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PMC:1435744 / 7044-9149 JSONTXT 4 Projects

Annnotations TAB TSV DIC JSON TextAE

Id Subject Object Predicate Lexical cue
T5553 0-2 IN denotes In
T5555 3-8 NN denotes order
T5556 9-11 TO denotes to
T5557 12-20 VB denotes identify
T5558 21-26 JJ denotes novel
T5560 27-32 NN denotes mouse
T5559 33-38 NNS denotes genes
T5561 39-53 RB denotes preferentially
T5562 54-63 VBN denotes expressed
T5563 64-66 IN denotes in
T5564 67-70 DT denotes the
T5566 71-81 VBG denotes developing
T5565 82-88 NN denotes retina
T5567 88-90 , denotes ,
T5568 90-92 PRP denotes we
T5554 93-101 VBD denotes screened
T5569 102-105 DT denotes the
T5571 106-114 NNP denotes National
T5572 115-124 NNP denotes Institute
T5573 125-128 IN denotes for
T5574 129-142 NNP denotes Biotechnology
T5575 143-154 NNP denotes Information
T5576 155-156 -LRB- denotes (
T5577 156-160 NNP denotes NCBI
T5578 160-161 -RRB- denotes )
T5570 162-170 NN denotes database
T5579 170-172 , denotes ,
T5580 172-179 NNP denotes UniGene
T5581 179-181 , denotes ,
T5582 181-186 VBG denotes using
T5583 187-194 NNP denotes Digital
T5585 195-207 NNP denotes Differential
T5584 208-215 NNP denotes Display
T5586 216-217 -LRB- denotes (
T5587 217-220 NNP denotes DDD
T5588 220-221 -RRB- denotes )
T5589 222-225 CC denotes and
T5590 226-231 VBD denotes found
T5591 232-235 NN denotes EST
T5592 236-245 NNS denotes fragments
T5593 246-251 WDT denotes which
T5594 252-255 VBP denotes are
T5595 256-266 RB denotes frequently
T5596 267-274 JJ denotes present
T5597 275-277 IN denotes in
T5598 278-283 NN denotes mouse
T5600 284-291 JJ denotes retinal
T5601 292-296 NN denotes cDNA
T5599 297-306 NNS denotes libraries
T5602 306-307 . denotes .
T5603 307-429 sentence denotes We found that one clone in these cDNAs encodes a protein containing a SAM domain related to that of polyhomeotic protein.
T5604 308-310 PRP denotes We
T5605 311-316 VBD denotes found
T5606 317-321 IN denotes that
T5608 322-325 CD denotes one
T5609 326-331 NN denotes clone
T5610 332-334 IN denotes in
T5611 335-340 DT denotes these
T5612 341-346 NNS denotes cDNAs
T5607 347-354 VBZ denotes encodes
T5613 355-356 DT denotes a
T5614 357-364 NN denotes protein
T5615 365-375 VBG denotes containing
T5616 376-377 DT denotes a
T5618 378-381 NN denotes SAM
T5617 382-388 NN denotes domain
T5619 389-396 VBN denotes related
T5620 397-399 IN denotes to
T5621 400-404 DT denotes that
T5622 405-407 IN denotes of
T5623 408-420 JJ denotes polyhomeotic
T5624 421-428 NN denotes protein
T5625 428-429 . denotes .
T5626 429-568 sentence denotes A PCR fragment corresponding to this mouse clone was used to screen a mouse P0-P3 retinal cDNA library to obtain a full-length cDNA clone.
T5627 430-431 DT denotes A
T5629 432-435 NN denotes PCR
T5628 436-444 NN denotes fragment
T5631 445-458 VBG denotes corresponding
T5632 459-461 IN denotes to
T5633 462-466 DT denotes this
T5635 467-472 NN denotes mouse
T5634 473-478 NN denotes clone
T5636 479-482 VBD denotes was
T5630 483-487 VBN denotes used
T5637 488-490 TO denotes to
T5638 491-497 VB denotes screen
T5639 498-499 DT denotes a
T5641 500-505 NN denotes mouse
T5642 506-508 NN denotes P0
T5644 508-509 SYM denotes -
T5643 509-511 NN denotes P3
T5645 512-519 JJ denotes retinal
T5646 520-524 NN denotes cDNA
T5640 525-532 NN denotes library
T5647 533-535 TO denotes to
T5648 536-542 VB denotes obtain
T5649 543-544 DT denotes a
T5651 545-549 JJ denotes full
T5653 549-550 HYPH denotes -
T5652 550-556 NN denotes length
T5654 557-561 NN denotes cDNA
T5650 562-567 NN denotes clone
T5655 567-568 . denotes .
T5656 568-667 sentence denotes Sequence analysis showed that this cDNA was a novel gene encoding a SAM domain-containing protein.
T5657 569-577 NN denotes Sequence
T5658 578-586 NN denotes analysis
T5659 587-593 VBD denotes showed
T5660 594-598 IN denotes that
T5662 599-603 DT denotes this
T5663 604-608 NN denotes cDNA
T5661 609-612 VBD denotes was
T5664 613-614 DT denotes a
T5666 615-620 JJ denotes novel
T5665 621-625 NN denotes gene
T5667 626-634 VBG denotes encoding
T5668 635-636 DT denotes a
T5670 637-640 NN denotes SAM
T5671 641-647 NN denotes domain
T5673 647-648 HYPH denotes -
T5672 648-658 VBG denotes containing
T5669 659-666 NN denotes protein
T5674 666-667 . denotes .
T5675 667-739 sentence denotes We referred to this protein as mr-s (major retinal SAM domain protein).
T5676 668-670 PRP denotes We
T5677 671-679 VBD denotes referred
T5678 680-682 IN denotes to
T5679 683-687 DT denotes this
T5680 688-695 NN denotes protein
T5681 696-698 IN denotes as
T5682 699-701 NN denotes mr
T5684 701-702 HYPH denotes -
T5683 702-703 NN denotes s
T5685 704-705 -LRB- denotes (
T5686 705-710 JJ denotes major
T5688 711-718 JJ denotes retinal
T5689 719-722 NN denotes SAM
T5690 723-729 NN denotes domain
T5687 730-737 NN denotes protein
T5691 737-738 -RRB- denotes )
T5692 738-739 . denotes .
T5693 739-852 sentence denotes As shown in Fig. 1A, a translation initiation codon is present in the same open reading frame as the SAM domain.
T5694 740-742 IN denotes As
T5695 743-748 VBN denotes shown
T5697 749-751 IN denotes in
T5698 752-756 NN denotes Fig.
T5699 757-759 NN denotes 1A
T5700 759-761 , denotes ,
T5701 761-762 DT denotes a
T5703 763-774 NN denotes translation
T5704 775-785 NN denotes initiation
T5702 786-791 NN denotes codon
T5696 792-794 VBZ denotes is
T5705 795-802 JJ denotes present
T5706 803-805 IN denotes in
T5707 806-809 DT denotes the
T5709 810-814 JJ denotes same
T5710 815-819 JJ denotes open
T5711 820-827 NN denotes reading
T5708 828-833 NN denotes frame
T5712 834-836 IN denotes as
T5713 837-840 DT denotes the
T5715 841-844 NN denotes SAM
T5714 845-851 NN denotes domain
T5716 851-852 . denotes .
T5717 852-1009 sentence denotes This initiation site shows similarity to the consensus sequence proposed by Kozak [32] including the presence of the highly conserved purine at position -3.
T5718 853-857 DT denotes This
T5720 858-868 NN denotes initiation
T5719 869-873 NN denotes site
T5721 874-879 VBZ denotes shows
T5722 880-890 NN denotes similarity
T5723 891-893 IN denotes to
T5724 894-897 DT denotes the
T5726 898-907 NN denotes consensus
T5725 908-916 NN denotes sequence
T5727 917-925 VBN denotes proposed
T5728 926-928 IN denotes by
T5729 929-934 NN denotes Kozak
T5730 935-936 -LRB- denotes [
T5731 936-938 CD denotes 32
T5732 938-939 -RRB- denotes ]
T5733 940-949 VBG denotes including
T5734 950-953 DT denotes the
T5735 954-962 NN denotes presence
T5736 963-965 IN denotes of
T5737 966-969 DT denotes the
T5739 970-976 RB denotes highly
T5740 977-986 VBN denotes conserved
T5738 987-993 NN denotes purine
T5741 994-996 IN denotes at
T5742 997-1005 NN denotes position
T5743 1006-1007 SYM denotes -
T5744 1007-1008 CD denotes 3
T5745 1008-1009 . denotes .
T5746 1009-1084 sentence denotes The stop codon of the predicted mr-s protein is also indicated in Fig. 1A.
T5747 1010-1013 DT denotes The
T5749 1014-1018 NN denotes stop
T5748 1019-1024 NN denotes codon
T5751 1025-1027 IN denotes of
T5752 1028-1031 DT denotes the
T5754 1032-1041 VBN denotes predicted
T5755 1042-1044 NN denotes mr
T5757 1044-1045 HYPH denotes -
T5756 1045-1046 NN denotes s
T5753 1047-1054 NN denotes protein
T5758 1055-1057 VBZ denotes is
T5759 1058-1062 RB denotes also
T5750 1063-1072 VBN denotes indicated
T5760 1073-1075 IN denotes in
T5761 1076-1080 NN denotes Fig.
T5762 1081-1083 NN denotes 1A
T5763 1083-1084 . denotes .
T5764 1084-1251 sentence denotes The amino acid sequence of the SAM domain of mr-s protein (Fig. 1A, boxed sequence) exhibits homology with SAM domains of EphB2, EphA4, MPH1, TEL and Smaug (Fig. 1B).
T5765 1085-1088 DT denotes The
T5767 1089-1094 NN denotes amino
T5768 1095-1099 NN denotes acid
T5766 1100-1108 NN denotes sequence
T5770 1109-1111 IN denotes of
T5771 1112-1115 DT denotes the
T5773 1116-1119 NN denotes SAM
T5772 1120-1126 NN denotes domain
T5774 1127-1129 IN denotes of
T5775 1130-1132 NN denotes mr
T5777 1132-1133 HYPH denotes -
T5776 1133-1134 NN denotes s
T5778 1135-1142 NN denotes protein
T5779 1143-1144 -LRB- denotes (
T5781 1144-1148 NN denotes Fig.
T5780 1149-1151 NN denotes 1A
T5782 1151-1153 , denotes ,
T5783 1153-1158 VBN denotes boxed
T5784 1159-1167 NN denotes sequence
T5785 1167-1168 -RRB- denotes )
T5769 1169-1177 VBZ denotes exhibits
T5786 1178-1186 NN denotes homology
T5787 1187-1191 IN denotes with
T5788 1192-1195 NN denotes SAM
T5789 1196-1203 NNS denotes domains
T5790 1204-1206 IN denotes of
T5791 1207-1212 NN denotes EphB2
T5792 1212-1214 , denotes ,
T5793 1214-1219 NN denotes EphA4
T5794 1219-1221 , denotes ,
T5795 1221-1225 NN denotes MPH1
T5796 1225-1227 , denotes ,
T5797 1227-1230 NN denotes TEL
T5798 1231-1234 CC denotes and
T5799 1235-1240 NN denotes Smaug
T5800 1241-1242 -LRB- denotes (
T5802 1242-1246 NN denotes Fig.
T5801 1247-1249 NN denotes 1B
T5803 1249-1250 -RRB- denotes )
T5804 1250-1251 . denotes .
T5805 1251-1380 sentence denotes By phylogenetic analysis, the SAM domain of mr-s is most closely related to that of Mph1/Rae28, a mouse homolog of ph (Fig. 1C).
T5806 1252-1254 IN denotes By
T5808 1255-1267 JJ denotes phylogenetic
T5809 1268-1276 NN denotes analysis
T5810 1276-1278 , denotes ,
T5811 1278-1281 DT denotes the
T5813 1282-1285 NN denotes SAM
T5812 1286-1292 NN denotes domain
T5814 1293-1295 IN denotes of
T5815 1296-1298 NN denotes mr
T5817 1298-1299 HYPH denotes -
T5816 1299-1300 NN denotes s
T5818 1301-1303 VBZ denotes is
T5819 1304-1308 RBS denotes most
T5820 1309-1316 RB denotes closely
T5807 1317-1324 VBN denotes related
T5821 1325-1327 IN denotes to
T5822 1328-1332 DT denotes that
T5823 1333-1335 IN denotes of
T5824 1336-1340 NN denotes Mph1
T5826 1340-1341 HYPH denotes /
T5825 1341-1346 NN denotes Rae28
T5827 1346-1348 , denotes ,
T5828 1348-1349 DT denotes a
T5830 1350-1355 NN denotes mouse
T5829 1356-1363 NN denotes homolog
T5831 1364-1366 IN denotes of
T5832 1367-1369 NN denotes ph
T5833 1370-1371 -LRB- denotes (
T5835 1371-1375 NN denotes Fig.
T5834 1376-1378 NN denotes 1C
T5836 1378-1379 -RRB- denotes )
T5837 1379-1380 . denotes .
T5838 1380-1534 sentence denotes Mouse mr-s protein is conserved in rat, human, chick and zebrafish, which display 91%, 70%, 36% and 26% identity with mouse mr-s, respectively (Fig. 1D).
T5839 1381-1386 NN denotes Mouse
T5841 1387-1389 NN denotes mr
T5843 1389-1390 HYPH denotes -
T5842 1390-1391 NN denotes s
T5840 1392-1399 NN denotes protein
T5845 1400-1402 VBZ denotes is
T5844 1403-1412 VBN denotes conserved
T5846 1413-1415 IN denotes in
T5847 1416-1419 NN denotes rat
T5848 1419-1421 , denotes ,
T5849 1421-1426 JJ denotes human
T5850 1426-1428 , denotes ,
T5851 1428-1433 NN denotes chick
T5852 1434-1437 CC denotes and
T5853 1438-1447 NN denotes zebrafish
T5854 1447-1449 , denotes ,
T5855 1449-1454 WDT denotes which
T5856 1455-1462 VBP denotes display
T5857 1463-1465 CD denotes 91
T5858 1465-1466 NN denotes %
T5860 1466-1468 , denotes ,
T5861 1468-1470 CD denotes 70
T5862 1470-1471 NN denotes %
T5863 1471-1473 , denotes ,
T5864 1473-1475 CD denotes 36
T5865 1475-1476 NN denotes %
T5866 1477-1480 CC denotes and
T5867 1481-1483 CD denotes 26
T5868 1483-1484 NN denotes %
T5859 1485-1493 NN denotes identity
T5869 1494-1498 IN denotes with
T5870 1499-1504 NN denotes mouse
T5872 1505-1507 NN denotes mr
T5873 1507-1508 HYPH denotes -
T5871 1508-1509 NN denotes s
T5874 1509-1511 , denotes ,
T5875 1511-1523 RB denotes respectively
T5876 1524-1525 -LRB- denotes (
T5878 1525-1529 NN denotes Fig.
T5877 1530-1532 NN denotes 1D
T5879 1532-1533 -RRB- denotes )
T5880 1533-1534 . denotes .
T5881 1534-1705 sentence denotes The SAM domains of rat, human, chick and zebrafish mr-s protein are highly conserved and display 96%, 90%, 76% and 72% identity with the SAM domain of mouse mr-s protein.
T5882 1535-1538 DT denotes The
T5884 1539-1542 NN denotes SAM
T5883 1543-1550 NNS denotes domains
T5886 1551-1553 IN denotes of
T5887 1554-1557 NN denotes rat
T5889 1557-1559 , denotes ,
T5890 1559-1564 JJ denotes human
T5891 1564-1566 , denotes ,
T5892 1566-1571 NN denotes chick
T5893 1572-1575 CC denotes and
T5894 1576-1585 NN denotes zebrafish
T5895 1586-1588 NN denotes mr
T5897 1588-1589 HYPH denotes -
T5896 1589-1590 NN denotes s
T5888 1591-1598 NN denotes protein
T5898 1599-1602 VBP denotes are
T5899 1603-1609 RB denotes highly
T5885 1610-1619 VBN denotes conserved
T5900 1620-1623 CC denotes and
T5901 1624-1631 VBP denotes display
T5902 1632-1634 CD denotes 96
T5903 1634-1635 NN denotes %
T5905 1635-1637 , denotes ,
T5906 1637-1639 CD denotes 90
T5907 1639-1640 NN denotes %
T5908 1640-1642 , denotes ,
T5909 1642-1644 CD denotes 76
T5910 1644-1645 NN denotes %
T5911 1646-1649 CC denotes and
T5912 1650-1652 CD denotes 72
T5913 1652-1653 NN denotes %
T5904 1654-1662 NN denotes identity
T5914 1663-1667 IN denotes with
T5915 1668-1671 DT denotes the
T5917 1672-1675 NN denotes SAM
T5916 1676-1682 NN denotes domain
T5918 1683-1685 IN denotes of
T5919 1686-1691 NN denotes mouse
T5921 1692-1694 NN denotes mr
T5923 1694-1695 HYPH denotes -
T5922 1695-1696 NN denotes s
T5920 1697-1704 NN denotes protein
T5924 1704-1705 . denotes .
T5925 1705-1853 sentence denotes The chromosomal localizations of mouse and human mr-s genes were determined by searching the mouse and human genome databases (NCBI), respectively.
T5926 1706-1709 DT denotes The
T5928 1710-1721 JJ denotes chromosomal
T5927 1722-1735 NNS denotes localizations
T5930 1736-1738 IN denotes of
T5931 1739-1744 NN denotes mouse
T5933 1745-1748 CC denotes and
T5934 1749-1754 JJ denotes human
T5935 1755-1757 NN denotes mr
T5937 1757-1758 HYPH denotes -
T5936 1758-1759 NN denotes s
T5932 1760-1765 NNS denotes genes
T5938 1766-1770 VBD denotes were
T5929 1771-1781 VBN denotes determined
T5939 1782-1784 IN denotes by
T5940 1785-1794 VBG denotes searching
T5941 1795-1798 DT denotes the
T5943 1799-1804 NN denotes mouse
T5944 1805-1808 CC denotes and
T5945 1809-1814 JJ denotes human
T5946 1815-1821 NN denotes genome
T5942 1822-1831 NNS denotes databases
T5947 1832-1833 -LRB- denotes (
T5948 1833-1837 NN denotes NCBI
T5949 1837-1838 -RRB- denotes )
T5950 1838-1840 , denotes ,
T5951 1840-1852 RB denotes respectively
T5952 1852-1853 . denotes .
T5953 1853-1941 sentence denotes Mouse mr-s is mapped to chromosome 4E2, and human MR-S is mapped to chromosome 1p36.33.
T5954 1854-1859 NN denotes Mouse
T5956 1860-1862 NN denotes mr
T5957 1862-1863 HYPH denotes -
T5955 1863-1864 NN denotes s
T5959 1865-1867 VBZ denotes is
T5958 1868-1874 VBN denotes mapped
T5960 1875-1877 IN denotes to
T5961 1878-1888 NN denotes chromosome
T5962 1889-1892 NN denotes 4E2
T5963 1892-1894 , denotes ,
T5964 1894-1897 CC denotes and
T5965 1898-1903 JJ denotes human
T5967 1904-1906 NN denotes MR
T5968 1906-1907 HYPH denotes -
T5966 1907-1908 NN denotes S
T5970 1909-1911 VBZ denotes is
T5969 1912-1918 VBN denotes mapped
T5971 1919-1921 IN denotes to
T5972 1922-1932 NN denotes chromosome
T5973 1933-1940 NN denotes 1p36.33
T5974 1940-1941 . denotes .
T5975 1941-2004 sentence denotes LCA is the most common cause of inherited childhood blindness.
T5976 1942-1945 NN denotes LCA
T5977 1946-1948 VBZ denotes is
T5978 1949-1952 DT denotes the
T5980 1953-1957 RBS denotes most
T5981 1958-1964 JJ denotes common
T5979 1965-1970 NN denotes cause
T5982 1971-1973 IN denotes of
T5983 1974-1983 VBN denotes inherited
T5985 1984-1993 NN denotes childhood
T5984 1994-2003 NN denotes blindness
T5986 2003-2004 . denotes .
T5987 2004-2105 sentence denotes Human MR-S maps in the vicinity region of the LCA9, recently identified as a new locus for LCA [33].
T5988 2005-2010 JJ denotes Human
T5990 2011-2013 NN denotes MR
T5991 2013-2014 HYPH denotes -
T5989 2014-2015 NN denotes S
T5992 2016-2020 VBZ denotes maps
T5993 2021-2023 IN denotes in
T5994 2024-2027 DT denotes the
T5996 2028-2036 NN denotes vicinity
T5995 2037-2043 NN denotes region
T5997 2044-2046 IN denotes of
T5998 2047-2050 DT denotes the
T5999 2051-2055 NN denotes LCA9
T6000 2055-2057 , denotes ,
T6001 2057-2065 RB denotes recently
T6002 2066-2076 VBN denotes identified
T6003 2077-2079 IN denotes as
T6004 2080-2081 DT denotes a
T6006 2082-2085 JJ denotes new
T6005 2086-2091 NN denotes locus
T6007 2092-2095 IN denotes for
T6008 2096-2099 NN denotes LCA
T6009 2100-2101 -LRB- denotes [
T6010 2101-2103 CD denotes 33
T6011 2103-2104 -RRB- denotes ]
T6012 2104-2105 . denotes .
R1271 T5553 T5554 prep In,screened
R1272 T5555 T5553 pobj order,In
R1273 T5556 T5557 aux to,identify
R1274 T5557 T5555 acl identify,order
R1275 T5558 T5559 amod novel,genes
R1276 T5559 T5557 dobj genes,identify
R1277 T5560 T5559 compound mouse,genes
R1278 T5561 T5562 advmod preferentially,expressed
R1279 T5562 T5559 acl expressed,genes
R1280 T5563 T5562 prep in,expressed
R1281 T5564 T5565 det the,retina
R1282 T5565 T5563 pobj retina,in
R1283 T5566 T5565 amod developing,retina
R1284 T5567 T5554 punct ", ",screened
R1285 T5568 T5554 nsubj we,screened
R1286 T5569 T5570 det the,database
R1287 T5570 T5554 dobj database,screened
R1288 T5571 T5572 nmod National,Institute
R1289 T5572 T5570 nmod Institute,database
R1290 T5573 T5572 prep for,Institute
R1291 T5574 T5575 compound Biotechnology,Information
R1292 T5575 T5573 pobj Information,for
R1293 T5576 T5572 punct (,Institute
R1294 T5577 T5572 appos NCBI,Institute
R1295 T5578 T5570 punct ),database
R1296 T5579 T5570 punct ", ",database
R1297 T5580 T5570 appos UniGene,database
R1298 T5581 T5554 punct ", ",screened
R1299 T5582 T5554 advcl using,screened
R1300 T5583 T5584 compound Digital,Display
R1301 T5584 T5582 dobj Display,using
R1302 T5585 T5584 compound Differential,Display
R1303 T5586 T5584 punct (,Display
R1304 T5587 T5584 appos DDD,Display
R1305 T5588 T5554 punct ),screened
R1306 T5589 T5554 cc and,screened
R1307 T5590 T5554 conj found,screened
R1308 T5591 T5592 compound EST,fragments
R1309 T5592 T5590 dobj fragments,found
R1310 T5593 T5594 dep which,are
R1311 T5594 T5592 relcl are,fragments
R1312 T5595 T5594 advmod frequently,are
R1313 T5596 T5594 acomp present,are
R1314 T5597 T5594 prep in,are
R1315 T5598 T5599 nmod mouse,libraries
R1316 T5599 T5597 pobj libraries,in
R1317 T5600 T5599 amod retinal,libraries
R1318 T5601 T5599 compound cDNA,libraries
R1319 T5602 T5554 punct .,screened
R1320 T5604 T5605 nsubj We,found
R1321 T5606 T5607 mark that,encodes
R1322 T5607 T5605 ccomp encodes,found
R1323 T5608 T5609 nummod one,clone
R1324 T5609 T5607 nsubj clone,encodes
R1325 T5610 T5609 prep in,clone
R1326 T5611 T5612 det these,cDNAs
R1327 T5612 T5610 pobj cDNAs,in
R1328 T5613 T5614 det a,protein
R1329 T5614 T5607 dobj protein,encodes
R1330 T5615 T5614 acl containing,protein
R1331 T5616 T5617 det a,domain
R1332 T5617 T5615 dobj domain,containing
R1333 T5618 T5617 compound SAM,domain
R1334 T5619 T5617 acl related,domain
R1335 T5620 T5619 prep to,related
R1336 T5621 T5620 pobj that,to
R1337 T5622 T5621 prep of,that
R1338 T5623 T5624 amod polyhomeotic,protein
R1339 T5624 T5622 pobj protein,of
R1340 T5625 T5605 punct .,found
R1341 T5627 T5628 det A,fragment
R1342 T5628 T5630 nsubjpass fragment,used
R1343 T5629 T5628 compound PCR,fragment
R1344 T5631 T5628 acl corresponding,fragment
R1345 T5632 T5631 prep to,corresponding
R1346 T5633 T5634 det this,clone
R1347 T5634 T5632 pobj clone,to
R1348 T5635 T5634 compound mouse,clone
R1349 T5636 T5630 auxpass was,used
R1350 T5637 T5638 aux to,screen
R1351 T5638 T5630 advcl screen,used
R1352 T5639 T5640 det a,library
R1353 T5640 T5638 dobj library,screen
R1354 T5641 T5640 nmod mouse,library
R1355 T5642 T5643 nmod P0,P3
R1356 T5643 T5640 nmod P3,library
R1357 T5644 T5643 punct -,P3
R1358 T5645 T5640 amod retinal,library
R1359 T5646 T5640 compound cDNA,library
R1360 T5647 T5648 aux to,obtain
R1361 T5648 T5638 advcl obtain,screen
R1362 T5649 T5650 det a,clone
R1363 T5650 T5648 dobj clone,obtain
R1364 T5651 T5652 amod full,length
R1365 T5652 T5650 compound length,clone
R1366 T5653 T5652 punct -,length
R1367 T5654 T5650 compound cDNA,clone
R1368 T5655 T5630 punct .,used
R1369 T5657 T5658 compound Sequence,analysis
R1370 T5658 T5659 nsubj analysis,showed
R1371 T5660 T5661 mark that,was
R1372 T5661 T5659 ccomp was,showed
R1373 T5662 T5663 det this,cDNA
R1374 T5663 T5661 nsubj cDNA,was
R1375 T5664 T5665 det a,gene
R1376 T5665 T5661 attr gene,was
R1377 T5666 T5665 amod novel,gene
R1378 T5667 T5665 acl encoding,gene
R1379 T5668 T5669 det a,protein
R1380 T5669 T5667 dobj protein,encoding
R1381 T5670 T5671 compound SAM,domain
R1382 T5671 T5672 npadvmod domain,containing
R1383 T5672 T5669 amod containing,protein
R1384 T5673 T5672 punct -,containing
R1385 T5674 T5659 punct .,showed
R1386 T5676 T5677 nsubj We,referred
R1387 T5678 T5677 prep to,referred
R1388 T5679 T5680 det this,protein
R1389 T5680 T5678 pobj protein,to
R1390 T5681 T5677 prep as,referred
R1391 T5682 T5683 compound mr,s
R1392 T5683 T5681 pobj s,as
R1393 T5684 T5683 punct -,s
R1394 T5685 T5683 punct (,s
R1395 T5686 T5687 amod major,protein
R1396 T5687 T5683 appos protein,s
R1397 T5688 T5687 amod retinal,protein
R1398 T5689 T5690 compound SAM,domain
R1399 T5690 T5687 compound domain,protein
R1400 T5691 T5677 punct ),referred
R1401 T5692 T5677 punct .,referred
R1402 T5694 T5695 mark As,shown
R1403 T5695 T5696 advcl shown,is
R1404 T5697 T5695 prep in,shown
R1405 T5698 T5699 compound Fig.,1A
R1406 T5699 T5697 pobj 1A,in
R1407 T5700 T5696 punct ", ",is
R1408 T5701 T5702 det a,codon
R1409 T5702 T5696 nsubj codon,is
R1410 T5703 T5702 compound translation,codon
R1411 T5704 T5702 compound initiation,codon
R1412 T5705 T5696 acomp present,is
R1413 T5706 T5696 prep in,is
R1414 T5707 T5708 det the,frame
R1415 T5708 T5706 pobj frame,in
R1416 T5709 T5708 amod same,frame
R1417 T5710 T5708 amod open,frame
R1418 T5711 T5708 compound reading,frame
R1419 T5712 T5708 prep as,frame
R1420 T5713 T5714 det the,domain
R1421 T5714 T5712 pobj domain,as
R1422 T5715 T5714 compound SAM,domain
R1423 T5716 T5696 punct .,is
R1424 T5718 T5719 det This,site
R1425 T5719 T5721 nsubj site,shows
R1426 T5720 T5719 compound initiation,site
R1427 T5722 T5721 dobj similarity,shows
R1428 T5723 T5722 prep to,similarity
R1429 T5724 T5725 det the,sequence
R1430 T5725 T5723 pobj sequence,to
R1431 T5726 T5725 compound consensus,sequence
R1432 T5727 T5725 acl proposed,sequence
R1433 T5728 T5727 agent by,proposed
R1434 T5729 T5728 pobj Kozak,by
R1435 T5730 T5731 punct [,32
R1436 T5731 T5729 parataxis 32,Kozak
R1437 T5732 T5731 punct ],32
R1438 T5733 T5725 prep including,sequence
R1439 T5734 T5735 det the,presence
R1440 T5735 T5733 pobj presence,including
R1441 T5736 T5735 prep of,presence
R1442 T5737 T5738 det the,purine
R1443 T5738 T5736 pobj purine,of
R1444 T5739 T5740 advmod highly,conserved
R1445 T5740 T5738 amod conserved,purine
R1446 T5741 T5735 prep at,presence
R1447 T5742 T5741 pobj position,at
R1448 T5743 T5742 punct -,position
R1449 T5744 T5742 nummod 3,position
R1450 T5745 T5721 punct .,shows
R1451 T5747 T5748 det The,codon
R1452 T5748 T5750 nsubjpass codon,indicated
R1453 T5749 T5748 compound stop,codon
R1454 T5751 T5748 prep of,codon
R1455 T5752 T5753 det the,protein
R1456 T5753 T5751 pobj protein,of
R1457 T5754 T5753 amod predicted,protein
R1458 T5755 T5756 compound mr,s
R1459 T5756 T5753 compound s,protein
R1460 T5757 T5756 punct -,s
R1461 T5758 T5750 auxpass is,indicated
R1462 T5759 T5750 advmod also,indicated
R1463 T5760 T5750 prep in,indicated
R1464 T5761 T5762 compound Fig.,1A
R1465 T5762 T5760 pobj 1A,in
R1466 T5763 T5750 punct .,indicated
R1467 T5765 T5766 det The,sequence
R1468 T5766 T5769 nsubj sequence,exhibits
R1469 T5767 T5768 compound amino,acid
R1470 T5768 T5766 compound acid,sequence
R1471 T5770 T5766 prep of,sequence
R1472 T5771 T5772 det the,domain
R1473 T5772 T5770 pobj domain,of
R1474 T5773 T5772 compound SAM,domain
R1475 T5774 T5772 prep of,domain
R1476 T5775 T5776 compound mr,s
R1477 T5776 T5778 compound s,protein
R1478 T5777 T5776 punct -,s
R1479 T5778 T5774 pobj protein,of
R1480 T5779 T5780 punct (,1A
R1481 T5780 T5766 parataxis 1A,sequence
R1482 T5781 T5780 compound Fig.,1A
R1483 T5782 T5780 punct ", ",1A
R1484 T5783 T5784 amod boxed,sequence
R1485 T5784 T5780 appos sequence,1A
R1486 T5785 T5780 punct ),1A
R1487 T5786 T5769 dobj homology,exhibits
R1488 T5787 T5786 prep with,homology
R1489 T5788 T5789 compound SAM,domains
R1490 T5789 T5787 pobj domains,with
R1491 T5790 T5789 prep of,domains
R1492 T5791 T5790 pobj EphB2,of
R1493 T5792 T5791 punct ", ",EphB2
R1494 T5793 T5791 conj EphA4,EphB2
R1495 T5794 T5793 punct ", ",EphA4
R1496 T5795 T5793 conj MPH1,EphA4
R1497 T5796 T5795 punct ", ",MPH1
R1498 T5797 T5795 conj TEL,MPH1
R1499 T5798 T5797 cc and,TEL
R1500 T5799 T5797 conj Smaug,TEL
R1501 T5800 T5801 punct (,1B
R1502 T5801 T5769 parataxis 1B,exhibits
R1503 T5802 T5801 compound Fig.,1B
R1504 T5803 T5801 punct ),1B
R1505 T5804 T5769 punct .,exhibits
R1506 T5806 T5807 prep By,related
R1507 T5808 T5809 amod phylogenetic,analysis
R1508 T5809 T5806 pobj analysis,By
R1509 T5810 T5807 punct ", ",related
R1510 T5811 T5812 det the,domain
R1511 T5812 T5807 nsubjpass domain,related
R1512 T5813 T5812 compound SAM,domain
R1513 T5814 T5812 prep of,domain
R1514 T5815 T5816 compound mr,s
R1515 T5816 T5814 pobj s,of
R1516 T5817 T5816 punct -,s
R1517 T5818 T5807 auxpass is,related
R1518 T5819 T5820 advmod most,closely
R1519 T5820 T5807 advmod closely,related
R1520 T5821 T5807 prep to,related
R1521 T5822 T5821 pobj that,to
R1522 T5823 T5822 prep of,that
R1523 T5824 T5825 compound Mph1,Rae28
R1524 T5825 T5823 pobj Rae28,of
R1525 T5826 T5825 punct /,Rae28
R1526 T5827 T5825 punct ", ",Rae28
R1527 T5828 T5829 det a,homolog
R1528 T5829 T5825 appos homolog,Rae28
R1529 T5830 T5829 compound mouse,homolog
R1530 T5831 T5829 prep of,homolog
R1531 T5832 T5831 pobj ph,of
R1532 T5833 T5834 punct (,1C
R1533 T5834 T5807 parataxis 1C,related
R1534 T5835 T5834 compound Fig.,1C
R1535 T5836 T5834 punct ),1C
R1536 T5837 T5807 punct .,related
R1537 T5839 T5840 compound Mouse,protein
R1538 T5840 T5844 nsubjpass protein,conserved
R1539 T5841 T5842 compound mr,s
R1540 T5842 T5840 compound s,protein
R1541 T5843 T5842 punct -,s
R1542 T5845 T5844 auxpass is,conserved
R1543 T5846 T5844 prep in,conserved
R1544 T5847 T5846 pobj rat,in
R1545 T5848 T5847 punct ", ",rat
R1546 T5849 T5847 amod human,rat
R1547 T5850 T5847 punct ", ",rat
R1548 T5851 T5847 conj chick,rat
R1549 T5852 T5851 cc and,chick
R1550 T5853 T5851 conj zebrafish,chick
R1551 T5854 T5847 punct ", ",rat
R1552 T5855 T5856 dep which,display
R1553 T5856 T5847 relcl display,rat
R1554 T5857 T5858 nummod 91,%
R1555 T5858 T5859 nmod %,identity
R1556 T5859 T5856 dobj identity,display
R1557 T5860 T5858 punct ", ",%
R1558 T5861 T5862 nummod 70,%
R1559 T5862 T5858 conj %,%
R1560 T5863 T5862 punct ", ",%
R1561 T5864 T5865 nummod 36,%
R1562 T5865 T5862 conj %,%
R1563 T5866 T5865 cc and,%
R1564 T5867 T5868 nummod 26,%
R1565 T5868 T5865 conj %,%
R1566 T5869 T5859 prep with,identity
R1567 T5870 T5871 compound mouse,s
R1568 T5871 T5869 pobj s,with
R1569 T5872 T5871 compound mr,s
R1570 T5873 T5871 punct -,s
R1571 T5874 T5856 punct ", ",display
R1572 T5875 T5856 advmod respectively,display
R1573 T5876 T5877 punct (,1D
R1574 T5877 T5844 parataxis 1D,conserved
R1575 T5878 T5877 compound Fig.,1D
R1576 T5879 T5877 punct ),1D
R1577 T5880 T5844 punct .,conserved
R1578 T5882 T5883 det The,domains
R1579 T5883 T5885 nsubjpass domains,conserved
R1580 T5884 T5883 compound SAM,domains
R1581 T5886 T5883 prep of,domains
R1582 T5887 T5888 nmod rat,protein
R1583 T5888 T5886 pobj protein,of
R1584 T5889 T5887 punct ", ",rat
R1585 T5890 T5887 amod human,rat
R1586 T5891 T5887 punct ", ",rat
R1587 T5892 T5887 conj chick,rat
R1588 T5893 T5892 cc and,chick
R1589 T5894 T5892 conj zebrafish,chick
R1590 T5895 T5896 compound mr,s
R1591 T5896 T5888 compound s,protein
R1592 T5897 T5896 punct -,s
R1593 T5898 T5885 auxpass are,conserved
R1594 T5899 T5885 advmod highly,conserved
R1595 T5900 T5885 cc and,conserved
R1596 T5901 T5885 conj display,conserved
R1597 T5902 T5903 nummod 96,%
R1598 T5903 T5904 nmod %,identity
R1599 T5904 T5901 dobj identity,display
R1600 T5905 T5903 punct ", ",%
R1601 T5906 T5907 nummod 90,%
R1602 T5907 T5903 conj %,%
R1603 T5908 T5907 punct ", ",%
R1604 T5909 T5910 nummod 76,%
R1605 T5910 T5907 conj %,%
R1606 T5911 T5910 cc and,%
R1607 T5912 T5913 nummod 72,%
R1608 T5913 T5910 conj %,%
R1609 T5914 T5904 prep with,identity
R1610 T5915 T5916 det the,domain
R1611 T5916 T5914 pobj domain,with
R1612 T5917 T5916 compound SAM,domain
R1613 T5918 T5916 prep of,domain
R1614 T5919 T5920 compound mouse,protein
R1615 T5920 T5918 pobj protein,of
R1616 T5921 T5922 compound mr,s
R1617 T5922 T5920 compound s,protein
R1618 T5923 T5922 punct -,s
R1619 T5924 T5885 punct .,conserved
R1620 T5926 T5927 det The,localizations
R1621 T5927 T5929 nsubjpass localizations,determined
R1622 T5928 T5927 amod chromosomal,localizations
R1623 T5930 T5927 prep of,localizations
R1624 T5931 T5932 nmod mouse,genes
R1625 T5932 T5930 pobj genes,of
R1626 T5933 T5931 cc and,mouse
R1627 T5934 T5931 conj human,mouse
R1628 T5935 T5936 compound mr,s
R1629 T5936 T5932 compound s,genes
R1630 T5937 T5936 punct -,s
R1631 T5938 T5929 auxpass were,determined
R1632 T5939 T5929 prep by,determined
R1633 T5940 T5939 pcomp searching,by
R1634 T5941 T5942 det the,databases
R1635 T5942 T5940 dobj databases,searching
R1636 T5943 T5942 nmod mouse,databases
R1637 T5944 T5943 cc and,mouse
R1638 T5945 T5943 conj human,mouse
R1639 T5946 T5942 compound genome,databases
R1640 T5947 T5948 punct (,NCBI
R1641 T5948 T5942 parataxis NCBI,databases
R1642 T5949 T5948 punct ),NCBI
R1643 T5950 T5940 punct ", ",searching
R1644 T5951 T5940 advmod respectively,searching
R1645 T5952 T5929 punct .,determined
R1646 T5954 T5955 compound Mouse,s
R1647 T5955 T5958 nsubjpass s,mapped
R1648 T5956 T5955 compound mr,s
R1649 T5957 T5955 punct -,s
R1650 T5959 T5958 auxpass is,mapped
R1651 T5960 T5958 prep to,mapped
R1652 T5961 T5962 compound chromosome,4E2
R1653 T5962 T5960 pobj 4E2,to
R1654 T5963 T5958 punct ", ",mapped
R1655 T5964 T5958 cc and,mapped
R1656 T5965 T5966 amod human,S
R1657 T5966 T5969 nsubjpass S,mapped
R1658 T5967 T5966 compound MR,S
R1659 T5968 T5966 punct -,S
R1660 T5969 T5958 conj mapped,mapped
R1661 T5970 T5969 auxpass is,mapped
R1662 T5971 T5969 prep to,mapped
R1663 T5972 T5973 compound chromosome,1p36.33
R1664 T5973 T5971 pobj 1p36.33,to
R1665 T5974 T5969 punct .,mapped
R1666 T5976 T5977 nsubj LCA,is
R1667 T5978 T5979 det the,cause
R1668 T5979 T5977 attr cause,is
R1669 T5980 T5981 advmod most,common
R1670 T5981 T5979 amod common,cause
R1671 T5982 T5979 prep of,cause
R1672 T5983 T5984 amod inherited,blindness
R1673 T5984 T5982 pobj blindness,of
R1674 T5985 T5984 compound childhood,blindness
R1675 T5986 T5977 punct .,is
R1676 T5988 T5989 amod Human,S
R1677 T5989 T5992 nsubj S,maps
R1678 T5990 T5989 compound MR,S
R1679 T5991 T5989 punct -,S
R1680 T5993 T5992 prep in,maps
R1681 T5994 T5995 det the,region
R1682 T5995 T5993 pobj region,in
R1683 T5996 T5995 compound vicinity,region
R1684 T5997 T5995 prep of,region
R1685 T5998 T5999 det the,LCA9
R1686 T5999 T5997 pobj LCA9,of
R1687 T6000 T5999 punct ", ",LCA9
R1688 T6001 T6002 advmod recently,identified
R1689 T6002 T5999 acl identified,LCA9
R1690 T6003 T6002 prep as,identified
R1691 T6004 T6005 det a,locus
R1692 T6005 T6003 pobj locus,as
R1693 T6006 T6005 amod new,locus
R1694 T6007 T6005 prep for,locus
R1695 T6008 T6007 pobj LCA,for
R1696 T6009 T6010 punct [,33
R1697 T6010 T5992 parataxis 33,maps
R1698 T6011 T6010 punct ],33
R1699 T6012 T5992 punct .,maps