Id |
Subject |
Object |
Predicate |
Lexical cue |
T4907 |
0-5 |
NN |
denotes |
NF-κB |
T4908 |
6-9 |
CC |
denotes |
and |
T4909 |
10-14 |
NNP |
denotes |
CREB |
T4910 |
15-30 |
NNP |
denotes |
Electrophoretic |
T4911 |
31-39 |
NNP |
denotes |
Mobility |
T4912 |
40-45 |
NNP |
denotes |
Shift |
T4913 |
46-51 |
NNP |
denotes |
Assay |
T4914 |
52-53 |
-LRB- |
denotes |
( |
T4915 |
53-57 |
NNP |
denotes |
EMSA |
T4916 |
57-58 |
-RRB- |
denotes |
) |
T4917 |
59-62 |
DT |
denotes |
The |
T4918 |
63-78 |
JJ |
denotes |
non-radioactive |
T4919 |
79-89 |
NNP |
denotes |
LightShift |
T4920 |
90-106 |
NNP |
denotes |
Chemiluminescent |
T4921 |
107-111 |
NNP |
denotes |
EMSA |
T4922 |
112-115 |
NN |
denotes |
Kit |
T4923 |
116-119 |
VBD |
denotes |
was |
T4924 |
120-124 |
VBN |
denotes |
used |
T4925 |
125-127 |
TO |
denotes |
to |
T4926 |
128-134 |
VB |
denotes |
detect |
T4927 |
135-146 |
JJ |
denotes |
DNA-protein |
T4928 |
147-159 |
NNS |
denotes |
interactions |
T4929 |
159-160 |
. |
denotes |
. |
T4930 |
161-164 |
DT |
denotes |
The |
T4931 |
165-170 |
NN |
denotes |
NF-κB |
T4932 |
171-172 |
CD |
denotes |
3 |
T4933 |
172-173 |
NN |
denotes |
′ |
T4934 |
174-180 |
NN |
denotes |
biotin |
T4935 |
181-192 |
VBD |
denotes |
end-labeled |
T4936 |
193-196 |
NNP |
denotes |
DNA |
T4937 |
197-212 |
NN |
denotes |
oligonucleotide |
T4938 |
213-217 |
VBD |
denotes |
used |
T4939 |
218-220 |
IN |
denotes |
as |
T4940 |
221-222 |
DT |
denotes |
a |
T4941 |
223-228 |
NN |
denotes |
probe |
T4942 |
229-232 |
IN |
denotes |
for |
T4943 |
233-236 |
DT |
denotes |
the |
T4944 |
237-241 |
NNP |
denotes |
EMSA |
T4945 |
242-245 |
VBD |
denotes |
was |
T4946 |
246-247 |
DT |
denotes |
a |
T4947 |
248-253 |
JJ |
denotes |
42-bp |
T4948 |
254-260 |
JJ |
denotes |
double |
T4949 |
261-269 |
VBN |
denotes |
stranded |
T4950 |
270-279 |
VBP |
denotes |
construct |
T4951 |
280-281 |
-LRB- |
denotes |
( |
T4952 |
281-282 |
CD |
denotes |
5 |
T4953 |
282-283 |
SYM |
denotes |
′ |
T4954 |
283-284 |
: |
denotes |
- |
T4955 |
284-327 |
NN |
denotes |
TTGTTACAA-GGGGACTTTCCGCTGGGGACTTTCCAGGGAGGC |
T4956 |
330-331 |
CD |
denotes |
3 |
T4957 |
331-332 |
NN |
denotes |
′ |
T4958 |
332-333 |
-RRB- |
denotes |
) |
T4959 |
334-344 |
VBG |
denotes |
containing |
T4960 |
345-348 |
CD |
denotes |
two |
T4961 |
349-357 |
JJ |
denotes |
tandemly |
T4962 |
358-366 |
VBN |
denotes |
repeated |
T4963 |
367-372 |
NN |
denotes |
NF-κB |
T4964 |
373-380 |
JJ |
denotes |
binding |
T4965 |
381-386 |
NNS |
denotes |
sites |
T4966 |
387-388 |
-LRB- |
denotes |
( |
T4967 |
388-398 |
VBN |
denotes |
underlined |
T4968 |
398-399 |
-RRB- |
denotes |
) |
T4969 |
399-400 |
. |
denotes |
. |
T4970 |
401-412 |
NN |
denotes |
Specificity |
T4971 |
413-416 |
VBD |
denotes |
was |
T4972 |
417-427 |
VBN |
denotes |
determined |
T4973 |
428-430 |
IN |
denotes |
by |
T4974 |
431-432 |
DT |
denotes |
a |
T4975 |
433-444 |
NN |
denotes |
competition |
T4976 |
445-450 |
NN |
denotes |
assay |
T4977 |
451-455 |
IN |
denotes |
with |
T4978 |
456-459 |
DT |
denotes |
the |
T4979 |
460-468 |
NN |
denotes |
addition |
T4980 |
469-471 |
IN |
denotes |
of |
T4981 |
472-475 |
CD |
denotes |
200 |
T4982 |
476-481 |
JJ |
denotes |
molar |
T4983 |
482-488 |
NN |
denotes |
excess |
T4984 |
489-491 |
IN |
denotes |
of |
T4985 |
492-501 |
JJ |
denotes |
unlabeled |
T4986 |
502-508 |
JJ |
denotes |
double |
T4987 |
509-517 |
VBN |
denotes |
stranded |
T4988 |
518-523 |
NN |
denotes |
NF-κB |
T4989 |
524-539 |
NN |
denotes |
oligonucleotide |
T4990 |
539-540 |
. |
denotes |
. |
T4991 |
541-544 |
DT |
denotes |
The |
T4992 |
545-549 |
NN |
denotes |
CREB |
T4993 |
550-551 |
CD |
denotes |
3 |
T4994 |
551-552 |
NN |
denotes |
′ |
T4995 |
553-559 |
NN |
denotes |
biotin |
T4996 |
560-571 |
VBD |
denotes |
end-labeled |
T4997 |
572-575 |
NNP |
denotes |
DNA |
T4998 |
576-591 |
NN |
denotes |
oligonucleotide |
T4999 |
592-596 |
VBD |
denotes |
used |
T5000 |
597-599 |
IN |
denotes |
as |
T5001 |
600-601 |
DT |
denotes |
a |
T5002 |
602-607 |
NN |
denotes |
probe |
T5003 |
608-611 |
IN |
denotes |
for |
T5004 |
612-615 |
DT |
denotes |
the |
T5005 |
616-620 |
NNP |
denotes |
EMSA |
T5006 |
621-624 |
VBD |
denotes |
was |
T5007 |
625-626 |
DT |
denotes |
a |
T5008 |
627-632 |
JJ |
denotes |
23-bp |
T5009 |
633-639 |
JJ |
denotes |
double |
T5010 |
640-648 |
VBN |
denotes |
stranded |
T5011 |
649-658 |
VBP |
denotes |
construct |
T5012 |
659-660 |
-LRB- |
denotes |
( |
T5013 |
660-661 |
CD |
denotes |
5 |
T5014 |
661-662 |
SYM |
denotes |
′ |
T5015 |
662-663 |
: |
denotes |
- |
T5016 |
663-666 |
NNP |
denotes |
TTT |
T5017 |
667-670 |
NNP |
denotes |
TCG |
T5018 |
671-674 |
NNP |
denotes |
AGC |
T5019 |
675-690 |
NNP |
denotes |
TCTGACGTCAGA-GC |
T5020 |
693-694 |
CD |
denotes |
3 |
T5021 |
694-695 |
NN |
denotes |
′ |
T5022 |
695-696 |
-RRB- |
denotes |
) |
T5023 |
697-707 |
VBG |
denotes |
containing |
T5024 |
708-711 |
DT |
denotes |
the |
T5025 |
712-715 |
NNP |
denotes |
CRE |
T5026 |
716-725 |
NN |
denotes |
consensus |
T5027 |
726-734 |
NN |
denotes |
sequence |
T5028 |
735-736 |
-LRB- |
denotes |
( |
T5029 |
736-746 |
VBN |
denotes |
underlined |
T5030 |
746-747 |
-RRB- |
denotes |
) |
T5031 |
747-748 |
. |
denotes |
. |
T5032 |
749-760 |
NN |
denotes |
Specificity |
T5033 |
761-764 |
VBD |
denotes |
was |
T5034 |
765-775 |
VBN |
denotes |
determined |
T5035 |
776-778 |
IN |
denotes |
by |
T5036 |
779-780 |
DT |
denotes |
a |
T5037 |
781-792 |
NN |
denotes |
competition |
T5038 |
793-798 |
NN |
denotes |
assay |
T5039 |
799-803 |
IN |
denotes |
with |
T5040 |
804-807 |
DT |
denotes |
the |
T5041 |
808-816 |
NN |
denotes |
addition |
T5042 |
817-819 |
IN |
denotes |
of |
T5043 |
820-823 |
CD |
denotes |
200 |
T5044 |
824-829 |
JJ |
denotes |
molar |
T5045 |
830-836 |
NN |
denotes |
excess |
T5046 |
837-839 |
IN |
denotes |
of |
T5047 |
840-849 |
JJ |
denotes |
unlabeled |
T5048 |
850-856 |
JJ |
denotes |
double |
T5049 |
857-865 |
VBN |
denotes |
stranded |
T5050 |
866-870 |
NNP |
denotes |
CREB |
T5051 |
871-886 |
NN |
denotes |
oligonucleotide |
T5052 |
886-887 |
. |
denotes |
. |
T5053 |
888-895 |
NNP |
denotes |
Nuclear |
T5054 |
896-904 |
NNS |
denotes |
extracts |
T5055 |
905-906 |
-LRB- |
denotes |
( |
T5056 |
906-908 |
CD |
denotes |
10 |
T5057 |
909-911 |
NN |
denotes |
μg |
T5058 |
911-912 |
-RRB- |
denotes |
) |
T5059 |
913-917 |
VBD |
denotes |
were |
T5060 |
918-927 |
VBN |
denotes |
incubated |
T5061 |
928-932 |
IN |
denotes |
with |
T5062 |
933-934 |
CD |
denotes |
5 |
T5063 |
935-937 |
NNP |
denotes |
nM |
T5064 |
938-943 |
NNP |
denotes |
NF-κB |
T5065 |
944-946 |
CC |
denotes |
or |
T5066 |
947-951 |
NNP |
denotes |
CREB |
T5067 |
952-957 |
NN |
denotes |
probe |
T5068 |
958-959 |
-LRB- |
denotes |
( |
T5069 |
959-964 |
NN |
denotes |
NF-kB |
T5070 |
964-965 |
: |
denotes |
: |
T5071 |
966-968 |
CD |
denotes |
1x |
T5072 |
969-976 |
JJ |
denotes |
binding |
T5073 |
977-983 |
NN |
denotes |
buffer |
T5074 |
983-984 |
, |
denotes |
, |
T5075 |
985-987 |
CD |
denotes |
50 |
T5076 |
988-990 |
NNP |
denotes |
mM |
T5077 |
991-994 |
NNP |
denotes |
KCl |
T5078 |
994-995 |
, |
denotes |
, |
T5079 |
996-997 |
CD |
denotes |
1 |
T5080 |
998-1000 |
NNP |
denotes |
mM |
T5081 |
1001-1005 |
NNP |
denotes |
EDTA |
T5082 |
1005-1006 |
, |
denotes |
, |
T5083 |
1007-1008 |
CD |
denotes |
1 |
T5084 |
1009-1011 |
NNP |
denotes |
mM |
T5085 |
1012-1015 |
NNP |
denotes |
DTT |
T5086 |
1015-1016 |
, |
denotes |
, |
T5087 |
1017-1020 |
CD |
denotes |
0.1 |
T5088 |
1020-1021 |
NN |
denotes |
% |
T5089 |
1022-1026 |
CD |
denotes |
NP40 |
T5090 |
1026-1027 |
, |
denotes |
, |
T5091 |
1028-1030 |
CD |
denotes |
10 |
T5092 |
1030-1031 |
NN |
denotes |
% |
T5093 |
1032-1040 |
NN |
denotes |
glycerol |
T5094 |
1040-1041 |
, |
denotes |
, |
T5095 |
1042-1045 |
CC |
denotes |
and |
T5096 |
1046-1048 |
CD |
denotes |
50 |
T5097 |
1049-1051 |
NN |
denotes |
ng |
T5098 |
1051-1052 |
NN |
denotes |
/ |
T5099 |
1052-1054 |
NN |
denotes |
μl |
T5100 |
1055-1059 |
NN |
denotes |
poly |
T5101 |
1060-1065 |
NN |
denotes |
dI-dC |
T5102 |
1065-1066 |
, |
denotes |
, |
T5103 |
1067-1071 |
NNP |
denotes |
CREB |
T5104 |
1071-1072 |
: |
denotes |
: |
T5105 |
1073-1075 |
JJ |
denotes |
1x |
T5106 |
1076-1083 |
JJ |
denotes |
binding |
T5107 |
1084-1090 |
NN |
denotes |
buffer |
T5108 |
1090-1091 |
, |
denotes |
, |
T5109 |
1092-1094 |
CD |
denotes |
20 |
T5110 |
1095-1097 |
NNP |
denotes |
mM |
T5111 |
1098-1102 |
NNP |
denotes |
Tris |
T5112 |
1102-1103 |
, |
denotes |
, |
T5113 |
1104-1106 |
NNP |
denotes |
pH |
T5114 |
1107-1110 |
CD |
denotes |
7.5 |
T5115 |
1110-1111 |
, |
denotes |
, |
T5116 |
1112-1114 |
CD |
denotes |
50 |
T5117 |
1115-1117 |
NNP |
denotes |
mM |
T5118 |
1118-1121 |
NNP |
denotes |
KCl |
T5119 |
1121-1122 |
, |
denotes |
, |
T5120 |
1123-1124 |
CD |
denotes |
1 |
T5121 |
1125-1127 |
NNP |
denotes |
mM |
T5122 |
1128-1132 |
NNP |
denotes |
EDTA |
T5123 |
1132-1133 |
, |
denotes |
, |
T5124 |
1134-1135 |
CD |
denotes |
1 |
T5125 |
1136-1138 |
NNP |
denotes |
mM |
T5126 |
1139-1142 |
NNP |
denotes |
DTT |
T5127 |
1142-1143 |
, |
denotes |
, |
T5128 |
1144-1148 |
CD |
denotes |
0.10 |
T5129 |
1148-1149 |
NN |
denotes |
% |
T5130 |
1150-1154 |
CD |
denotes |
NP40 |
T5131 |
1154-1155 |
, |
denotes |
, |
T5132 |
1156-1157 |
CD |
denotes |
6 |
T5133 |
1157-1158 |
NN |
denotes |
% |
T5134 |
1159-1167 |
NN |
denotes |
glycerol |
T5135 |
1167-1168 |
, |
denotes |
, |
T5136 |
1169-1172 |
CD |
denotes |
0.1 |
T5137 |
1173-1178 |
NNP |
denotes |
mg/mL |
T5138 |
1179-1182 |
NNP |
denotes |
BSA |
T5139 |
1183-1186 |
CC |
denotes |
and |
T5140 |
1187-1189 |
CD |
denotes |
50 |
T5141 |
1190-1192 |
NN |
denotes |
ng |
T5142 |
1192-1193 |
NN |
denotes |
/ |
T5143 |
1193-1195 |
NN |
denotes |
μl |
T5144 |
1196-1200 |
NN |
denotes |
poly |
T5145 |
1201-1206 |
NN |
denotes |
dI-dC |
T5146 |
1206-1207 |
-RRB- |
denotes |
) |
T5147 |
1208-1211 |
CC |
denotes |
and |
T5148 |
1212-1216 |
VBD |
denotes |
were |
T5149 |
1217-1221 |
RB |
denotes |
then |
T5150 |
1222-1237 |
VBN |
denotes |
electrophoresed |
T5151 |
1238-1245 |
IN |
denotes |
through |
T5152 |
1246-1247 |
DT |
denotes |
a |
T5153 |
1248-1249 |
CD |
denotes |
6 |
T5154 |
1249-1250 |
NN |
denotes |
% |
T5155 |
1251-1254 |
NN |
denotes |
DNA |
T5156 |
1255-1266 |
NN |
denotes |
retardation |
T5157 |
1267-1270 |
NN |
denotes |
gel |
T5158 |
1271-1273 |
IN |
denotes |
at |
T5159 |
1274-1278 |
CD |
denotes |
100V |
T5160 |
1279-1282 |
IN |
denotes |
for |
T5161 |
1283-1285 |
CD |
denotes |
90 |
T5162 |
1286-1293 |
NNS |
denotes |
minutes |
T5163 |
1293-1294 |
. |
denotes |
. |
T5164 |
1295-1298 |
DT |
denotes |
The |
T5165 |
1299-1303 |
NNS |
denotes |
gels |
T5166 |
1304-1308 |
VBD |
denotes |
were |
T5167 |
1309-1328 |
RB |
denotes |
electrophoretically |
T5168 |
1329-1340 |
VBN |
denotes |
transferred |
T5169 |
1341-1343 |
IN |
denotes |
at |
T5170 |
1344-1349 |
NNP |
denotes |
380mA |
T5171 |
1350-1353 |
IN |
denotes |
for |
T5172 |
1354-1355 |
CD |
denotes |
1 |
T5173 |
1356-1360 |
NN |
denotes |
hour |
T5174 |
1361-1363 |
IN |
denotes |
on |
T5175 |
1364-1367 |
NN |
denotes |
ice |
T5176 |
1368-1370 |
TO |
denotes |
to |
T5177 |
1371-1372 |
DT |
denotes |
a |
T5178 |
1373-1383 |
RB |
denotes |
positively |
T5179 |
1384-1391 |
VBN |
denotes |
charged |
T5180 |
1392-1397 |
NN |
denotes |
nylon |
T5181 |
1398-1406 |
NN |
denotes |
membrane |
T5182 |
1407-1410 |
CC |
denotes |
and |
T5183 |
1411-1422 |
RB |
denotes |
immediately |
T5184 |
1423-1435 |
JJ |
denotes |
cross-linked |
T5185 |
1436-1439 |
IN |
denotes |
for |
T5186 |
1440-1442 |
CD |
denotes |
15 |
T5187 |
1443-1450 |
NNS |
denotes |
minutes |
T5188 |
1451-1455 |
IN |
denotes |
with |
T5189 |
1456-1457 |
DT |
denotes |
a |
T5190 |
1458-1460 |
NNP |
denotes |
UV |
T5191 |
1461-1477 |
NN |
denotes |
transilluminator |
T5192 |
1478-1486 |
VBN |
denotes |
equipped |
T5193 |
1487-1491 |
IN |
denotes |
with |
T5194 |
1492-1493 |
DT |
denotes |
a |
T5195 |
1494-1497 |
CD |
denotes |
312 |
T5196 |
1498-1500 |
NN |
denotes |
nm |
T5197 |
1501-1505 |
NN |
denotes |
bulb |
T5198 |
1505-1506 |
. |
denotes |
. |
T5199 |
1507-1531 |
JJ |
denotes |
Streptavidin-horseradish |
T5200 |
1532-1542 |
NN |
denotes |
peroxidase |
T5201 |
1543-1552 |
NN |
denotes |
conjugate |
T5202 |
1553-1556 |
CC |
denotes |
and |
T5203 |
1557-1560 |
DT |
denotes |
the |
T5204 |
1561-1571 |
NNP |
denotes |
LightShift |
T5205 |
1572-1588 |
NNP |
denotes |
Chemiluminescent |
T5206 |
1589-1598 |
NNP |
denotes |
Substrate |
T5207 |
1599-1603 |
VBD |
denotes |
were |
T5208 |
1604-1608 |
VBN |
denotes |
used |
T5209 |
1609-1611 |
TO |
denotes |
to |
T5210 |
1612-1618 |
VB |
denotes |
detect |
T5211 |
1619-1622 |
DT |
denotes |
the |
T5212 |
1623-1629 |
NN |
denotes |
biotin |
T5213 |
1630-1641 |
VBD |
denotes |
end-labeled |
T5214 |
1642-1645 |
NNP |
denotes |
DNA |
T5215 |
1645-1646 |
. |
denotes |
. |
T5216 |
1647-1650 |
DT |
denotes |
The |
T5217 |
1651-1656 |
NN |
denotes |
nylon |
T5218 |
1657-1666 |
NNS |
denotes |
membranes |
T5219 |
1667-1671 |
VBD |
denotes |
were |
T5220 |
1672-1679 |
VBN |
denotes |
exposed |
T5221 |
1680-1682 |
TO |
denotes |
to |
T5222 |
1683-1688 |
VB |
denotes |
x-ray |
T5223 |
1689-1693 |
NN |
denotes |
film |
T5224 |
1694-1697 |
IN |
denotes |
for |
T5225 |
1698-1699 |
CD |
denotes |
1 |
T5226 |
1700-1701 |
CD |
denotes |
3 |
T5227 |
1702-1709 |
NNS |
denotes |
minutes |
T5228 |
1710-1713 |
IN |
denotes |
for |
T5229 |
1714-1723 |
NN |
denotes |
detection |
T5230 |
1723-1724 |
. |
denotes |
. |
R4034 |
T4907 |
T4907 |
ROOT |
NF-κB,NF-κB |
R4035 |
T4908 |
T4907 |
cc |
and,NF-κB |
R4036 |
T4909 |
T4913 |
compound |
CREB,Assay |
R4037 |
T4910 |
T4913 |
compound |
Electrophoretic,Assay |
R4038 |
T4911 |
T4912 |
compound |
Mobility,Shift |
R4039 |
T4912 |
T4913 |
compound |
Shift,Assay |
R4040 |
T4913 |
T4907 |
conj |
Assay,NF-κB |
R4041 |
T4914 |
T4915 |
punct |
(,EMSA |
R4042 |
T4915 |
T4913 |
appos |
EMSA,Assay |
R4043 |
T4916 |
T4913 |
punct |
),Assay |
R4044 |
T4917 |
T4922 |
det |
The,Kit |
R4045 |
T4918 |
T4922 |
amod |
non-radioactive,Kit |
R4046 |
T4919 |
T4921 |
compound |
LightShift,EMSA |
R4047 |
T4920 |
T4921 |
compound |
Chemiluminescent,EMSA |
R4048 |
T4921 |
T4922 |
compound |
EMSA,Kit |
R4049 |
T4922 |
T4924 |
nsubjpass |
Kit,used |
R4050 |
T4923 |
T4924 |
auxpass |
was,used |
R4051 |
T4924 |
T4924 |
ROOT |
used,used |
R4052 |
T4925 |
T4926 |
aux |
to,detect |
R4053 |
T4926 |
T4924 |
xcomp |
detect,used |
R4054 |
T4927 |
T4928 |
amod |
DNA-protein,interactions |
R4055 |
T4928 |
T4926 |
dobj |
interactions,detect |
R4056 |
T4929 |
T4924 |
punct |
.,used |
R4057 |
T4930 |
T4934 |
det |
The,biotin |
R4058 |
T4931 |
T4934 |
nmod |
NF-κB,biotin |
R4059 |
T4932 |
T4933 |
nummod |
3,′ |
R4060 |
T4933 |
T4934 |
compound |
′,biotin |
R4061 |
T4934 |
T4935 |
nsubj |
biotin,end-labeled |
R4062 |
T4935 |
T4935 |
ROOT |
end-labeled,end-labeled |
R4063 |
T4936 |
T4937 |
compound |
DNA,oligonucleotide |
R4064 |
T4937 |
T4945 |
nsubj |
oligonucleotide,was |
R4065 |
T4938 |
T4937 |
acl |
used,oligonucleotide |
R4066 |
T4939 |
T4938 |
prep |
as,used |
R4067 |
T4940 |
T4941 |
det |
a,probe |
R4068 |
T4941 |
T4939 |
pobj |
probe,as |
R4069 |
T4942 |
T4941 |
prep |
for,probe |
R4070 |
T4943 |
T4944 |
det |
the,EMSA |
R4071 |
T4944 |
T4942 |
pobj |
EMSA,for |
R4072 |
T4945 |
T4935 |
ccomp |
was,end-labeled |
R4073 |
T4946 |
T4950 |
det |
a,construct |
R4074 |
T4947 |
T4949 |
amod |
42-bp,stranded |
R4075 |
T4948 |
T4949 |
amod |
double,stranded |
R4076 |
T4949 |
T4950 |
amod |
stranded,construct |
R4077 |
T4950 |
T4945 |
attr |
construct,was |
R4078 |
T4951 |
T4955 |
punct |
(,TTGTTACAA-GGGGACTTTCCGCTGGGGACTTTCCAGGGAGGC |
R4079 |
T4952 |
T4955 |
nummod |
5,TTGTTACAA-GGGGACTTTCCGCTGGGGACTTTCCAGGGAGGC |
R4080 |
T4953 |
T4955 |
punct |
′,TTGTTACAA-GGGGACTTTCCGCTGGGGACTTTCCAGGGAGGC |
R4081 |
T4954 |
T4955 |
punct |
-,TTGTTACAA-GGGGACTTTCCGCTGGGGACTTTCCAGGGAGGC |
R4082 |
T4955 |
T4959 |
meta |
TTGTTACAA-GGGGACTTTCCGCTGGGGACTTTCCAGGGAGGC,containing |
R4083 |
T4956 |
T4957 |
nummod |
3,′ |
R4084 |
T4957 |
T4955 |
appos |
′,TTGTTACAA-GGGGACTTTCCGCTGGGGACTTTCCAGGGAGGC |
R4085 |
T4958 |
T4955 |
punct |
),TTGTTACAA-GGGGACTTTCCGCTGGGGACTTTCCAGGGAGGC |
R4086 |
T4959 |
T4950 |
acl |
containing,construct |
R4087 |
T4960 |
T4965 |
nummod |
two,sites |
R4088 |
T4961 |
T4965 |
amod |
tandemly,sites |
R4089 |
T4962 |
T4963 |
amod |
repeated,NF-κB |
R4090 |
T4963 |
T4965 |
amod |
NF-κB,sites |
R4091 |
T4964 |
T4965 |
amod |
binding,sites |
R4092 |
T4965 |
T4959 |
dobj |
sites,containing |
R4093 |
T4966 |
T4965 |
punct |
(,sites |
R4094 |
T4967 |
T4965 |
acl |
underlined,sites |
R4095 |
T4968 |
T4965 |
punct |
),sites |
R4096 |
T4969 |
T4945 |
punct |
.,was |
R4097 |
T4970 |
T4972 |
nsubjpass |
Specificity,determined |
R4098 |
T4971 |
T4972 |
auxpass |
was,determined |
R4099 |
T4972 |
T4972 |
ROOT |
determined,determined |
R4100 |
T4973 |
T4972 |
agent |
by,determined |
R4101 |
T4974 |
T4976 |
det |
a,assay |
R4102 |
T4975 |
T4976 |
compound |
competition,assay |
R4103 |
T4976 |
T4973 |
pobj |
assay,by |
R4104 |
T4977 |
T4976 |
prep |
with,assay |
R4105 |
T4978 |
T4979 |
det |
the,addition |
R4106 |
T4979 |
T4977 |
pobj |
addition,with |
R4107 |
T4980 |
T4979 |
prep |
of,addition |
R4108 |
T4981 |
T4983 |
nummod |
200,excess |
R4109 |
T4982 |
T4983 |
amod |
molar,excess |
R4110 |
T4983 |
T4980 |
pobj |
excess,of |
R4111 |
T4984 |
T4983 |
prep |
of,excess |
R4112 |
T4985 |
T4989 |
amod |
unlabeled,oligonucleotide |
R4113 |
T4986 |
T4989 |
amod |
double,oligonucleotide |
R4114 |
T4987 |
T4989 |
amod |
stranded,oligonucleotide |
R4115 |
T4988 |
T4989 |
compound |
NF-κB,oligonucleotide |
R4116 |
T4989 |
T4984 |
pobj |
oligonucleotide,of |
R4117 |
T4990 |
T4972 |
punct |
.,determined |
R4118 |
T4991 |
T4995 |
det |
The,biotin |
R4119 |
T4992 |
T4995 |
nmod |
CREB,biotin |
R4120 |
T4993 |
T4994 |
nummod |
3,′ |
R4121 |
T4994 |
T4995 |
compound |
′,biotin |
R4122 |
T4995 |
T4996 |
nsubj |
biotin,end-labeled |
R4123 |
T4996 |
T4996 |
ROOT |
end-labeled,end-labeled |
R4124 |
T4997 |
T4998 |
compound |
DNA,oligonucleotide |
R4125 |
T4998 |
T4999 |
nsubj |
oligonucleotide,used |
R4126 |
T4999 |
T4996 |
conj |
used,end-labeled |
R4127 |
T5000 |
T4999 |
prep |
as,used |
R4128 |
T5001 |
T5002 |
det |
a,probe |
R4129 |
T5002 |
T5000 |
pobj |
probe,as |
R4130 |
T5003 |
T5002 |
prep |
for,probe |
R4131 |
T5004 |
T5005 |
det |
the,EMSA |
R4132 |
T5005 |
T5003 |
pobj |
EMSA,for |
R4133 |
T5006 |
T4996 |
conj |
was,end-labeled |
R4134 |
T5007 |
T5011 |
det |
a,construct |
R4135 |
T5008 |
T5010 |
amod |
23-bp,stranded |
R4136 |
T5009 |
T5010 |
amod |
double,stranded |
R4137 |
T5010 |
T5011 |
amod |
stranded,construct |
R4138 |
T5011 |
T5006 |
attr |
construct,was |
R4139 |
T5012 |
T5019 |
punct |
(,TCTGACGTCAGA-GC |
R4140 |
T5013 |
T5019 |
nummod |
5,TCTGACGTCAGA-GC |
R4141 |
T5014 |
T5019 |
punct |
′,TCTGACGTCAGA-GC |
R4142 |
T5015 |
T5019 |
punct |
-,TCTGACGTCAGA-GC |
R4143 |
T5016 |
T5019 |
compound |
TTT,TCTGACGTCAGA-GC |
R4144 |
T5017 |
T5019 |
compound |
TCG,TCTGACGTCAGA-GC |
R4145 |
T5018 |
T5019 |
compound |
AGC,TCTGACGTCAGA-GC |
R4146 |
T5019 |
T5011 |
appos |
TCTGACGTCAGA-GC,construct |
R4147 |
T5020 |
T5021 |
nummod |
3,′ |
R4148 |
T5021 |
T5019 |
appos |
′,TCTGACGTCAGA-GC |
R4149 |
T5022 |
T5021 |
punct |
),′ |
R4150 |
T5023 |
T5019 |
acl |
containing,TCTGACGTCAGA-GC |
R4151 |
T5024 |
T5027 |
det |
the,sequence |
R4152 |
T5025 |
T5027 |
compound |
CRE,sequence |
R4153 |
T5026 |
T5027 |
compound |
consensus,sequence |
R4154 |
T5027 |
T5023 |
dobj |
sequence,containing |
R4155 |
T5028 |
T5029 |
punct |
(,underlined |
R4156 |
T5029 |
T5019 |
parataxis |
underlined,TCTGACGTCAGA-GC |
R4157 |
T5030 |
T5029 |
punct |
),underlined |
R4158 |
T5031 |
T4996 |
punct |
.,end-labeled |
R4159 |
T5032 |
T5034 |
nsubjpass |
Specificity,determined |
R4160 |
T5033 |
T5034 |
auxpass |
was,determined |
R4161 |
T5034 |
T5034 |
ROOT |
determined,determined |
R4162 |
T5035 |
T5034 |
agent |
by,determined |
R4163 |
T5036 |
T5038 |
det |
a,assay |
R4164 |
T5037 |
T5038 |
compound |
competition,assay |
R4165 |
T5038 |
T5035 |
pobj |
assay,by |
R4166 |
T5039 |
T5038 |
prep |
with,assay |
R4167 |
T5040 |
T5041 |
det |
the,addition |
R4168 |
T5041 |
T5039 |
pobj |
addition,with |
R4169 |
T5042 |
T5041 |
prep |
of,addition |
R4170 |
T5043 |
T5045 |
nummod |
200,excess |
R4171 |
T5044 |
T5045 |
amod |
molar,excess |
R4172 |
T5045 |
T5042 |
pobj |
excess,of |
R4173 |
T5046 |
T5045 |
prep |
of,excess |
R4174 |
T5047 |
T5048 |
amod |
unlabeled,double |
R4175 |
T5048 |
T5051 |
amod |
double,oligonucleotide |
R4176 |
T5049 |
T5051 |
amod |
stranded,oligonucleotide |
R4177 |
T5050 |
T5051 |
compound |
CREB,oligonucleotide |
R4178 |
T5051 |
T5046 |
pobj |
oligonucleotide,of |
R4179 |
T5052 |
T5034 |
punct |
.,determined |
R4180 |
T5053 |
T5054 |
compound |
Nuclear,extracts |
R4181 |
T5054 |
T5060 |
nsubjpass |
extracts,incubated |
R4182 |
T5055 |
T5054 |
punct |
(,extracts |
R4183 |
T5056 |
T5057 |
nummod |
10,μg |
R4184 |
T5057 |
T5054 |
appos |
μg,extracts |
R4185 |
T5058 |
T5054 |
punct |
),extracts |
R4186 |
T5059 |
T5060 |
auxpass |
were,incubated |
R4187 |
T5060 |
T5060 |
ROOT |
incubated,incubated |
R4188 |
T5061 |
T5060 |
prep |
with,incubated |
R4189 |
T5062 |
T5064 |
nummod |
5,NF-κB |
R4190 |
T5063 |
T5064 |
compound |
nM,NF-κB |
R4191 |
T5064 |
T5061 |
pobj |
NF-κB,with |
R4192 |
T5065 |
T5064 |
cc |
or,NF-κB |
R4193 |
T5066 |
T5067 |
compound |
CREB,probe |
R4194 |
T5067 |
T5064 |
conj |
probe,NF-κB |
R4195 |
T5068 |
T5150 |
punct |
(,electrophoresed |
R4196 |
T5069 |
T5150 |
nsubjpass |
NF-kB,electrophoresed |
R4197 |
T5070 |
T5069 |
punct |
:,NF-kB |
R4198 |
T5071 |
T5073 |
nummod |
1x,buffer |
R4199 |
T5072 |
T5073 |
amod |
binding,buffer |
R4200 |
T5073 |
T5069 |
appos |
buffer,NF-kB |
R4201 |
T5074 |
T5073 |
punct |
",",buffer |
R4202 |
T5075 |
T5077 |
nummod |
50,KCl |
R4203 |
T5076 |
T5077 |
compound |
mM,KCl |
R4204 |
T5077 |
T5073 |
appos |
KCl,buffer |
R4205 |
T5078 |
T5077 |
punct |
",",KCl |
R4206 |
T5079 |
T5081 |
nummod |
1,EDTA |
R4207 |
T5080 |
T5081 |
compound |
mM,EDTA |
R4208 |
T5081 |
T5077 |
appos |
EDTA,KCl |
R4209 |
T5082 |
T5081 |
punct |
",",EDTA |
R4210 |
T5083 |
T5085 |
nummod |
1,DTT |
R4211 |
T5084 |
T5085 |
compound |
mM,DTT |
R4212 |
T5085 |
T5081 |
appos |
DTT,EDTA |
R4213 |
T5086 |
T5085 |
punct |
",",DTT |
R4214 |
T5087 |
T5088 |
nummod |
0.1,% |
R4215 |
T5088 |
T5085 |
appos |
%,DTT |
R4216 |
T5089 |
T5093 |
nummod |
NP40,glycerol |
R4217 |
T5090 |
T5093 |
punct |
",",glycerol |
R4218 |
T5091 |
T5092 |
nummod |
10,% |
R4219 |
T5092 |
T5093 |
compound |
%,glycerol |
R4220 |
T5093 |
T5085 |
conj |
glycerol,DTT |
R4221 |
T5094 |
T5093 |
punct |
",",glycerol |
R4222 |
T5095 |
T5093 |
cc |
and,glycerol |
R4223 |
T5096 |
T5097 |
nummod |
50,ng |
R4224 |
T5097 |
T5101 |
amod |
ng,dI-dC |
R4225 |
T5098 |
T5101 |
nmod |
/,dI-dC |
R4226 |
T5099 |
T5101 |
compound |
μl,dI-dC |
R4227 |
T5100 |
T5101 |
compound |
poly,dI-dC |
R4228 |
T5101 |
T5093 |
conj |
dI-dC,glycerol |
R4229 |
T5102 |
T5101 |
punct |
",",dI-dC |
R4230 |
T5103 |
T5111 |
nmod |
CREB,Tris |
R4231 |
T5104 |
T5107 |
punct |
:,buffer |
R4232 |
T5105 |
T5107 |
amod |
1x,buffer |
R4233 |
T5106 |
T5107 |
amod |
binding,buffer |
R4234 |
T5107 |
T5111 |
nmod |
buffer,Tris |
R4235 |
T5108 |
T5111 |
punct |
",",Tris |
R4236 |
T5109 |
T5111 |
nummod |
20,Tris |
R4237 |
T5110 |
T5111 |
compound |
mM,Tris |
R4238 |
T5111 |
T5101 |
appos |
Tris,dI-dC |
R4239 |
T5112 |
T5111 |
punct |
",",Tris |
R4240 |
T5113 |
T5111 |
conj |
pH,Tris |
R4241 |
T5114 |
T5113 |
nummod |
7.5,pH |
R4242 |
T5115 |
T5113 |
punct |
",",pH |
R4243 |
T5116 |
T5118 |
nummod |
50,KCl |
R4244 |
T5117 |
T5118 |
compound |
mM,KCl |
R4245 |
T5118 |
T5113 |
conj |
KCl,pH |
R4246 |
T5119 |
T5118 |
punct |
",",KCl |
R4247 |
T5120 |
T5122 |
nummod |
1,EDTA |
R4248 |
T5121 |
T5122 |
compound |
mM,EDTA |
R4249 |
T5122 |
T5118 |
conj |
EDTA,KCl |
R4250 |
T5123 |
T5122 |
punct |
",",EDTA |
R4251 |
T5124 |
T5126 |
nummod |
1,DTT |
R4252 |
T5125 |
T5126 |
compound |
mM,DTT |
R4253 |
T5126 |
T5122 |
conj |
DTT,EDTA |
R4254 |
T5127 |
T5126 |
punct |
",",DTT |
R4255 |
T5128 |
T5129 |
nummod |
0.10,% |
R4256 |
T5129 |
T5126 |
appos |
%,DTT |
R4257 |
T5130 |
T5134 |
nummod |
NP40,glycerol |
R4258 |
T5131 |
T5130 |
punct |
",",NP40 |
R4259 |
T5132 |
T5133 |
nummod |
6,% |
R4260 |
T5133 |
T5134 |
compound |
%,glycerol |
R4261 |
T5134 |
T5126 |
conj |
glycerol,DTT |
R4262 |
T5135 |
T5134 |
punct |
",",glycerol |
R4263 |
T5136 |
T5138 |
nummod |
0.1,BSA |
R4264 |
T5137 |
T5138 |
compound |
mg/mL,BSA |
R4265 |
T5138 |
T5134 |
conj |
BSA,glycerol |
R4266 |
T5139 |
T5138 |
cc |
and,BSA |
R4267 |
T5140 |
T5141 |
nummod |
50,ng |
R4268 |
T5141 |
T5145 |
nmod |
ng,dI-dC |
R4269 |
T5142 |
T5145 |
nmod |
/,dI-dC |
R4270 |
T5143 |
T5145 |
nmod |
μl,dI-dC |
R4271 |
T5144 |
T5145 |
compound |
poly,dI-dC |
R4272 |
T5145 |
T5138 |
conj |
dI-dC,BSA |
R4273 |
T5146 |
T5145 |
punct |
),dI-dC |
R4274 |
T5147 |
T5101 |
cc |
and,dI-dC |
R4275 |
T5148 |
T5150 |
auxpass |
were,electrophoresed |
R4276 |
T5149 |
T5150 |
advmod |
then,electrophoresed |
R4277 |
T5150 |
T5150 |
ROOT |
electrophoresed,electrophoresed |
R4278 |
T5151 |
T5150 |
prep |
through,electrophoresed |
R4279 |
T5152 |
T5157 |
det |
a,gel |
R4280 |
T5153 |
T5154 |
nummod |
6,% |
R4281 |
T5154 |
T5157 |
compound |
%,gel |
R4282 |
T5155 |
T5156 |
compound |
DNA,retardation |
R4283 |
T5156 |
T5157 |
compound |
retardation,gel |
R4284 |
T5157 |
T5151 |
pobj |
gel,through |
R4285 |
T5158 |
T5157 |
prep |
at,gel |
R4286 |
T5159 |
T5158 |
pobj |
100V,at |
R4287 |
T5160 |
T5150 |
prep |
for,electrophoresed |
R4288 |
T5161 |
T5162 |
nummod |
90,minutes |
R4289 |
T5162 |
T5160 |
pobj |
minutes,for |
R4290 |
T5163 |
T5150 |
punct |
.,electrophoresed |
R4291 |
T5164 |
T5165 |
det |
The,gels |
R4292 |
T5165 |
T5168 |
nsubjpass |
gels,transferred |
R4293 |
T5166 |
T5168 |
auxpass |
were,transferred |
R4294 |
T5167 |
T5168 |
advmod |
electrophoretically,transferred |
R4295 |
T5168 |
T5168 |
ROOT |
transferred,transferred |
R4296 |
T5169 |
T5168 |
prep |
at,transferred |
R4297 |
T5170 |
T5169 |
pobj |
380mA,at |
R4298 |
T5171 |
T5168 |
prep |
for,transferred |
R4299 |
T5172 |
T5173 |
nummod |
1,hour |
R4300 |
T5173 |
T5171 |
pobj |
hour,for |
R4301 |
T5174 |
T5173 |
prep |
on,hour |
R4302 |
T5175 |
T5174 |
pobj |
ice,on |
R4303 |
T5176 |
T5168 |
prep |
to,transferred |
R4304 |
T5177 |
T5181 |
det |
a,membrane |
R4305 |
T5178 |
T5179 |
advmod |
positively,charged |
R4306 |
T5179 |
T5181 |
amod |
charged,membrane |
R4307 |
T5180 |
T5181 |
compound |
nylon,membrane |
R4308 |
T5181 |
T5176 |
pobj |
membrane,to |
R4309 |
T5182 |
T5181 |
cc |
and,membrane |
R4310 |
T5183 |
T5184 |
advmod |
immediately,cross-linked |
R4311 |
T5184 |
T5181 |
conj |
cross-linked,membrane |
R4312 |
T5185 |
T5184 |
prep |
for,cross-linked |
R4313 |
T5186 |
T5187 |
nummod |
15,minutes |
R4314 |
T5187 |
T5185 |
pobj |
minutes,for |
R4315 |
T5188 |
T5187 |
prep |
with,minutes |
R4316 |
T5189 |
T5191 |
det |
a,transilluminator |
R4317 |
T5190 |
T5191 |
compound |
UV,transilluminator |
R4318 |
T5191 |
T5188 |
pobj |
transilluminator,with |
R4319 |
T5192 |
T5187 |
acl |
equipped,minutes |
R4320 |
T5193 |
T5192 |
prep |
with,equipped |
R4321 |
T5194 |
T5197 |
det |
a,bulb |
R4322 |
T5195 |
T5197 |
nummod |
312,bulb |
R4323 |
T5196 |
T5197 |
compound |
nm,bulb |
R4324 |
T5197 |
T5193 |
pobj |
bulb,with |
R4325 |
T5198 |
T5168 |
punct |
.,transferred |
R4326 |
T5199 |
T5201 |
amod |
Streptavidin-horseradish,conjugate |
R4327 |
T5200 |
T5201 |
compound |
peroxidase,conjugate |
R4328 |
T5201 |
T5208 |
nsubjpass |
conjugate,used |
R4329 |
T5202 |
T5201 |
cc |
and,conjugate |
R4330 |
T5203 |
T5206 |
det |
the,Substrate |
R4331 |
T5204 |
T5206 |
compound |
LightShift,Substrate |
R4332 |
T5205 |
T5206 |
compound |
Chemiluminescent,Substrate |
R4333 |
T5206 |
T5201 |
conj |
Substrate,conjugate |
R4334 |
T5207 |
T5208 |
auxpass |
were,used |
R4335 |
T5208 |
T5208 |
ROOT |
used,used |
R4336 |
T5209 |
T5210 |
aux |
to,detect |
R4337 |
T5210 |
T5208 |
xcomp |
detect,used |
R4338 |
T5211 |
T5212 |
det |
the,biotin |
R4339 |
T5212 |
T5210 |
dobj |
biotin,detect |
R4340 |
T5213 |
T5214 |
compound |
end-labeled,DNA |
R4341 |
T5214 |
T5208 |
npadvmod |
DNA,used |
R4342 |
T5215 |
T5208 |
punct |
.,used |
R4343 |
T5216 |
T5218 |
det |
The,membranes |
R4344 |
T5217 |
T5218 |
compound |
nylon,membranes |
R4345 |
T5218 |
T5220 |
nsubjpass |
membranes,exposed |
R4346 |
T5219 |
T5220 |
auxpass |
were,exposed |
R4347 |
T5220 |
T5220 |
ROOT |
exposed,exposed |
R4348 |
T5221 |
T5222 |
aux |
to,x-ray |
R4349 |
T5222 |
T5220 |
advcl |
x-ray,exposed |
R4350 |
T5223 |
T5222 |
dobj |
film,x-ray |
R4351 |
T5224 |
T5222 |
prep |
for,x-ray |
R4352 |
T5225 |
T5226 |
quantmod |
1,3 |
R4353 |
T5226 |
T5227 |
nummod |
3,minutes |
R4354 |
T5227 |
T5224 |
pobj |
minutes,for |
R4355 |
T5228 |
T5227 |
prep |
for,minutes |
R4356 |
T5229 |
T5228 |
pobj |
detection,for |
R4357 |
T5230 |
T5220 |
punct |
.,exposed |