PMC:1540739 / 12705-13752 JSONTXT 4 Projects

Annnotations TAB TSV DIC JSON TextAE

Id Subject Object Predicate Lexical cue
T8074 0-5 NNS denotes Cells
T8076 5-7 , denotes ,
T8077 7-16 JJ denotes untreated
T8078 17-19 CC denotes or
T8079 20-27 VBN denotes treated
T8080 28-31 IN denotes for
T8081 32-34 CD denotes 24
T8082 35-36 NN denotes h
T8083 37-41 IN denotes with
T8084 42-45 CD denotes 0.5
T8085 46-48 NN denotes μg
T8087 48-49 SYM denotes /
T8088 49-51 NN denotes ml
T8086 52-62 NN denotes adriamycin
T8089 62-64 , denotes ,
T8090 64-68 VBD denotes were
T8075 69-74 VBN denotes lysed
T8091 75-77 IN denotes on
T8092 78-81 DT denotes the
T8093 82-86 NN denotes dish
T8094 87-89 IN denotes in
T8095 90-91 DT denotes a
T8096 92-98 NN denotes buffer
T8097 99-109 VBG denotes consisting
T8098 110-112 IN denotes of
T8099 113-115 CD denotes 50
T8100 116-118 NN denotes mM
T8101 119-123 NN denotes Tris
T8102 124-125 -LRB- denotes (
T8103 125-127 NN denotes pH
T8104 128-131 CD denotes 8.0
T8105 131-132 -RRB- denotes )
T8106 132-134 , denotes ,
T8107 134-135 CD denotes 5
T8108 136-138 NN denotes mM
T8109 139-143 NN denotes EDTA
T8110 143-145 , denotes ,
T8111 145-148 CD denotes 150
T8112 149-151 NN denotes mM
T8113 152-156 NN denotes NaCl
T8114 156-158 , denotes ,
T8115 158-161 CD denotes 0.5
T8116 161-162 NN denotes %
T8118 163-170 NN denotes Nonidet
T8119 171-172 NN denotes P
T8120 172-173 HYPH denotes -
T8117 173-175 NN denotes 40
T8121 175-177 , denotes ,
T8122 177-178 CD denotes 1
T8123 179-181 NN denotes mM
T8124 182-186 NN denotes PMSF
T8125 186-188 , denotes ,
T8126 188-189 CD denotes 1
T8127 190-192 NN denotes mM
T8129 193-199 NN denotes sodium
T8128 200-208 NN denotes vanadate
T8130 208-210 , denotes ,
T8131 210-212 CD denotes 10
T8132 213-215 NN denotes mM
T8133 216-219 NNP denotes NaF
T8134 220-223 CC denotes and
T8135 224-232 NN denotes Complete
T8136 233-237 NN denotes Mini
T8138 238-246 NN denotes Protease
T8137 247-257 NNS denotes Inhibitors
T8139 258-259 -LRB- denotes (
T8141 259-264 NNP denotes Roche
T8140 265-276 NNP denotes Diagnostics
T8142 276-277 -RRB- denotes )
T8143 278-280 IN denotes at
T8144 281-282 CD denotes 4
T8145 282-284 NNS denotes °C
T8146 285-288 IN denotes for
T8147 289-291 CD denotes 30
T8148 292-295 NN denotes min
T8149 295-296 . denotes .
T8150 296-358 sentence denotes Lysates were scraped, then spun at 6000× g at 4°C for 10 min.
T8151 297-304 NNS denotes Lysates
T8153 305-309 VBD denotes were
T8152 310-317 VBN denotes scraped
T8154 317-319 , denotes ,
T8155 319-323 RB denotes then
T8156 324-328 VBN denotes spun
T8157 329-331 IN denotes at
T8158 332-336 CD denotes 6000
T8160 336-337 SYM denotes ×
T8159 338-339 NN denotes g
T8161 340-342 IN denotes at
T8162 343-344 CD denotes 4
T8163 344-346 NNS denotes °C
T8164 347-350 IN denotes for
T8165 351-353 CD denotes 10
T8166 354-357 NN denotes min
T8167 357-358 . denotes .
T8168 358-450 sentence denotes Protein concentration in the supernatant was determined using the Bio-Rad DC protein assay.
T8169 359-366 NN denotes Protein
T8170 367-380 NN denotes concentration
T8172 381-383 IN denotes in
T8173 384-387 DT denotes the
T8174 388-399 NN denotes supernatant
T8175 400-403 VBD denotes was
T8171 404-414 VBN denotes determined
T8176 415-420 VBG denotes using
T8177 421-424 DT denotes the
T8179 425-428 NN denotes Bio
T8181 428-429 HYPH denotes -
T8180 429-432 NN denotes Rad
T8182 433-435 NN denotes DC
T8183 436-443 NN denotes protein
T8178 444-449 NN denotes assay
T8184 449-450 . denotes .
T8185 450-605 sentence denotes Lysates were separated on single percentage SDS/PAGE gels, then electrophoretically transferred to poly(vinylidene difluoride), using standard procedures.
T8186 451-458 NNS denotes Lysates
T8188 459-463 VBD denotes were
T8187 464-473 VBN denotes separated
T8189 474-476 IN denotes on
T8190 477-483 JJ denotes single
T8191 484-494 NN denotes percentage
T8193 495-498 NN denotes SDS
T8195 498-499 HYPH denotes /
T8194 499-503 NN denotes PAGE
T8192 504-508 NNS denotes gels
T8196 508-510 , denotes ,
T8197 510-514 RB denotes then
T8199 515-534 RB denotes electrophoretically
T8198 535-546 VBN denotes transferred
T8200 547-549 IN denotes to
T8201 550-554 NN denotes poly
T8202 554-555 -LRB- denotes (
T8204 555-565 NN denotes vinylidene
T8203 566-576 NN denotes difluoride
T8205 576-577 -RRB- denotes )
T8206 577-579 , denotes ,
T8207 579-584 VBG denotes using
T8208 585-593 JJ denotes standard
T8209 594-604 NNS denotes procedures
T8210 604-605 . denotes .
T8211 605-610 NNS denotes Blots
T8213 605-824 sentence denotes Blots were incubated in 5% non-fat dried milk in TBST (0.02 M Tris, pH 7.6/0.35 M NaCl/0.1% Tween-20) for 1 h at room temperature before probing with primary antibodies against p53 (CM-5, Novacastra) and -actin (Sigma).
T8214 611-615 VBD denotes were
T8212 616-625 VBN denotes incubated
T8215 626-628 IN denotes in
T8216 629-630 CD denotes 5
T8217 630-631 NN denotes %
T8219 632-639 JJ denotes non-fat
T8220 640-645 VBN denotes dried
T8218 646-650 NN denotes milk
T8221 651-653 IN denotes in
T8222 654-658 NN denotes TBST
T8223 659-660 -LRB- denotes (
T8225 660-664 CD denotes 0.02
T8226 665-666 NN denotes M
T8227 667-671 NN denotes Tris
T8228 671-673 , denotes ,
T8229 673-675 NN denotes pH
T8230 676-679 CD denotes 7.6
T8231 679-680 HYPH denotes /
T8232 680-684 CD denotes 0.35
T8233 685-686 NN denotes M
T8234 687-691 NN denotes NaCl
T8235 691-692 HYPH denotes /
T8236 692-695 CD denotes 0.1
T8237 695-696 NN denotes %
T8224 697-702 NN denotes Tween
T8238 702-703 HYPH denotes -
T8239 703-705 CD denotes 20
T8240 705-706 -RRB- denotes )
T8241 707-710 IN denotes for
T8242 711-712 CD denotes 1
T8243 713-714 NN denotes h
T8244 715-717 IN denotes at
T8245 718-722 NN denotes room
T8246 723-734 NN denotes temperature
T8247 735-741 IN denotes before
T8248 742-749 VBG denotes probing
T8249 750-754 IN denotes with
T8250 755-762 JJ denotes primary
T8251 763-773 NNS denotes antibodies
T8252 774-781 IN denotes against
T8253 782-785 NN denotes p53
T8254 786-787 -LRB- denotes (
T8256 787-789 NN denotes CM
T8257 789-790 HYPH denotes -
T8258 790-791 CD denotes 5
T8259 791-793 , denotes ,
T8255 793-803 NNP denotes Novacastra
T8260 803-804 -RRB- denotes )
T8261 805-808 CC denotes and
T8262 809-810 HYPH denotes -
T8263 810-815 NN denotes actin
T8264 816-817 -LRB- denotes (
T8265 817-822 NNP denotes Sigma
T8266 822-823 -RRB- denotes )
T8267 823-824 . denotes .
T8268 824-930 sentence denotes Secondary antibodies used include peroxidase-conjugated goat anti-mouse IgG and anti-rabbit IgG (Pierce).
T8269 825-834 JJ denotes Secondary
T8270 835-845 NNS denotes antibodies
T8272 846-850 VBN denotes used
T8271 851-858 VBP denotes include
T8273 859-869 NN denotes peroxidase
T8275 869-870 HYPH denotes -
T8274 870-880 VBN denotes conjugated
T8277 881-885 NN denotes goat
T8278 886-896 NN denotes anti-mouse
T8276 897-900 NN denotes IgG
T8279 901-904 CC denotes and
T8280 905-916 NN denotes anti-rabbit
T8281 917-920 NN denotes IgG
T8282 921-922 -LRB- denotes (
T8283 922-928 NNP denotes Pierce
T8284 928-929 -RRB- denotes )
T8285 929-930 . denotes .
T8286 930-1047 sentence denotes Probed blots were incubated with Pierce Supersignal West Pico chemiluminescent substrate and exposed to X-ray films.
T8287 931-937 VBN denotes Probed
T8288 938-943 NNS denotes blots
T8290 944-948 VBD denotes were
T8289 949-958 VBN denotes incubated
T8291 959-963 IN denotes with
T8292 964-970 NNP denotes Pierce
T8294 971-982 NNP denotes Supersignal
T8295 983-987 NNP denotes West
T8296 988-992 NNP denotes Pico
T8297 993-1009 JJ denotes chemiluminescent
T8293 1010-1019 NN denotes substrate
T8298 1020-1023 CC denotes and
T8299 1024-1031 VBN denotes exposed
T8300 1032-1034 IN denotes to
T8301 1035-1040 NN denotes X-ray
T8302 1041-1046 NNS denotes films
T8303 1046-1047 . denotes .
R2375 T8074 T8075 nsubjpass Cells,lysed
R2376 T8076 T8074 punct ", ",Cells
R2377 T8077 T8074 amod untreated,Cells
R2378 T8078 T8077 cc or,untreated
R2379 T8079 T8077 conj treated,untreated
R2380 T8080 T8079 prep for,treated
R2381 T8081 T8082 nummod 24,h
R2382 T8082 T8080 pobj h,for
R2383 T8083 T8079 prep with,treated
R2384 T8084 T8085 nummod 0.5,μg
R2385 T8085 T8086 nmod μg,adriamycin
R2386 T8086 T8083 pobj adriamycin,with
R2387 T8087 T8088 punct /,ml
R2388 T8088 T8085 prep ml,μg
R2389 T8089 T8075 punct ", ",lysed
R2390 T8090 T8075 auxpass were,lysed
R2391 T8091 T8075 prep on,lysed
R2392 T8092 T8093 det the,dish
R2393 T8093 T8091 pobj dish,on
R2394 T8094 T8075 prep in,lysed
R2395 T8095 T8096 det a,buffer
R2396 T8096 T8094 pobj buffer,in
R2397 T8097 T8096 acl consisting,buffer
R2398 T8098 T8097 prep of,consisting
R2399 T8099 T8100 nummod 50,mM
R2400 T8100 T8101 compound mM,Tris
R2401 T8101 T8098 pobj Tris,of
R2402 T8102 T8103 punct (,pH
R2403 T8103 T8101 parataxis pH,Tris
R2404 T8104 T8103 nummod 8.0,pH
R2405 T8105 T8103 punct ),pH
R2406 T8106 T8101 punct ", ",Tris
R2407 T8107 T8108 nummod 5,mM
R2408 T8108 T8109 compound mM,EDTA
R2409 T8109 T8101 conj EDTA,Tris
R2410 T8110 T8109 punct ", ",EDTA
R2411 T8111 T8112 nummod 150,mM
R2412 T8112 T8113 compound mM,NaCl
R2413 T8113 T8109 conj NaCl,EDTA
R2414 T8114 T8113 punct ", ",NaCl
R2415 T8115 T8116 nummod 0.5,%
R2416 T8116 T8117 compound %,40
R2417 T8117 T8113 conj 40,NaCl
R2418 T8118 T8117 compound Nonidet,40
R2419 T8119 T8117 compound P,40
R2420 T8120 T8117 punct -,40
R2421 T8121 T8117 punct ", ",40
R2422 T8122 T8123 nummod 1,mM
R2423 T8123 T8124 compound mM,PMSF
R2424 T8124 T8117 conj PMSF,40
R2425 T8125 T8124 punct ", ",PMSF
R2426 T8126 T8127 nummod 1,mM
R2427 T8127 T8128 compound mM,vanadate
R2428 T8128 T8124 conj vanadate,PMSF
R2429 T8129 T8128 compound sodium,vanadate
R2430 T8130 T8128 punct ", ",vanadate
R2431 T8131 T8132 nummod 10,mM
R2432 T8132 T8133 compound mM,NaF
R2433 T8133 T8128 conj NaF,vanadate
R2434 T8134 T8133 cc and,NaF
R2435 T8135 T8136 compound Complete,Mini
R2436 T8136 T8137 compound Mini,Inhibitors
R2437 T8137 T8133 conj Inhibitors,NaF
R2438 T8138 T8137 compound Protease,Inhibitors
R2439 T8139 T8140 punct (,Diagnostics
R2440 T8140 T8137 parataxis Diagnostics,Inhibitors
R2441 T8141 T8140 compound Roche,Diagnostics
R2442 T8142 T8140 punct ),Diagnostics
R2443 T8143 T8075 prep at,lysed
R2444 T8144 T8145 nummod 4,°C
R2445 T8145 T8143 pobj °C,at
R2446 T8146 T8075 prep for,lysed
R2447 T8147 T8148 nummod 30,min
R2448 T8148 T8146 pobj min,for
R2449 T8149 T8075 punct .,lysed
R2450 T8151 T8152 nsubjpass Lysates,scraped
R2451 T8153 T8152 auxpass were,scraped
R2452 T8154 T8152 punct ", ",scraped
R2453 T8155 T8156 advmod then,spun
R2454 T8156 T8152 dep spun,scraped
R2455 T8157 T8156 prep at,spun
R2456 T8158 T8159 nummod 6000,g
R2457 T8159 T8157 pobj g,at
R2458 T8160 T8159 punct ×,g
R2459 T8161 T8156 prep at,spun
R2460 T8162 T8163 nummod 4,°C
R2461 T8163 T8161 pobj °C,at
R2462 T8164 T8156 prep for,spun
R2463 T8165 T8166 nummod 10,min
R2464 T8166 T8164 pobj min,for
R2465 T8167 T8152 punct .,scraped
R2466 T8169 T8170 compound Protein,concentration
R2467 T8170 T8171 nsubjpass concentration,determined
R2468 T8172 T8170 prep in,concentration
R2469 T8173 T8174 det the,supernatant
R2470 T8174 T8172 pobj supernatant,in
R2471 T8175 T8171 auxpass was,determined
R2472 T8176 T8171 advcl using,determined
R2473 T8177 T8178 det the,assay
R2474 T8178 T8176 dobj assay,using
R2475 T8179 T8180 compound Bio,Rad
R2476 T8180 T8178 compound Rad,assay
R2477 T8181 T8180 punct -,Rad
R2478 T8182 T8178 compound DC,assay
R2479 T8183 T8178 compound protein,assay
R2480 T8184 T8171 punct .,determined
R2481 T8186 T8187 nsubjpass Lysates,separated
R2482 T8188 T8187 auxpass were,separated
R2483 T8189 T8187 prep on,separated
R2484 T8190 T8191 amod single,percentage
R2485 T8191 T8192 compound percentage,gels
R2486 T8192 T8189 pobj gels,on
R2487 T8193 T8194 compound SDS,PAGE
R2488 T8194 T8192 compound PAGE,gels
R2489 T8195 T8194 punct /,PAGE
R2490 T8196 T8187 punct ", ",separated
R2491 T8197 T8198 advmod then,transferred
R2492 T8198 T8187 dep transferred,separated
R2493 T8199 T8198 advmod electrophoretically,transferred
R2494 T8200 T8198 prep to,transferred
R2495 T8201 T8200 pobj poly,to
R2496 T8202 T8203 punct (,difluoride
R2497 T8203 T8201 parataxis difluoride,poly
R2498 T8204 T8203 compound vinylidene,difluoride
R2499 T8205 T8203 punct ),difluoride
R2500 T8206 T8198 punct ", ",transferred
R2501 T8207 T8198 advcl using,transferred
R2502 T8208 T8209 amod standard,procedures
R2503 T8209 T8207 dobj procedures,using
R2504 T8210 T8187 punct .,separated
R2505 T8211 T8212 nsubjpass Blots,incubated
R2506 T8214 T8212 auxpass were,incubated
R2507 T8215 T8212 prep in,incubated
R2508 T8216 T8217 nummod 5,%
R2509 T8217 T8218 nmod %,milk
R2510 T8218 T8215 pobj milk,in
R2511 T8219 T8218 amod non-fat,milk
R2512 T8220 T8218 amod dried,milk
R2513 T8221 T8212 prep in,incubated
R2514 T8222 T8221 pobj TBST,in
R2515 T8223 T8224 punct (,Tween
R2516 T8224 T8222 parataxis Tween,TBST
R2517 T8225 T8226 nummod 0.02,M
R2518 T8226 T8227 compound M,Tris
R2519 T8227 T8224 dep Tris,Tween
R2520 T8228 T8224 punct ", ",Tween
R2521 T8229 T8224 nmod pH,Tween
R2522 T8230 T8229 nummod 7.6,pH
R2523 T8231 T8224 punct /,Tween
R2524 T8232 T8233 nummod 0.35,M
R2525 T8233 T8234 nmod M,NaCl
R2526 T8234 T8224 nmod NaCl,Tween
R2527 T8235 T8224 punct /,Tween
R2528 T8236 T8237 nummod 0.1,%
R2529 T8237 T8224 compound %,Tween
R2530 T8238 T8224 punct -,Tween
R2531 T8239 T8224 nummod 20,Tween
R2532 T8240 T8224 punct ),Tween
R2533 T8241 T8212 prep for,incubated
R2534 T8242 T8243 nummod 1,h
R2535 T8243 T8241 pobj h,for
R2536 T8244 T8212 prep at,incubated
R2537 T8245 T8246 compound room,temperature
R2538 T8246 T8244 pobj temperature,at
R2539 T8247 T8212 prep before,incubated
R2540 T8248 T8247 pcomp probing,before
R2541 T8249 T8248 prep with,probing
R2542 T8250 T8251 amod primary,antibodies
R2543 T8251 T8249 pobj antibodies,with
R2544 T8252 T8251 prep against,antibodies
R2545 T8253 T8252 pobj p53,against
R2546 T8254 T8255 punct (,Novacastra
R2547 T8255 T8253 parataxis Novacastra,p53
R2548 T8256 T8255 dep CM,Novacastra
R2549 T8257 T8256 punct -,CM
R2550 T8258 T8256 nummod 5,CM
R2551 T8259 T8255 punct ", ",Novacastra
R2552 T8260 T8255 punct ),Novacastra
R2553 T8261 T8253 cc and,p53
R2554 T8262 T8263 punct -,actin
R2555 T8263 T8253 conj actin,p53
R2556 T8264 T8265 punct (,Sigma
R2557 T8265 T8263 parataxis Sigma,actin
R2558 T8266 T8265 punct ),Sigma
R2559 T8267 T8212 punct .,incubated
R2560 T8269 T8270 amod Secondary,antibodies
R2561 T8270 T8271 nsubj antibodies,include
R2562 T8272 T8270 acl used,antibodies
R2563 T8273 T8274 npadvmod peroxidase,conjugated
R2564 T8274 T8276 amod conjugated,IgG
R2565 T8275 T8274 punct -,conjugated
R2566 T8276 T8271 dobj IgG,include
R2567 T8277 T8276 compound goat,IgG
R2568 T8278 T8276 compound anti-mouse,IgG
R2569 T8279 T8276 cc and,IgG
R2570 T8280 T8281 compound anti-rabbit,IgG
R2571 T8281 T8276 conj IgG,IgG
R2572 T8282 T8283 punct (,Pierce
R2573 T8283 T8281 parataxis Pierce,IgG
R2574 T8284 T8283 punct ),Pierce
R2575 T8285 T8271 punct .,include
R2576 T8287 T8288 amod Probed,blots
R2577 T8288 T8289 nsubjpass blots,incubated
R2578 T8290 T8289 auxpass were,incubated
R2579 T8291 T8289 prep with,incubated
R2580 T8292 T8293 nmod Pierce,substrate
R2581 T8293 T8291 pobj substrate,with
R2582 T8294 T8295 nmod Supersignal,West
R2583 T8295 T8293 nmod West,substrate
R2584 T8296 T8293 nmod Pico,substrate
R2585 T8297 T8293 amod chemiluminescent,substrate
R2586 T8298 T8289 cc and,incubated
R2587 T8299 T8289 conj exposed,incubated
R2588 T8300 T8299 prep to,exposed
R2589 T8301 T8302 compound X-ray,films
R2590 T8302 T8300 pobj films,to
R2591 T8303 T8289 punct .,incubated