| Id |
Subject |
Object |
Predicate |
Lexical cue |
| T2488 |
0-3 |
DT |
denotes |
The |
| T2490 |
4-6 |
NNP |
denotes |
El |
| T2491 |
7-13 |
NNP |
denotes |
Dorado |
| T2492 |
14-15 |
-LRB- |
denotes |
( |
| T2493 |
15-20 |
NNP |
denotes |
Build |
| T2494 |
21-23 |
CD |
denotes |
35 |
| T2495 |
23-24 |
-RRB- |
denotes |
) |
| T2489 |
25-32 |
NN |
denotes |
program |
| T2497 |
33-37 |
IN |
denotes |
from |
| T2498 |
38-41 |
DT |
denotes |
the |
| T2500 |
42-51 |
NNP |
denotes |
Genomatix |
| T2501 |
52-60 |
NN |
denotes |
software |
| T2499 |
61-68 |
NN |
denotes |
package |
| T2502 |
69-72 |
VBD |
denotes |
was |
| T2496 |
73-77 |
VBN |
denotes |
used |
| T2503 |
78-80 |
TO |
denotes |
to |
| T2504 |
81-87 |
VB |
denotes |
locate |
| T2505 |
88-91 |
DT |
denotes |
the |
| T2507 |
92-102 |
VBN |
denotes |
correlated |
| T2506 |
103-108 |
NNS |
denotes |
genes |
| T2508 |
109-115 |
IN |
denotes |
within |
| T2509 |
116-119 |
DT |
denotes |
the |
| T2510 |
120-126 |
NN |
denotes |
genome |
| T2511 |
127-130 |
CC |
denotes |
and |
| T2512 |
131-137 |
VB |
denotes |
define |
| T2513 |
138-142 |
CD |
denotes |
1101 |
| T2515 |
143-147 |
NN |
denotes |
base |
| T2514 |
148-153 |
NNS |
denotes |
pairs |
| T2516 |
154-156 |
IN |
denotes |
of |
| T2517 |
157-160 |
DT |
denotes |
the |
| T2519 |
161-169 |
NN |
denotes |
promoter |
| T2518 |
170-177 |
NNS |
denotes |
regions |
| T2520 |
178-179 |
-LRB- |
denotes |
( |
| T2522 |
179-183 |
CD |
denotes |
1000 |
| T2523 |
184-188 |
NN |
denotes |
base |
| T2521 |
189-194 |
NNS |
denotes |
pairs |
| T2524 |
195-203 |
RB |
denotes |
upstream |
| T2525 |
204-206 |
IN |
denotes |
of |
| T2526 |
207-210 |
CC |
denotes |
and |
| T2527 |
211-214 |
CD |
denotes |
100 |
| T2529 |
215-219 |
NN |
denotes |
base |
| T2528 |
220-225 |
NNS |
denotes |
pairs |
| T2531 |
226-230 |
IN |
denotes |
into |
| T2532 |
231-234 |
DT |
denotes |
the |
| T2533 |
235-248 |
NN |
denotes |
transcription |
| T2534 |
249-254 |
NN |
denotes |
start |
| T2530 |
255-259 |
NN |
denotes |
site |
| T2535 |
259-260 |
-RRB- |
denotes |
) |
| T2536 |
261-264 |
IN |
denotes |
for |
| T2537 |
265-269 |
DT |
denotes |
each |
| T2538 |
270-274 |
NN |
denotes |
gene |
| T2539 |
275-276 |
-LRB- |
denotes |
( |
| T2541 |
276-285 |
NNP |
denotes |
Genomatix |
| T2542 |
286-294 |
NNP |
denotes |
Software |
| T2540 |
295-299 |
NNP |
denotes |
GmbH |
| T2543 |
299-301 |
, |
denotes |
, |
| T2544 |
301-307 |
NNP |
denotes |
Munich |
| T2545 |
307-309 |
, |
denotes |
, |
| T2546 |
309-316 |
NNP |
denotes |
Germany |
| T2547 |
316-318 |
, |
denotes |
, |
| T2548 |
318-319 |
-LRB- |
denotes |
[ |
| T2549 |
319-321 |
CD |
denotes |
17 |
| T2550 |
321-322 |
-RRB- |
denotes |
] |
| T2551 |
322-323 |
-RRB- |
denotes |
) |
| T2552 |
323-324 |
. |
denotes |
. |
| T2553 |
324-637 |
sentence |
denotes |
The 1101 base pair sequences obtained from the El Dorado program then were used as the target sequences for putative transcription factor recognition site identification using the MatInspector Version 4.2 program, which yielded sites for 11 transcription factors (Genomatix Software GmbH, Munich, Germany, [17]). |
| T2554 |
325-328 |
DT |
denotes |
The |
| T2556 |
329-333 |
CD |
denotes |
1101 |
| T2558 |
334-338 |
NN |
denotes |
base |
| T2557 |
339-343 |
NN |
denotes |
pair |
| T2555 |
344-353 |
NNS |
denotes |
sequences |
| T2560 |
354-362 |
VBN |
denotes |
obtained |
| T2561 |
363-367 |
IN |
denotes |
from |
| T2562 |
368-371 |
DT |
denotes |
the |
| T2564 |
372-374 |
NNP |
denotes |
El |
| T2565 |
375-381 |
NNP |
denotes |
Dorado |
| T2563 |
382-389 |
NN |
denotes |
program |
| T2566 |
390-394 |
RB |
denotes |
then |
| T2567 |
395-399 |
VBD |
denotes |
were |
| T2559 |
400-404 |
VBN |
denotes |
used |
| T2568 |
405-407 |
IN |
denotes |
as |
| T2569 |
408-411 |
DT |
denotes |
the |
| T2571 |
412-418 |
NN |
denotes |
target |
| T2570 |
419-428 |
NNS |
denotes |
sequences |
| T2572 |
429-432 |
IN |
denotes |
for |
| T2573 |
433-441 |
JJ |
denotes |
putative |
| T2575 |
442-455 |
NN |
denotes |
transcription |
| T2576 |
456-462 |
NN |
denotes |
factor |
| T2578 |
463-474 |
NN |
denotes |
recognition |
| T2577 |
475-479 |
NN |
denotes |
site |
| T2574 |
480-494 |
NN |
denotes |
identification |
| T2579 |
495-500 |
VBG |
denotes |
using |
| T2580 |
501-504 |
DT |
denotes |
the |
| T2582 |
505-517 |
NNP |
denotes |
MatInspector |
| T2583 |
518-525 |
NNP |
denotes |
Version |
| T2584 |
526-529 |
CD |
denotes |
4.2 |
| T2581 |
530-537 |
NN |
denotes |
program |
| T2585 |
537-539 |
, |
denotes |
, |
| T2586 |
539-544 |
WDT |
denotes |
which |
| T2587 |
545-552 |
VBD |
denotes |
yielded |
| T2588 |
553-558 |
NNS |
denotes |
sites |
| T2589 |
559-562 |
IN |
denotes |
for |
| T2590 |
563-565 |
CD |
denotes |
11 |
| T2592 |
566-579 |
NN |
denotes |
transcription |
| T2591 |
580-587 |
NNS |
denotes |
factors |
| T2593 |
588-589 |
-LRB- |
denotes |
( |
| T2595 |
589-598 |
NNP |
denotes |
Genomatix |
| T2596 |
599-607 |
NNP |
denotes |
Software |
| T2594 |
608-612 |
NNP |
denotes |
GmbH |
| T2597 |
612-614 |
, |
denotes |
, |
| T2598 |
614-620 |
NNP |
denotes |
Munich |
| T2599 |
620-622 |
, |
denotes |
, |
| T2600 |
622-629 |
NNP |
denotes |
Germany |
| T2601 |
629-631 |
, |
denotes |
, |
| T2602 |
631-632 |
-LRB- |
denotes |
[ |
| T2603 |
632-634 |
CD |
denotes |
17 |
| T2604 |
634-635 |
-RRB- |
denotes |
] |
| T2605 |
635-636 |
-RRB- |
denotes |
) |
| T2606 |
636-637 |
. |
denotes |
. |
| T2607 |
637-740 |
sentence |
denotes |
The parameters used were the standard (0.75) core similarity and the optimized matrix similarity [18]. |
| T2608 |
638-641 |
DT |
denotes |
The |
| T2609 |
642-652 |
NNS |
denotes |
parameters |
| T2611 |
653-657 |
VBN |
denotes |
used |
| T2610 |
658-662 |
VBD |
denotes |
were |
| T2612 |
663-666 |
DT |
denotes |
the |
| T2614 |
667-675 |
JJ |
denotes |
standard |
| T2615 |
676-677 |
-LRB- |
denotes |
( |
| T2616 |
677-681 |
CD |
denotes |
0.75 |
| T2617 |
681-682 |
-RRB- |
denotes |
) |
| T2618 |
683-687 |
NN |
denotes |
core |
| T2613 |
688-698 |
NN |
denotes |
similarity |
| T2619 |
699-702 |
CC |
denotes |
and |
| T2620 |
703-706 |
DT |
denotes |
the |
| T2622 |
707-716 |
VBN |
denotes |
optimized |
| T2623 |
717-723 |
NN |
denotes |
matrix |
| T2621 |
724-734 |
NN |
denotes |
similarity |
| T2624 |
735-736 |
-LRB- |
denotes |
[ |
| T2625 |
736-738 |
CD |
denotes |
18 |
| T2626 |
738-739 |
-RRB- |
denotes |
] |
| T2627 |
739-740 |
. |
denotes |
. |
| T2628 |
740-891 |
sentence |
denotes |
StaRT-PCR reagents were optimized for ten of these transcription factors, including CEBPB, CEBPE, CEBPG, E2F1, E2F3, E2F4, E2F5, E2F6, EVI1, and PAX5. |
| T2629 |
741-746 |
NN |
denotes |
StaRT |
| T2631 |
746-747 |
HYPH |
denotes |
- |
| T2630 |
747-750 |
NN |
denotes |
PCR |
| T2632 |
751-759 |
NNS |
denotes |
reagents |
| T2634 |
760-764 |
VBD |
denotes |
were |
| T2633 |
765-774 |
VBN |
denotes |
optimized |
| T2635 |
775-778 |
IN |
denotes |
for |
| T2636 |
779-782 |
CD |
denotes |
ten |
| T2637 |
783-785 |
IN |
denotes |
of |
| T2638 |
786-791 |
DT |
denotes |
these |
| T2640 |
792-805 |
NN |
denotes |
transcription |
| T2639 |
806-813 |
NNS |
denotes |
factors |
| T2641 |
813-815 |
, |
denotes |
, |
| T2642 |
815-824 |
VBG |
denotes |
including |
| T2643 |
825-830 |
NN |
denotes |
CEBPB |
| T2644 |
830-832 |
, |
denotes |
, |
| T2645 |
832-837 |
NN |
denotes |
CEBPE |
| T2646 |
837-839 |
, |
denotes |
, |
| T2647 |
839-844 |
NN |
denotes |
CEBPG |
| T2648 |
844-846 |
, |
denotes |
, |
| T2649 |
846-850 |
NN |
denotes |
E2F1 |
| T2650 |
850-852 |
, |
denotes |
, |
| T2651 |
852-856 |
NN |
denotes |
E2F3 |
| T2652 |
856-858 |
, |
denotes |
, |
| T2653 |
858-862 |
NN |
denotes |
E2F4 |
| T2654 |
862-864 |
, |
denotes |
, |
| T2655 |
864-868 |
NN |
denotes |
E2F5 |
| T2656 |
868-870 |
, |
denotes |
, |
| T2657 |
870-874 |
NN |
denotes |
E2F6 |
| T2658 |
874-876 |
, |
denotes |
, |
| T2659 |
876-880 |
NN |
denotes |
EVI1 |
| T2660 |
880-882 |
, |
denotes |
, |
| T2661 |
882-885 |
CC |
denotes |
and |
| T2662 |
886-890 |
NN |
denotes |
PAX5 |
| T2663 |
890-891 |
. |
denotes |
. |
| T2664 |
891-1033 |
sentence |
denotes |
Four transcription factors were expressed at low and invariant levels among multiple NBEC samples and were therefore excluded from the study. |
| T2665 |
892-896 |
CD |
denotes |
Four |
| T2667 |
897-910 |
NN |
denotes |
transcription |
| T2666 |
911-918 |
NNS |
denotes |
factors |
| T2669 |
919-923 |
VBD |
denotes |
were |
| T2668 |
924-933 |
VBN |
denotes |
expressed |
| T2670 |
934-936 |
IN |
denotes |
at |
| T2671 |
937-940 |
JJ |
denotes |
low |
| T2673 |
941-944 |
CC |
denotes |
and |
| T2674 |
945-954 |
JJ |
denotes |
invariant |
| T2672 |
955-961 |
NNS |
denotes |
levels |
| T2675 |
962-967 |
IN |
denotes |
among |
| T2676 |
968-976 |
JJ |
denotes |
multiple |
| T2678 |
977-981 |
NN |
denotes |
NBEC |
| T2677 |
982-989 |
NNS |
denotes |
samples |
| T2679 |
990-993 |
CC |
denotes |
and |
| T2680 |
994-998 |
VBD |
denotes |
were |
| T2682 |
999-1008 |
RB |
denotes |
therefore |
| T2681 |
1009-1017 |
VBN |
denotes |
excluded |
| T2683 |
1018-1022 |
IN |
denotes |
from |
| T2684 |
1023-1026 |
DT |
denotes |
the |
| T2685 |
1027-1032 |
NN |
denotes |
study |
| T2686 |
1032-1033 |
. |
denotes |
. |
| T2687 |
1033-1192 |
sentence |
denotes |
The remaining six, CEBPB, CEBPG, E2F1, E2F3, E2F6, and EVI, were evaluated for correlation with an expanded group of ten antioxidant and six DNA repair genes. |
| T2688 |
1034-1037 |
DT |
denotes |
The |
| T2690 |
1038-1047 |
VBG |
denotes |
remaining |
| T2689 |
1048-1051 |
CD |
denotes |
six |
| T2692 |
1051-1053 |
, |
denotes |
, |
| T2693 |
1053-1058 |
NN |
denotes |
CEBPB |
| T2694 |
1058-1060 |
, |
denotes |
, |
| T2695 |
1060-1065 |
NN |
denotes |
CEBPG |
| T2696 |
1065-1067 |
, |
denotes |
, |
| T2697 |
1067-1071 |
NN |
denotes |
E2F1 |
| T2698 |
1071-1073 |
, |
denotes |
, |
| T2699 |
1073-1077 |
NN |
denotes |
E2F3 |
| T2700 |
1077-1079 |
, |
denotes |
, |
| T2701 |
1079-1083 |
NN |
denotes |
E2F6 |
| T2702 |
1083-1085 |
, |
denotes |
, |
| T2703 |
1085-1088 |
CC |
denotes |
and |
| T2704 |
1089-1092 |
NN |
denotes |
EVI |
| T2705 |
1092-1094 |
, |
denotes |
, |
| T2706 |
1094-1098 |
VBD |
denotes |
were |
| T2691 |
1099-1108 |
VBN |
denotes |
evaluated |
| T2707 |
1109-1112 |
IN |
denotes |
for |
| T2708 |
1113-1124 |
NN |
denotes |
correlation |
| T2709 |
1125-1129 |
IN |
denotes |
with |
| T2710 |
1130-1132 |
DT |
denotes |
an |
| T2712 |
1133-1141 |
VBN |
denotes |
expanded |
| T2711 |
1142-1147 |
NN |
denotes |
group |
| T2713 |
1148-1150 |
IN |
denotes |
of |
| T2714 |
1151-1154 |
CD |
denotes |
ten |
| T2715 |
1155-1166 |
NN |
denotes |
antioxidant |
| T2716 |
1167-1170 |
CC |
denotes |
and |
| T2717 |
1171-1174 |
CD |
denotes |
six |
| T2719 |
1175-1178 |
NN |
denotes |
DNA |
| T2718 |
1179-1185 |
NN |
denotes |
repair |
| T2720 |
1186-1191 |
NNS |
denotes |
genes |
| T2721 |
1191-1192 |
. |
denotes |
. |
| R1583 |
T2488 |
T2489 |
det |
The,program |
| R1584 |
T2489 |
T2496 |
nsubjpass |
program,used |
| R1585 |
T2490 |
T2491 |
nmod |
El,Dorado |
| R1586 |
T2491 |
T2489 |
nmod |
Dorado,program |
| R1587 |
T2492 |
T2493 |
punct |
(,Build |
| R1588 |
T2493 |
T2491 |
parataxis |
Build,Dorado |
| R1589 |
T2494 |
T2493 |
nummod |
35,Build |
| R1590 |
T2495 |
T2493 |
punct |
),Build |
| R1591 |
T2497 |
T2489 |
prep |
from,program |
| R1592 |
T2498 |
T2499 |
det |
the,package |
| R1593 |
T2499 |
T2497 |
pobj |
package,from |
| R1594 |
T2500 |
T2499 |
compound |
Genomatix,package |
| R1595 |
T2501 |
T2499 |
compound |
software,package |
| R1596 |
T2502 |
T2496 |
auxpass |
was,used |
| R1597 |
T2503 |
T2504 |
aux |
to,locate |
| R1598 |
T2504 |
T2496 |
advcl |
locate,used |
| R1599 |
T2505 |
T2506 |
det |
the,genes |
| R1600 |
T2506 |
T2504 |
dobj |
genes,locate |
| R1601 |
T2507 |
T2506 |
amod |
correlated,genes |
| R1602 |
T2508 |
T2504 |
prep |
within,locate |
| R1603 |
T2509 |
T2510 |
det |
the,genome |
| R1604 |
T2510 |
T2508 |
pobj |
genome,within |
| R1605 |
T2511 |
T2504 |
cc |
and,locate |
| R1606 |
T2512 |
T2504 |
conj |
define,locate |
| R1607 |
T2513 |
T2514 |
nummod |
1101,pairs |
| R1608 |
T2514 |
T2512 |
dobj |
pairs,define |
| R1609 |
T2515 |
T2514 |
compound |
base,pairs |
| R1610 |
T2516 |
T2514 |
prep |
of,pairs |
| R1611 |
T2517 |
T2518 |
det |
the,regions |
| R1612 |
T2518 |
T2516 |
pobj |
regions,of |
| R1613 |
T2519 |
T2518 |
compound |
promoter,regions |
| R1614 |
T2520 |
T2521 |
punct |
(,pairs |
| R1615 |
T2521 |
T2514 |
parataxis |
pairs,pairs |
| R1616 |
T2522 |
T2521 |
nummod |
1000,pairs |
| R1617 |
T2523 |
T2521 |
compound |
base,pairs |
| R1618 |
T2524 |
T2521 |
advmod |
upstream,pairs |
| R1619 |
T2525 |
T2524 |
prep |
of,upstream |
| R1620 |
T2526 |
T2521 |
cc |
and,pairs |
| R1621 |
T2527 |
T2528 |
nummod |
100,pairs |
| R1622 |
T2528 |
T2530 |
nmod |
pairs,site |
| R1623 |
T2529 |
T2528 |
nmod |
base,pairs |
| R1624 |
T2530 |
T2521 |
conj |
site,pairs |
| R1625 |
T2531 |
T2528 |
prep |
into,pairs |
| R1626 |
T2532 |
T2530 |
det |
the,site |
| R1627 |
T2533 |
T2530 |
compound |
transcription,site |
| R1628 |
T2534 |
T2530 |
compound |
start,site |
| R1629 |
T2535 |
T2521 |
punct |
),pairs |
| R1630 |
T2536 |
T2512 |
prep |
for,define |
| R1631 |
T2537 |
T2538 |
det |
each,gene |
| R1632 |
T2538 |
T2536 |
pobj |
gene,for |
| R1633 |
T2539 |
T2540 |
punct |
(,GmbH |
| R1634 |
T2540 |
T2512 |
parataxis |
GmbH,define |
| R1635 |
T2541 |
T2540 |
compound |
Genomatix,GmbH |
| R1636 |
T2542 |
T2540 |
compound |
Software,GmbH |
| R1637 |
T2543 |
T2540 |
punct |
", ",GmbH |
| R1638 |
T2544 |
T2540 |
npadvmod |
Munich,GmbH |
| R1639 |
T2545 |
T2540 |
punct |
", ",GmbH |
| R1640 |
T2546 |
T2540 |
npadvmod |
Germany,GmbH |
| R1641 |
T2547 |
T2540 |
punct |
", ",GmbH |
| R1642 |
T2548 |
T2549 |
punct |
[,17 |
| R1643 |
T2549 |
T2540 |
parataxis |
17,GmbH |
| R1644 |
T2550 |
T2549 |
punct |
],17 |
| R1645 |
T2551 |
T2540 |
punct |
),GmbH |
| R1646 |
T2552 |
T2496 |
punct |
.,used |
| R1647 |
T2554 |
T2555 |
det |
The,sequences |
| R1648 |
T2555 |
T2559 |
nsubjpass |
sequences,used |
| R1649 |
T2556 |
T2557 |
nummod |
1101,pair |
| R1650 |
T2557 |
T2555 |
compound |
pair,sequences |
| R1651 |
T2558 |
T2557 |
compound |
base,pair |
| R1652 |
T2560 |
T2555 |
acl |
obtained,sequences |
| R1653 |
T2561 |
T2560 |
prep |
from,obtained |
| R1654 |
T2562 |
T2563 |
det |
the,program |
| R1655 |
T2563 |
T2561 |
pobj |
program,from |
| R1656 |
T2564 |
T2565 |
compound |
El,Dorado |
| R1657 |
T2565 |
T2563 |
compound |
Dorado,program |
| R1658 |
T2566 |
T2559 |
advmod |
then,used |
| R1659 |
T2567 |
T2559 |
auxpass |
were,used |
| R1660 |
T2568 |
T2559 |
prep |
as,used |
| R1661 |
T2569 |
T2570 |
det |
the,sequences |
| R1662 |
T2570 |
T2568 |
pobj |
sequences,as |
| R1663 |
T2571 |
T2570 |
compound |
target,sequences |
| R1664 |
T2572 |
T2570 |
prep |
for,sequences |
| R1665 |
T2573 |
T2574 |
amod |
putative,identification |
| R1666 |
T2574 |
T2572 |
pobj |
identification,for |
| R1667 |
T2575 |
T2576 |
compound |
transcription,factor |
| R1668 |
T2576 |
T2577 |
compound |
factor,site |
| R1669 |
T2577 |
T2574 |
compound |
site,identification |
| R1670 |
T2578 |
T2577 |
compound |
recognition,site |
| R1671 |
T2579 |
T2559 |
advcl |
using,used |
| R1672 |
T2580 |
T2581 |
det |
the,program |
| R1673 |
T2581 |
T2579 |
dobj |
program,using |
| R1674 |
T2582 |
T2581 |
nmod |
MatInspector,program |
| R1675 |
T2583 |
T2581 |
nmod |
Version,program |
| R1676 |
T2584 |
T2583 |
nummod |
4.2,Version |
| R1677 |
T2585 |
T2581 |
punct |
", ",program |
| R1678 |
T2586 |
T2587 |
dep |
which,yielded |
| R1679 |
T2587 |
T2581 |
relcl |
yielded,program |
| R1680 |
T2588 |
T2587 |
dobj |
sites,yielded |
| R1681 |
T2589 |
T2588 |
prep |
for,sites |
| R1682 |
T2590 |
T2591 |
nummod |
11,factors |
| R1683 |
T2591 |
T2589 |
pobj |
factors,for |
| R1684 |
T2592 |
T2591 |
compound |
transcription,factors |
| R1685 |
T2593 |
T2594 |
punct |
(,GmbH |
| R1686 |
T2594 |
T2581 |
parataxis |
GmbH,program |
| R1687 |
T2595 |
T2594 |
compound |
Genomatix,GmbH |
| R1688 |
T2596 |
T2594 |
compound |
Software,GmbH |
| R1689 |
T2597 |
T2594 |
punct |
", ",GmbH |
| R1690 |
T2598 |
T2594 |
npadvmod |
Munich,GmbH |
| R1691 |
T2599 |
T2594 |
punct |
", ",GmbH |
| R1692 |
T2600 |
T2594 |
npadvmod |
Germany,GmbH |
| R1693 |
T2601 |
T2594 |
punct |
", ",GmbH |
| R1694 |
T2602 |
T2603 |
punct |
[,17 |
| R1695 |
T2603 |
T2594 |
parataxis |
17,GmbH |
| R1696 |
T2604 |
T2603 |
punct |
],17 |
| R1697 |
T2605 |
T2594 |
punct |
),GmbH |
| R1698 |
T2606 |
T2559 |
punct |
.,used |
| R1699 |
T2608 |
T2609 |
det |
The,parameters |
| R1700 |
T2609 |
T2610 |
nsubj |
parameters,were |
| R1701 |
T2611 |
T2609 |
acl |
used,parameters |
| R1702 |
T2612 |
T2613 |
det |
the,similarity |
| R1703 |
T2613 |
T2610 |
attr |
similarity,were |
| R1704 |
T2614 |
T2613 |
nmod |
standard,similarity |
| R1705 |
T2615 |
T2616 |
punct |
(,0.75 |
| R1706 |
T2616 |
T2614 |
parataxis |
0.75,standard |
| R1707 |
T2617 |
T2616 |
punct |
),0.75 |
| R1708 |
T2618 |
T2613 |
compound |
core,similarity |
| R1709 |
T2619 |
T2613 |
cc |
and,similarity |
| R1710 |
T2620 |
T2621 |
det |
the,similarity |
| R1711 |
T2621 |
T2613 |
conj |
similarity,similarity |
| R1712 |
T2622 |
T2621 |
amod |
optimized,similarity |
| R1713 |
T2623 |
T2621 |
compound |
matrix,similarity |
| R1714 |
T2624 |
T2625 |
punct |
[,18 |
| R1715 |
T2625 |
T2610 |
parataxis |
18,were |
| R1716 |
T2626 |
T2625 |
punct |
],18 |
| R1717 |
T2627 |
T2610 |
punct |
.,were |
| R1718 |
T2629 |
T2630 |
compound |
StaRT,PCR |
| R1719 |
T2630 |
T2632 |
compound |
PCR,reagents |
| R1720 |
T2631 |
T2630 |
punct |
-,PCR |
| R1721 |
T2632 |
T2633 |
nsubjpass |
reagents,optimized |
| R1722 |
T2634 |
T2633 |
auxpass |
were,optimized |
| R1723 |
T2635 |
T2633 |
prep |
for,optimized |
| R1724 |
T2636 |
T2635 |
pobj |
ten,for |
| R1725 |
T2637 |
T2636 |
prep |
of,ten |
| R1726 |
T2638 |
T2639 |
det |
these,factors |
| R1727 |
T2639 |
T2637 |
pobj |
factors,of |
| R1728 |
T2640 |
T2639 |
compound |
transcription,factors |
| R1729 |
T2641 |
T2636 |
punct |
", ",ten |
| R1730 |
T2642 |
T2636 |
prep |
including,ten |
| R1731 |
T2643 |
T2642 |
pobj |
CEBPB,including |
| R1732 |
T2644 |
T2643 |
punct |
", ",CEBPB |
| R1733 |
T2645 |
T2643 |
conj |
CEBPE,CEBPB |
| R1734 |
T2646 |
T2645 |
punct |
", ",CEBPE |
| R1735 |
T2647 |
T2645 |
conj |
CEBPG,CEBPE |
| R1736 |
T2648 |
T2647 |
punct |
", ",CEBPG |
| R1737 |
T2649 |
T2647 |
conj |
E2F1,CEBPG |
| R1738 |
T2650 |
T2649 |
punct |
", ",E2F1 |
| R1739 |
T2651 |
T2649 |
conj |
E2F3,E2F1 |
| R1740 |
T2652 |
T2651 |
punct |
", ",E2F3 |
| R1741 |
T2653 |
T2651 |
conj |
E2F4,E2F3 |
| R1742 |
T2654 |
T2653 |
punct |
", ",E2F4 |
| R1743 |
T2655 |
T2653 |
conj |
E2F5,E2F4 |
| R1744 |
T2656 |
T2655 |
punct |
", ",E2F5 |
| R1745 |
T2657 |
T2655 |
conj |
E2F6,E2F5 |
| R1746 |
T2658 |
T2657 |
punct |
", ",E2F6 |
| R1747 |
T2659 |
T2657 |
conj |
EVI1,E2F6 |
| R1748 |
T2660 |
T2659 |
punct |
", ",EVI1 |
| R1749 |
T2661 |
T2659 |
cc |
and,EVI1 |
| R1750 |
T2662 |
T2659 |
conj |
PAX5,EVI1 |
| R1751 |
T2663 |
T2633 |
punct |
.,optimized |
| R1752 |
T2665 |
T2666 |
nummod |
Four,factors |
| R1753 |
T2666 |
T2668 |
nsubjpass |
factors,expressed |
| R1754 |
T2667 |
T2666 |
compound |
transcription,factors |
| R1755 |
T2669 |
T2668 |
auxpass |
were,expressed |
| R1756 |
T2670 |
T2668 |
prep |
at,expressed |
| R1757 |
T2671 |
T2672 |
amod |
low,levels |
| R1758 |
T2672 |
T2670 |
pobj |
levels,at |
| R1759 |
T2673 |
T2671 |
cc |
and,low |
| R1760 |
T2674 |
T2671 |
conj |
invariant,low |
| R1761 |
T2675 |
T2668 |
prep |
among,expressed |
| R1762 |
T2676 |
T2677 |
amod |
multiple,samples |
| R1763 |
T2677 |
T2675 |
pobj |
samples,among |
| R1764 |
T2678 |
T2677 |
compound |
NBEC,samples |
| R1765 |
T2679 |
T2668 |
cc |
and,expressed |
| R1766 |
T2680 |
T2681 |
auxpass |
were,excluded |
| R1767 |
T2681 |
T2668 |
conj |
excluded,expressed |
| R1768 |
T2682 |
T2681 |
advmod |
therefore,excluded |
| R1769 |
T2683 |
T2681 |
prep |
from,excluded |
| R1770 |
T2684 |
T2685 |
det |
the,study |
| R1771 |
T2685 |
T2683 |
pobj |
study,from |
| R1772 |
T2686 |
T2668 |
punct |
.,expressed |
| R1773 |
T2688 |
T2689 |
det |
The,six |
| R1774 |
T2689 |
T2691 |
nsubjpass |
six,evaluated |
| R1775 |
T2690 |
T2689 |
amod |
remaining,six |
| R1776 |
T2692 |
T2689 |
punct |
", ",six |
| R1777 |
T2693 |
T2689 |
appos |
CEBPB,six |
| R1778 |
T2694 |
T2693 |
punct |
", ",CEBPB |
| R1779 |
T2695 |
T2693 |
conj |
CEBPG,CEBPB |
| R1780 |
T2696 |
T2695 |
punct |
", ",CEBPG |
| R1781 |
T2697 |
T2695 |
conj |
E2F1,CEBPG |
| R1782 |
T2698 |
T2697 |
punct |
", ",E2F1 |
| R1783 |
T2699 |
T2697 |
conj |
E2F3,E2F1 |
| R1784 |
T2700 |
T2699 |
punct |
", ",E2F3 |
| R1785 |
T2701 |
T2699 |
conj |
E2F6,E2F3 |
| R1786 |
T2702 |
T2701 |
punct |
", ",E2F6 |
| R1787 |
T2703 |
T2701 |
cc |
and,E2F6 |
| R1788 |
T2704 |
T2701 |
conj |
EVI,E2F6 |
| R1789 |
T2705 |
T2691 |
punct |
", ",evaluated |
| R1790 |
T2706 |
T2691 |
auxpass |
were,evaluated |
| R1791 |
T2707 |
T2691 |
prep |
for,evaluated |
| R1792 |
T2708 |
T2707 |
pobj |
correlation,for |
| R1793 |
T2709 |
T2708 |
prep |
with,correlation |
| R1794 |
T2710 |
T2711 |
det |
an,group |
| R1795 |
T2711 |
T2709 |
pobj |
group,with |
| R1796 |
T2712 |
T2711 |
amod |
expanded,group |
| R1797 |
T2713 |
T2711 |
prep |
of,group |
| R1798 |
T2714 |
T2715 |
nummod |
ten,antioxidant |
| R1799 |
T2715 |
T2713 |
pobj |
antioxidant,of |
| R1800 |
T2716 |
T2715 |
cc |
and,antioxidant |
| R1801 |
T2717 |
T2718 |
nummod |
six,repair |
| R1802 |
T2718 |
T2720 |
compound |
repair,genes |
| R1803 |
T2719 |
T2718 |
compound |
DNA,repair |
| R1804 |
T2720 |
T2715 |
conj |
genes,antioxidant |
| R1805 |
T2721 |
T2691 |
punct |
.,evaluated |
