PMC:1382200 / 29604-30642 JSONTXT 4 Projects

Annnotations TAB TSV DIC JSON TextAE

Id Subject Object Predicate Lexical cue
T16017 0-3 DT denotes The
T16019 4-9 NN denotes mouse
T16020 10-15 NN denotes Capn2
T16018 16-20 NN denotes gene
T16021 21-28 VBZ denotes encodes
T16022 29-32 DT denotes the
T16024 33-36 CD denotes 700
T16025 37-42 NN denotes amino
T16023 43-48 NNS denotes acids
T16026 49-51 IN denotes of
T16027 52-55 DT denotes the
T16029 56-57 NN denotes m
T16031 57-58 HYPH denotes -
T16030 58-65 NN denotes calpain
T16032 66-71 JJ denotes large
T16028 72-79 NN denotes subunit
T16033 80-81 -LRB- denotes (
T16035 81-82 NN denotes m
T16036 82-83 HYPH denotes -
T16037 83-85 CD denotes 80
T16034 86-87 NN denotes k
T16038 87-88 -RRB- denotes )
T16039 89-92 CC denotes and
T16040 93-101 VBZ denotes consists
T16041 102-104 IN denotes of
T16042 105-107 CD denotes 21
T16043 108-113 NNS denotes exons
T16044 114-123 VBG denotes extending
T16045 124-128 IN denotes over
T16046 129-131 CD denotes 50
T16048 131-132 HYPH denotes -
T16047 132-134 NN denotes kb
T16049 135-137 IN denotes on
T16050 138-148 NN denotes chromosome
T16051 149-150 CD denotes 1
T16052 150-151 . denotes .
T16053 151-283 sentence denotes A cDNA clone encoding a portion of the mouse m-80 k subunit was purchased (dbEST Id, 807416, Image:606689, Image Consortium, LLNL).
T16054 152-153 DT denotes A
T16056 154-158 NN denotes cDNA
T16055 159-164 NN denotes clone
T16058 165-173 VBG denotes encoding
T16059 174-175 DT denotes a
T16060 176-183 NN denotes portion
T16061 184-186 IN denotes of
T16062 187-190 DT denotes the
T16064 191-196 NN denotes mouse
T16065 197-198 NN denotes m
T16067 198-199 HYPH denotes -
T16068 199-201 CD denotes 80
T16066 202-203 NN denotes k
T16063 204-211 NN denotes subunit
T16069 212-215 VBD denotes was
T16057 216-225 VBN denotes purchased
T16070 226-227 -LRB- denotes (
T16072 227-232 NN denotes dbEST
T16073 233-235 NN denotes Id
T16074 235-237 , denotes ,
T16075 237-243 CD denotes 807416
T16076 243-245 , denotes ,
T16077 245-250 NNP denotes Image
T16078 250-251 : denotes :
T16079 251-257 CD denotes 606689
T16080 257-259 , denotes ,
T16081 259-264 NNP denotes Image
T16082 265-275 NNP denotes Consortium
T16083 275-277 , denotes ,
T16071 277-281 NNP denotes LLNL
T16084 281-282 -RRB- denotes )
T16085 282-283 . denotes .
T16086 283-446 sentence denotes It was found to contain 2.8-kb of sequence from position 247 of the coding sequence to the stop codon at position 2,101, including the 3'-UTR to the polyA signal.
T16087 284-286 PRP denotes It
T16089 287-290 VBD denotes was
T16088 291-296 VBN denotes found
T16090 297-299 TO denotes to
T16091 300-307 VB denotes contain
T16092 308-311 CD denotes 2.8
T16094 311-312 HYPH denotes -
T16093 312-314 NN denotes kb
T16095 315-317 IN denotes of
T16096 318-326 NN denotes sequence
T16097 327-331 IN denotes from
T16098 332-340 NN denotes position
T16099 341-344 CD denotes 247
T16100 345-347 IN denotes of
T16101 348-351 DT denotes the
T16103 352-358 NN denotes coding
T16102 359-367 NN denotes sequence
T16104 368-370 IN denotes to
T16105 371-374 DT denotes the
T16107 375-379 NN denotes stop
T16106 380-385 NN denotes codon
T16108 386-388 IN denotes at
T16109 389-397 NN denotes position
T16110 398-403 CD denotes 2,101
T16111 403-405 , denotes ,
T16112 405-414 IN denotes including
T16113 415-418 DT denotes the
T16115 419-420 CD denotes 3
T16116 420-421 SYM denotes '
T16117 421-422 HYPH denotes -
T16114 422-425 NN denotes UTR
T16118 426-428 IN denotes to
T16119 429-432 DT denotes the
T16121 433-438 NN denotes polyA
T16120 439-445 NN denotes signal
T16122 445-446 . denotes .
T16123 446-547 sentence denotes A fragment of this cDNA was subcloned and used to screen a 129Sv mouse genomic library in λ-Dash II.
T16124 447-448 DT denotes A
T16125 449-457 NN denotes fragment
T16127 458-460 IN denotes of
T16128 461-465 DT denotes this
T16129 466-470 NN denotes cDNA
T16130 471-474 VBD denotes was
T16126 475-484 VBN denotes subcloned
T16131 485-488 CC denotes and
T16132 489-493 VBN denotes used
T16133 494-496 TO denotes to
T16134 497-503 VB denotes screen
T16135 504-505 DT denotes a
T16137 506-511 CD denotes 129Sv
T16138 512-517 NN denotes mouse
T16139 518-525 JJ denotes genomic
T16136 526-533 NN denotes library
T16140 534-536 IN denotes in
T16141 537-538 NN denotes λ
T16143 538-539 HYPH denotes -
T16142 539-543 NN denotes Dash
T16144 544-546 CD denotes II
T16145 546-547 . denotes .
T16146 547-678 sentence denotes Overlapping genomic clones were obtained covering 15,354 bp, extending from a BamHI site in intron 3 to a BamHI site in intron 15.
T16147 548-559 VBG denotes Overlapping
T16149 560-567 JJ denotes genomic
T16148 568-574 NNS denotes clones
T16151 575-579 VBD denotes were
T16150 580-588 VBN denotes obtained
T16152 589-597 VBG denotes covering
T16153 598-604 CD denotes 15,354
T16154 605-607 NN denotes bp
T16155 607-609 , denotes ,
T16156 609-618 VBG denotes extending
T16157 619-623 IN denotes from
T16158 624-625 DT denotes a
T16160 626-631 NN denotes BamHI
T16159 632-636 NN denotes site
T16161 637-639 IN denotes in
T16162 640-646 NN denotes intron
T16163 647-648 CD denotes 3
T16164 649-651 IN denotes to
T16165 652-653 DT denotes a
T16167 654-659 NN denotes BamHI
T16166 660-664 NN denotes site
T16168 665-667 IN denotes in
T16169 668-674 NN denotes intron
T16170 675-677 CD denotes 15
T16171 677-678 . denotes .
T16172 678-798 sentence denotes These clones were sequenced completely on both strands and the data were submitted to GenBank (accession no. AF497625).
T16173 679-684 DT denotes These
T16174 685-691 NNS denotes clones
T16176 692-696 VBD denotes were
T16175 697-706 VBN denotes sequenced
T16177 707-717 RB denotes completely
T16178 718-720 IN denotes on
T16179 721-725 DT denotes both
T16180 726-733 NNS denotes strands
T16181 734-737 CC denotes and
T16182 738-741 DT denotes the
T16183 742-746 NNS denotes data
T16185 747-751 VBD denotes were
T16184 752-761 VBN denotes submitted
T16186 762-764 IN denotes to
T16187 765-772 NNP denotes GenBank
T16188 773-774 -LRB- denotes (
T16190 774-783 NN denotes accession
T16191 784-787 NN denotes no.
T16189 788-796 NN denotes AF497625
T16192 796-797 -RRB- denotes )
T16193 797-798 . denotes .
T16194 798-1038 sentence denotes The submitted sequences agreed precisely with the public databases, and also filled in several small gaps corresponding to short repetitive sequences which could only be firmly established by repeated sequencing in non-standard conditions.
T16195 799-802 DT denotes The
T16197 803-812 VBN denotes submitted
T16196 813-822 NNS denotes sequences
T16198 823-829 VBD denotes agreed
T16199 830-839 RB denotes precisely
T16200 840-844 IN denotes with
T16201 845-848 DT denotes the
T16203 849-855 JJ denotes public
T16202 856-865 NNS denotes databases
T16204 865-867 , denotes ,
T16205 867-870 CC denotes and
T16206 871-875 RB denotes also
T16207 876-882 VBN denotes filled
T16208 883-885 RP denotes in
T16209 886-893 JJ denotes several
T16211 894-899 JJ denotes small
T16210 900-904 NNS denotes gaps
T16212 905-918 VBG denotes corresponding
T16213 919-921 IN denotes to
T16214 922-927 JJ denotes short
T16216 928-938 JJ denotes repetitive
T16215 939-948 NNS denotes sequences
T16217 949-954 WDT denotes which
T16219 955-960 MD denotes could
T16220 961-965 RB denotes only
T16221 966-968 VB denotes be
T16222 969-975 RB denotes firmly
T16218 976-987 VBN denotes established
T16223 988-990 IN denotes by
T16224 991-999 VBN denotes repeated
T16225 1000-1010 NN denotes sequencing
T16226 1011-1013 IN denotes in
T16227 1014-1026 JJ denotes non-standard
T16228 1027-1037 NNS denotes conditions
T16229 1037-1038 . denotes .
R4712 T16017 T16018 det The,gene
R4713 T16018 T16021 nsubj gene,encodes
R4714 T16019 T16018 compound mouse,gene
R4715 T16020 T16018 compound Capn2,gene
R4716 T16022 T16023 det the,acids
R4717 T16023 T16021 dobj acids,encodes
R4718 T16024 T16023 nummod 700,acids
R4719 T16025 T16023 compound amino,acids
R4720 T16026 T16023 prep of,acids
R4721 T16027 T16028 det the,subunit
R4722 T16028 T16026 pobj subunit,of
R4723 T16029 T16030 nmod m,calpain
R4724 T16030 T16028 nmod calpain,subunit
R4725 T16031 T16030 punct -,calpain
R4726 T16032 T16028 amod large,subunit
R4727 T16033 T16034 punct (,k
R4728 T16034 T16028 parataxis k,subunit
R4729 T16035 T16034 nmod m,k
R4730 T16036 T16034 punct -,k
R4731 T16037 T16034 nummod 80,k
R4732 T16038 T16034 punct ),k
R4733 T16039 T16021 cc and,encodes
R4734 T16040 T16021 conj consists,encodes
R4735 T16041 T16040 prep of,consists
R4736 T16042 T16043 nummod 21,exons
R4737 T16043 T16041 pobj exons,of
R4738 T16044 T16043 acl extending,exons
R4739 T16045 T16044 prep over,extending
R4740 T16046 T16047 nummod 50,kb
R4741 T16047 T16045 pobj kb,over
R4742 T16048 T16047 punct -,kb
R4743 T16049 T16044 prep on,extending
R4744 T16050 T16049 pobj chromosome,on
R4745 T16051 T16050 nummod 1,chromosome
R4746 T16052 T16021 punct .,encodes
R4747 T16054 T16055 det A,clone
R4748 T16055 T16057 nsubjpass clone,purchased
R4749 T16056 T16055 compound cDNA,clone
R4750 T16058 T16055 acl encoding,clone
R4751 T16059 T16060 det a,portion
R4752 T16060 T16058 dobj portion,encoding
R4753 T16061 T16060 prep of,portion
R4754 T16062 T16063 det the,subunit
R4755 T16063 T16061 pobj subunit,of
R4756 T16064 T16063 nmod mouse,subunit
R4757 T16065 T16066 nmod m,k
R4758 T16066 T16063 compound k,subunit
R4759 T16067 T16066 punct -,k
R4760 T16068 T16066 nummod 80,k
R4761 T16069 T16057 auxpass was,purchased
R4762 T16070 T16071 punct (,LLNL
R4763 T16071 T16057 parataxis LLNL,purchased
R4764 T16072 T16073 compound dbEST,Id
R4765 T16073 T16071 dep Id,LLNL
R4766 T16074 T16071 punct ", ",LLNL
R4767 T16075 T16071 dep 807416,LLNL
R4768 T16076 T16071 punct ", ",LLNL
R4769 T16077 T16071 dep Image,LLNL
R4770 T16078 T16071 punct :,LLNL
R4771 T16079 T16071 dep 606689,LLNL
R4772 T16080 T16071 punct ", ",LLNL
R4773 T16081 T16082 compound Image,Consortium
R4774 T16082 T16071 dep Consortium,LLNL
R4775 T16083 T16071 punct ", ",LLNL
R4776 T16084 T16071 punct ),LLNL
R4777 T16085 T16057 punct .,purchased
R4778 T16087 T16088 nsubjpass It,found
R4779 T16089 T16088 auxpass was,found
R4780 T16090 T16091 aux to,contain
R4781 T16091 T16088 xcomp contain,found
R4782 T16092 T16093 nummod 2.8,kb
R4783 T16093 T16091 dobj kb,contain
R4784 T16094 T16093 punct -,kb
R4785 T16095 T16093 prep of,kb
R4786 T16096 T16095 pobj sequence,of
R4787 T16097 T16096 prep from,sequence
R4788 T16098 T16097 pobj position,from
R4789 T16099 T16098 nummod 247,position
R4790 T16100 T16098 prep of,position
R4791 T16101 T16102 det the,sequence
R4792 T16102 T16100 pobj sequence,of
R4793 T16103 T16102 compound coding,sequence
R4794 T16104 T16097 prep to,from
R4795 T16105 T16106 det the,codon
R4796 T16106 T16104 pobj codon,to
R4797 T16107 T16106 compound stop,codon
R4798 T16108 T16106 prep at,codon
R4799 T16109 T16108 pobj position,at
R4800 T16110 T16109 nummod "2,101",position
R4801 T16111 T16096 punct ", ",sequence
R4802 T16112 T16096 prep including,sequence
R4803 T16113 T16114 det the,UTR
R4804 T16114 T16112 pobj UTR,including
R4805 T16115 T16114 nummod 3,UTR
R4806 T16116 T16115 punct ',3
R4807 T16117 T16114 punct -,UTR
R4808 T16118 T16114 prep to,UTR
R4809 T16119 T16120 det the,signal
R4810 T16120 T16118 pobj signal,to
R4811 T16121 T16120 compound polyA,signal
R4812 T16122 T16088 punct .,found
R4813 T16124 T16125 det A,fragment
R4814 T16125 T16126 nsubjpass fragment,subcloned
R4815 T16127 T16125 prep of,fragment
R4816 T16128 T16129 det this,cDNA
R4817 T16129 T16127 pobj cDNA,of
R4818 T16130 T16126 auxpass was,subcloned
R4819 T16131 T16126 cc and,subcloned
R4820 T16132 T16126 conj used,subcloned
R4821 T16133 T16134 aux to,screen
R4822 T16134 T16132 advcl screen,used
R4823 T16135 T16136 det a,library
R4824 T16136 T16134 dobj library,screen
R4825 T16137 T16136 nummod 129Sv,library
R4826 T16138 T16136 nmod mouse,library
R4827 T16139 T16136 amod genomic,library
R4828 T16140 T16134 prep in,screen
R4829 T16141 T16142 compound λ,Dash
R4830 T16142 T16140 pobj Dash,in
R4831 T16143 T16142 punct -,Dash
R4832 T16144 T16142 nummod II,Dash
R4833 T16145 T16126 punct .,subcloned
R4834 T16147 T16148 amod Overlapping,clones
R4835 T16148 T16150 nsubjpass clones,obtained
R4836 T16149 T16148 amod genomic,clones
R4837 T16151 T16150 auxpass were,obtained
R4838 T16152 T16150 advcl covering,obtained
R4839 T16153 T16154 nummod "15,354",bp
R4840 T16154 T16152 dobj bp,covering
R4841 T16155 T16150 punct ", ",obtained
R4842 T16156 T16150 advcl extending,obtained
R4843 T16157 T16156 prep from,extending
R4844 T16158 T16159 det a,site
R4845 T16159 T16157 pobj site,from
R4846 T16160 T16159 compound BamHI,site
R4847 T16161 T16159 prep in,site
R4848 T16162 T16161 pobj intron,in
R4849 T16163 T16162 nummod 3,intron
R4850 T16164 T16157 prep to,from
R4851 T16165 T16166 det a,site
R4852 T16166 T16164 pobj site,to
R4853 T16167 T16166 compound BamHI,site
R4854 T16168 T16166 prep in,site
R4855 T16169 T16168 pobj intron,in
R4856 T16170 T16169 nummod 15,intron
R4857 T16171 T16150 punct .,obtained
R4858 T16173 T16174 det These,clones
R4859 T16174 T16175 nsubjpass clones,sequenced
R4860 T16176 T16175 auxpass were,sequenced
R4861 T16177 T16175 advmod completely,sequenced
R4862 T16178 T16175 prep on,sequenced
R4863 T16179 T16180 det both,strands
R4864 T16180 T16178 pobj strands,on
R4865 T16181 T16175 cc and,sequenced
R4866 T16182 T16183 det the,data
R4867 T16183 T16184 nsubjpass data,submitted
R4868 T16184 T16175 conj submitted,sequenced
R4869 T16185 T16184 auxpass were,submitted
R4870 T16186 T16184 prep to,submitted
R4871 T16187 T16186 pobj GenBank,to
R4872 T16188 T16189 punct (,AF497625
R4873 T16189 T16184 parataxis AF497625,submitted
R4874 T16190 T16189 compound accession,AF497625
R4875 T16191 T16189 compound no.,AF497625
R4876 T16192 T16189 punct ),AF497625
R4877 T16193 T16184 punct .,submitted
R4878 T16195 T16196 det The,sequences
R4879 T16196 T16198 nsubj sequences,agreed
R4880 T16197 T16196 amod submitted,sequences
R4881 T16199 T16198 advmod precisely,agreed
R4882 T16200 T16198 prep with,agreed
R4883 T16201 T16202 det the,databases
R4884 T16202 T16200 pobj databases,with
R4885 T16203 T16202 amod public,databases
R4886 T16204 T16198 punct ", ",agreed
R4887 T16205 T16198 cc and,agreed
R4888 T16206 T16207 advmod also,filled
R4889 T16207 T16198 conj filled,agreed
R4890 T16208 T16207 prt in,filled
R4891 T16209 T16210 amod several,gaps
R4892 T16210 T16207 dobj gaps,filled
R4893 T16211 T16210 amod small,gaps
R4894 T16212 T16210 acl corresponding,gaps
R4895 T16213 T16212 prep to,corresponding
R4896 T16214 T16215 amod short,sequences
R4897 T16215 T16213 pobj sequences,to
R4898 T16216 T16215 amod repetitive,sequences
R4899 T16217 T16218 dep which,established
R4900 T16218 T16215 relcl established,sequences
R4901 T16219 T16218 aux could,established
R4902 T16220 T16218 advmod only,established
R4903 T16221 T16218 auxpass be,established
R4904 T16222 T16218 advmod firmly,established
R4905 T16223 T16218 prep by,established
R4906 T16224 T16225 amod repeated,sequencing
R4907 T16225 T16223 pobj sequencing,by
R4908 T16226 T16225 prep in,sequencing
R4909 T16227 T16228 amod non-standard,conditions
R4910 T16228 T16226 pobj conditions,in
R4911 T16229 T16198 punct .,agreed