R898 T1687 T1686 prep of,analysis
R899 T1688 T1689 det the,databases
R900 T1689 T1687 pobj databases,of
R901 T1690 T1689 compound cDNA,databases
R902 T1691 T1671 punct .,confirmed
R903 T1693 T1694 amod Several,sequences
R904 T1694 T1696 nsubjpass sequences,identified
R905 T1695 T1694 amod partial,sequences
R906 T1697 T1694 prep in,sequences
R907 T1698 T1699 amod other,species
R908 T1699 T1697 pobj species,in
R909 T1700 T1699 compound vertebrate,species
R910 T1701 T1699 punct ", ",species
R911 T1702 T1703 det the,echinodermate
R912 T1703 T1699 appos echinodermate,species
R913 T1704 T1705 compound Strongylocentrotus,purpuratus
R914 T1705 T1703 appos purpuratus,echinodermate
R915 T1706 T1703 cc and,echinodermate
R916 T1707 T1708 det the,insect
R917 T1708 T1703 conj insect,echinodermate
R918 T1709 T1708 compound protostome,insect
R919 T1710 T1711 compound Anopheles,gambiae
R920 T1711 T1708 appos gambiae,insect
R921 T1712 T1696 auxpass were,identified
R922 T1713 T1696 advmod also,identified
R923 T1714 T1696 punct ", ",identified
R924 T1715 T1696 advcl suggesting,identified
R925 T1716 T1717 det an,conservation
R926 T1717 T1715 dobj conservation,suggesting
R927 T1718 T1717 amod ancient,conservation
R928 T1719 T1717 prep of,conservation
R929 T1720 T1721 det the,genes
R930 T1721 T1719 pobj genes,of
R931 T1722 T1721 compound TACC,genes
R932 T1723 T1717 prep in,conservation
R933 T1724 T1725 compound metazoan,lineages
R934 T1725 T1723 pobj lineages,in
R935 T1726 T1696 punct .,identified
R936 T1728 T1729 advmod However,undertaken
R937 T1730 T1729 punct ", ",undertaken
R938 T1731 T1729 prep due,undertaken
R939 T1732 T1731 pcomp to,due
R940 T1733 T1734 det the,infancy
R941 T1734 T1731 pobj infancy,due
R942 T1735 T1734 amod relative,infancy
R943 T1736 T1734 prep of,infancy
R944 T1737 T1738 det the,projects
R945 T1738 T1736 pobj projects,of
R946 T1739 T1740 compound cDNA,genome
R947 T1740 T1738 compound genome,projects
R948 T1741 T1740 punct /,genome
R949 T1742 T1738 prep for,projects
R950 T1743 T1744 det these,organisms
R951 T1744 T1742 pobj organisms,for
R952 T1745 T1744 amod latter,organisms
R953 T1746 T1729 punct ", ",undertaken
R954 T1747 T1748 amod complete,characterization
R955 T1748 T1729 nsubjpass characterization,undertaken
R956 T1749 T1748 prep of,characterization
R957 T1750 T1751 det these,genes
R958 T1751 T1749 pobj genes,of
R959 T1752 T1751 compound TACC,genes
R960 T1753 T1729 aux could,undertaken
R961 T1754 T1729 neg not,undertaken
R962 T1755 T1729 auxpass be,undertaken
R963 T1756 T1729 punct .,undertaken
R964 T1758 T1759 det No,conclusion
R965 T1759 T1760 nsubjpass conclusion,made
R966 T1761 T1760 aux could,made
R967 T1762 T1760 auxpass be,made
R968 T1763 T1760 prep about,made
R969 T1764 T1765 det the,existence
R970 T1765 T1763 pobj existence,about
R971 T1766 T1765 prep of,existence
R972 T1767 T1768 npadvmod TACC,like
R973 T1768 T1770 amod like,sequence
R974 T1769 T1768 punct -,like
R975 T1770 T1766 pobj sequence,of
R976 T1771 T1765 prep in,existence
R977 T1772 T1773 amod non-bilaterian,metazoans
R978 T1773 T1771 pobj metazoans,in
R979 T1774 T1773 punct ", ",metazoans
R980 T1775 T1776 amod such,as
R981 T1776 T1773 prep as,metazoans
R982 T1777 T1776 pobj Cnidaria,as
R983 T1778 T1777 cc or,Cnidaria
R984 T1779 T1777 conj Porifera,Cnidaria
R985 T1780 T1760 punct ", ",made
R986 T1781 T1760 prep due,made
R987 T1782 T1781 pcomp to,due
R988 T1783 T1784 det the,paucity
R989 T1784 T1781 pobj paucity,due
R990 T1785 T1784 prep of,paucity
R991 T1786 T1787 compound sequence,information
R992 T1787 T1785 pobj information,of
R993 T1788 T1787 prep for,information
R994 T1789 T1790 det these,organisms
R995 T1790 T1788 pobj organisms,for
R996 T1791 T1760 punct ", ",made
R997 T1792 T1760 cc and,made
R998 T1793 T1794 amod additional,sequences
R999 T1794 T1796 nsubjpass sequences,found