PMC:1435744 / 9150-10255 JSONTXT 4 Projects

Annnotations TAB TSV DIC JSON TextAE

Id Subject Object Predicate Lexical cue
T28701 10-12 NN denotes mr
T28703 12-13 HYPH denotes -
T28702 13-14 NN denotes s
T28704 15-25 NN denotes nucleotide
T28706 26-29 CC denotes and
T28707 30-35 NN denotes amino
T28708 36-40 NN denotes acid
T28705 41-50 NNS denotes sequences
T28709 50-51 . denotes .
T28710 51-98 sentence denotes (A) mr-s nucleotide and amino acids sequences.
T28711 52-53 -LRB- denotes (
T28712 53-54 LS denotes A
T28714 54-55 -RRB- denotes )
T28715 56-58 NN denotes mr
T28717 58-59 HYPH denotes -
T28716 59-60 NN denotes s
T28718 61-71 NN denotes nucleotide
T28719 72-75 CC denotes and
T28720 76-81 NN denotes amino
T28721 82-87 NNS denotes acids
T28713 88-97 NNS denotes sequences
T28722 97-98 . denotes .
T28723 98-213 sentence denotes Boxed amino acids are the SAM domain sequence and the dashed box indicates a putative nuclear localization signal.
T28724 99-104 VBN denotes Boxed
T28726 105-110 NN denotes amino
T28725 111-116 NNS denotes acids
T28727 117-120 VBP denotes are
T28728 121-124 DT denotes the
T28730 125-128 NN denotes SAM
T28731 129-135 NN denotes domain
T28729 136-144 NN denotes sequence
T28732 145-148 CC denotes and
T28733 149-152 DT denotes the
T28735 153-159 JJ denotes dashed
T28734 160-163 NN denotes box
T28736 164-173 VBZ denotes indicates
T28737 174-175 DT denotes a
T28739 176-184 JJ denotes putative
T28740 185-192 JJ denotes nuclear
T28741 193-205 NN denotes localization
T28738 206-212 NN denotes signal
T28742 212-213 . denotes .
T28743 213-284 sentence denotes The underline indicates a putative polyadenylation termination signal.
T28744 214-217 DT denotes The
T28745 218-227 NN denotes underline
T28746 228-237 VBZ denotes indicates
T28747 238-239 DT denotes a
T28749 240-248 JJ denotes putative
T28750 249-264 NN denotes polyadenylation
T28751 265-276 NN denotes termination
T28748 277-283 NN denotes signal
T28752 283-284 . denotes .
T28753 284-358 sentence denotes (B) Alignment of SAM domain sequences for SAM domain-containing proteins.
T28754 285-286 -LRB- denotes (
T28755 286-287 LS denotes B
T28757 287-288 -RRB- denotes )
T28756 289-298 NN denotes Alignment
T28758 299-301 IN denotes of
T28759 302-305 NN denotes SAM
T28760 306-312 NN denotes domain
T28761 313-322 NNS denotes sequences
T28762 323-326 IN denotes for
T28763 327-330 NN denotes SAM
T28764 331-337 NN denotes domain
T28766 337-338 HYPH denotes -
T28765 338-348 VBG denotes containing
T28767 349-357 NN denotes proteins
T28768 357-358 . denotes .
T28769 358-399 sentence denotes The five alpha helices are marked H1-H5.
T28770 359-362 DT denotes The
T28772 363-367 CD denotes five
T28773 368-373 NN denotes alpha
T28771 374-381 NNS denotes helices
T28775 382-385 VBP denotes are
T28774 386-392 VBN denotes marked
T28776 393-395 NN denotes H1
T28777 395-396 SYM denotes -
T28778 396-398 NN denotes H5
T28779 398-399 . denotes .
T28780 399-523 sentence denotes Conserved amino acid residues are shown with a dark shadow and functionally similar residues are shown with a light shadow.
T28781 400-409 VBN denotes Conserved
T28783 410-415 NN denotes amino
T28784 416-420 NN denotes acid
T28782 421-429 NNS denotes residues
T28786 430-433 VBP denotes are
T28785 434-439 VBN denotes shown
T28787 440-444 IN denotes with
T28788 445-446 DT denotes a
T28790 447-451 JJ denotes dark
T28789 452-458 NN denotes shadow
T28791 459-462 CC denotes and
T28792 463-475 RB denotes functionally
T28793 476-483 JJ denotes similar
T28794 484-492 NNS denotes residues
T28796 493-496 VBP denotes are
T28795 497-502 VBN denotes shown
T28797 503-507 IN denotes with
T28798 508-509 DT denotes a
T28800 510-515 JJ denotes light
T28799 516-522 NN denotes shadow
T28801 522-523 . denotes .
T28802 523-593 sentence denotes The sites that were targeted for mutagenesis are indicated by arrows.
T28803 524-527 DT denotes The
T28804 528-533 NNS denotes sites
T28806 534-538 WDT denotes that
T28808 539-543 VBD denotes were
T28807 544-552 VBN denotes targeted
T28809 553-556 IN denotes for
T28810 557-568 NN denotes mutagenesis
T28811 569-572 VBP denotes are
T28805 573-582 VBN denotes indicated
T28812 583-585 IN denotes by
T28813 586-592 NNS denotes arrows
T28814 592-593 . denotes .
T28815 593-650 sentence denotes (C) Phylogenetic tree of SAM domain-containing proteins.
T28816 594-595 -LRB- denotes (
T28817 595-596 LS denotes C
T28819 596-597 -RRB- denotes )
T28820 598-610 JJ denotes Phylogenetic
T28818 611-615 NN denotes tree
T28821 616-618 IN denotes of
T28822 619-622 NN denotes SAM
T28823 623-629 NN denotes domain
T28825 629-630 HYPH denotes -
T28824 630-640 VBG denotes containing
T28826 641-649 NN denotes proteins
T28827 649-650 . denotes .
T28828 650-734 sentence denotes Amino acid sequences were analyzed by the neighbor-joining method in MacVector 7.2.
T28829 651-656 NN denotes Amino
T28830 657-661 NN denotes acid
T28831 662-671 NNS denotes sequences
T28833 672-676 VBD denotes were
T28832 677-685 VBN denotes analyzed
T28834 686-688 IN denotes by
T28835 689-692 DT denotes the
T28837 693-701 NN denotes neighbor
T28839 701-702 HYPH denotes -
T28838 702-709 VBG denotes joining
T28836 710-716 NN denotes method
T28840 717-719 IN denotes in
T28841 720-729 NNP denotes MacVector
T28842 730-733 CD denotes 7.2
T28843 733-734 . denotes .
T28844 734-800 sentence denotes Branch lengths reflect the mean number of substitutions per site.
T28845 735-741 NN denotes Branch
T28846 742-749 NNS denotes lengths
T28847 750-757 VBP denotes reflect
T28848 758-761 DT denotes the
T28850 762-766 NN denotes mean
T28849 767-773 NN denotes number
T28851 774-776 IN denotes of
T28852 777-790 NNS denotes substitutions
T28853 791-794 IN denotes per
T28854 795-799 NN denotes site
T28855 799-800 . denotes .
T28856 800-911 sentence denotes (D) Schematic comparison of the amino acid sequences for mouse, rat, human, chick and zebrafish mr-s proteins.
T28857 801-802 -LRB- denotes (
T28858 802-803 LS denotes D
T28860 803-804 -RRB- denotes )
T28861 805-814 JJ denotes Schematic
T28859 815-825 NN denotes comparison
T28862 826-828 IN denotes of
T28863 829-832 DT denotes the
T28865 833-838 NN denotes amino
T28866 839-843 NN denotes acid
T28864 844-853 NNS denotes sequences
T28867 854-857 IN denotes for
T28868 858-863 NN denotes mouse
T28870 863-865 , denotes ,
T28871 865-868 NN denotes rat
T28872 868-870 , denotes ,
T28873 870-875 JJ denotes human
T28874 875-877 , denotes ,
T28875 877-882 NN denotes chick
T28876 883-886 CC denotes and
T28877 887-896 NN denotes zebrafish
T28878 897-899 NN denotes mr
T28880 899-900 HYPH denotes -
T28879 900-901 NN denotes s
T28869 902-910 NN denotes proteins
T28881 910-911 . denotes .
T28882 911-1031 sentence denotes The percent similarity of the SAM domains and other regions to the corresponding regions of the mouse protein is shown.
T28883 912-915 DT denotes The
T28885 916-923 NN denotes percent
T28884 924-934 NN denotes similarity
T28887 935-937 IN denotes of
T28888 938-941 DT denotes the
T28890 942-945 NN denotes SAM
T28889 946-953 NNS denotes domains
T28891 954-957 CC denotes and
T28892 958-963 JJ denotes other
T28893 964-971 NNS denotes regions
T28894 972-974 IN denotes to
T28895 975-978 DT denotes the
T28897 979-992 VBG denotes corresponding
T28896 993-1000 NNS denotes regions
T28898 1001-1003 IN denotes of
T28899 1004-1007 DT denotes the
T28901 1008-1013 NN denotes mouse
T28900 1014-1021 NN denotes protein
T28902 1022-1024 VBZ denotes is
T28886 1025-1030 VBN denotes shown
T28903 1030-1031 . denotes .
T28904 1031-1105 sentence denotes Overall sequence similarity with the mouse protein is shown on the right.
T28905 1032-1039 JJ denotes Overall
T28907 1040-1048 NN denotes sequence
T28906 1049-1059 NN denotes similarity
T28909 1060-1064 IN denotes with
T28910 1065-1068 DT denotes the
T28912 1069-1074 NN denotes mouse
T28911 1075-1082 NN denotes protein
T28913 1083-1085 VBZ denotes is
T28908 1086-1091 VBN denotes shown
T28914 1092-1094 IN denotes on
T28915 1095-1098 DT denotes the
T28916 1099-1104 NN denotes right
T28917 1104-1105 . denotes .
R8157 T28701 T28702 nmod mr,s
R8158 T28702 T28704 nmod s,nucleotide
R8159 T28703 T28702 punct -,s
R8160 T28704 T28705 nmod nucleotide,sequences
R8161 T28706 T28704 cc and,nucleotide
R8162 T28707 T28708 compound amino,acid
R8163 T28708 T28704 conj acid,nucleotide
R8164 T28709 T28705 punct .,sequences
R8165 T28711 T28712 punct (,A
R8166 T28712 T28713 meta A,sequences
R8167 T28714 T28712 punct ),A
R8168 T28715 T28716 nmod mr,s
R8169 T28716 T28718 nmod s,nucleotide
R8170 T28717 T28716 punct -,s
R8171 T28718 T28713 nmod nucleotide,sequences
R8172 T28719 T28718 cc and,nucleotide
R8173 T28720 T28721 compound amino,acids
R8174 T28721 T28718 conj acids,nucleotide
R8175 T28722 T28713 punct .,sequences
R8176 T28724 T28725 amod Boxed,acids
R8177 T28725 T28727 nsubj acids,are
R8178 T28726 T28725 compound amino,acids
R8179 T28728 T28729 det the,sequence
R8180 T28729 T28727 attr sequence,are
R8181 T28730 T28731 compound SAM,domain
R8182 T28731 T28729 compound domain,sequence
R8183 T28732 T28727 cc and,are
R8184 T28733 T28734 det the,box
R8185 T28734 T28736 nsubj box,indicates
R8186 T28735 T28734 amod dashed,box
R8187 T28736 T28727 conj indicates,are
R8188 T28737 T28738 det a,signal
R8189 T28738 T28736 dobj signal,indicates
R8190 T28739 T28738 amod putative,signal
R8191 T28740 T28741 amod nuclear,localization
R8192 T28741 T28738 compound localization,signal
R8193 T28742 T28736 punct .,indicates
R8194 T28744 T28745 det The,underline
R8195 T28745 T28746 nsubj underline,indicates
R8196 T28747 T28748 det a,signal
R8197 T28748 T28746 dobj signal,indicates
R8198 T28749 T28748 amod putative,signal
R8199 T28750 T28751 compound polyadenylation,termination
R8200 T28751 T28748 compound termination,signal
R8201 T28752 T28746 punct .,indicates
R8202 T28754 T28755 punct (,B
R8203 T28755 T28756 meta B,Alignment
R8204 T28757 T28755 punct ),B
R8205 T28758 T28756 prep of,Alignment
R8206 T28759 T28760 compound SAM,domain
R8207 T28760 T28761 compound domain,sequences
R8208 T28761 T28758 pobj sequences,of
R8209 T28762 T28761 prep for,sequences
R8210 T28763 T28764 compound SAM,domain
R8211 T28764 T28765 npadvmod domain,containing
R8212 T28765 T28767 amod containing,proteins
R8213 T28766 T28765 punct -,containing
R8214 T28767 T28762 pobj proteins,for
R8215 T28768 T28756 punct .,Alignment
R8216 T28770 T28771 det The,helices
R8217 T28771 T28774 nsubjpass helices,marked
R8218 T28772 T28771 nummod five,helices
R8219 T28773 T28771 compound alpha,helices
R8220 T28775 T28774 auxpass are,marked
R8221 T28776 T28774 oprd H1,marked
R8222 T28777 T28778 punct -,H5
R8223 T28778 T28776 prep H5,H1
R8224 T28779 T28774 punct .,marked
R8225 T28781 T28782 amod Conserved,residues
R8226 T28782 T28785 nsubjpass residues,shown
R8227 T28783 T28784 compound amino,acid
R8228 T28784 T28782 compound acid,residues
R8229 T28786 T28785 auxpass are,shown
R8230 T28787 T28785 prep with,shown
R8231 T28788 T28789 det a,shadow
R8232 T28789 T28787 pobj shadow,with
R8233 T28790 T28789 amod dark,shadow
R8234 T28791 T28785 cc and,shown
R8235 T28792 T28793 advmod functionally,similar
R8236 T28793 T28794 amod similar,residues
R8237 T28794 T28795 nsubjpass residues,shown
R8238 T28795 T28785 conj shown,shown
R8239 T28796 T28795 auxpass are,shown
R8240 T28797 T28795 prep with,shown
R8241 T28798 T28799 det a,shadow
R8242 T28799 T28797 pobj shadow,with
R8243 T28800 T28799 amod light,shadow
R8244 T28801 T28795 punct .,shown
R8245 T28803 T28804 det The,sites
R8246 T28804 T28805 nsubjpass sites,indicated
R8247 T28806 T28807 dep that,targeted
R8248 T28807 T28804 relcl targeted,sites
R8249 T28808 T28807 auxpass were,targeted
R8250 T28809 T28807 prep for,targeted
R8251 T28810 T28809 pobj mutagenesis,for
R8252 T28811 T28805 auxpass are,indicated
R8253 T28812 T28805 prep by,indicated
R8254 T28813 T28812 pobj arrows,by
R8255 T28814 T28805 punct .,indicated
R8256 T28816 T28817 punct (,C
R8257 T28817 T28818 meta C,tree
R8258 T28819 T28817 punct ),C
R8259 T28820 T28818 amod Phylogenetic,tree
R8260 T28821 T28818 prep of,tree
R8261 T28822 T28823 compound SAM,domain
R8262 T28823 T28824 npadvmod domain,containing
R8263 T28824 T28826 amod containing,proteins
R8264 T28825 T28824 punct -,containing
R8265 T28826 T28821 pobj proteins,of
R8266 T28827 T28818 punct .,tree
R8267 T28829 T28830 compound Amino,acid
R8268 T28830 T28831 compound acid,sequences
R8269 T28831 T28832 nsubjpass sequences,analyzed
R8270 T28833 T28832 auxpass were,analyzed
R8271 T28834 T28832 prep by,analyzed
R8272 T28835 T28836 det the,method
R8273 T28836 T28834 pobj method,by
R8274 T28837 T28838 npadvmod neighbor,joining
R8275 T28838 T28836 amod joining,method
R8276 T28839 T28838 punct -,joining
R8277 T28840 T28832 prep in,analyzed
R8278 T28841 T28840 pobj MacVector,in
R8279 T28842 T28841 nummod 7.2,MacVector
R8280 T28843 T28832 punct .,analyzed
R8281 T28845 T28846 compound Branch,lengths
R8282 T28846 T28847 nsubj lengths,reflect
R8283 T28848 T28849 det the,number
R8284 T28849 T28847 dobj number,reflect
R8285 T28850 T28849 compound mean,number
R8286 T28851 T28849 prep of,number
R8287 T28852 T28851 pobj substitutions,of
R8288 T28853 T28852 prep per,substitutions
R8289 T28854 T28853 pobj site,per
R8290 T28855 T28847 punct .,reflect
R8291 T28857 T28858 punct (,D
R8292 T28858 T28859 meta D,comparison
R8293 T28860 T28858 punct ),D
R8294 T28861 T28859 amod Schematic,comparison
R8295 T28862 T28859 prep of,comparison
R8296 T28863 T28864 det the,sequences
R8297 T28864 T28862 pobj sequences,of
R8298 T28865 T28866 compound amino,acid
R8299 T28866 T28864 compound acid,sequences
R8300 T28867 T28864 prep for,sequences
R8301 T28868 T28869 nmod mouse,proteins
R8302 T28869 T28867 pobj proteins,for
R8303 T28870 T28868 punct ", ",mouse
R8304 T28871 T28868 conj rat,mouse
R8305 T28872 T28871 punct ", ",rat
R8306 T28873 T28871 amod human,rat
R8307 T28874 T28871 punct ", ",rat
R8308 T28875 T28871 conj chick,rat
R8309 T28876 T28875 cc and,chick
R8310 T28877 T28875 conj zebrafish,chick
R8311 T28878 T28879 compound mr,s
R8312 T28879 T28869 compound s,proteins
R8313 T28880 T28879 punct -,s
R8314 T28881 T28859 punct .,comparison
R8315 T28883 T28884 det The,similarity
R8316 T28884 T28886 nsubjpass similarity,shown
R8317 T28885 T28884 compound percent,similarity
R8318 T28887 T28884 prep of,similarity
R8319 T28888 T28889 det the,domains
R8320 T28889 T28887 pobj domains,of
R8321 T28890 T28889 compound SAM,domains
R8322 T28891 T28889 cc and,domains
R8323 T28892 T28893 amod other,regions
R8324 T28893 T28889 conj regions,domains
R8325 T28894 T28884 prep to,similarity
R8326 T28895 T28896 det the,regions
R8327 T28896 T28894 pobj regions,to
R8328 T28897 T28896 amod corresponding,regions
R8329 T28898 T28896 prep of,regions
R8330 T28899 T28900 det the,protein
R8331 T28900 T28898 pobj protein,of
R8332 T28901 T28900 compound mouse,protein
R8333 T28902 T28886 auxpass is,shown
R8334 T28903 T28886 punct .,shown
R8335 T28905 T28906 amod Overall,similarity
R8336 T28906 T28908 nsubjpass similarity,shown
R8337 T28907 T28906 compound sequence,similarity
R8338 T28909 T28906 prep with,similarity
R8339 T28910 T28911 det the,protein
R8340 T28911 T28909 pobj protein,with
R8341 T28912 T28911 compound mouse,protein
R8342 T28913 T28908 auxpass is,shown
R8343 T28914 T28908 prep on,shown
R8344 T28915 T28916 det the,right
R8345 T28916 T28914 pobj right,on
R8346 T28917 T28908 punct .,shown