CORD-19-Sentences  

CORD-19:11372d2b62ec98cab9cf3f9be6b7cf967627a14a JSONTXT 8 Projects

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Id Subject Object Predicate Lexical cue
TextSentencer_T1 0-110 Sentence denotes CARMA3 Is a Host Factor Regulating the Balance of Inflammatory and Antiviral Responses against Viral Infection
TextSentencer_T2 112-120 Sentence denotes Abstract
TextSentencer_T3 121-635 Sentence denotes Graphical Abstract Highlights d Deficiency of CARMA3 results in the host resistance to RNA viral infection d CARMA3 positively regulates RIG-I/MAVS-mediated NF-kB activation d CARMA3 negatively regulates RIG-I/MAVS-mediated TBK1/ IRF3 activation d CARMA3 negatively suppresses MAVS oligomerization in mitochondran SUMMARY Host response to RNA virus infection is sensed by RNA sensors such as RIG-I, which induces MAVSmediated NF-kB and IRF3 activation to promote inflammatory and antiviral responses, respectively.
TextSentencer_T4 636-810 Sentence denotes Here, we have found that CARMA3, a scaffold protein previously shown to mediate NF-kB activation induced by GPCR and EGFR, positively regulates MAVS-induced NF-kB activation.
TextSentencer_T5 811-953 Sentence denotes However, our data suggest that CARMA3 sequesters MAVS from forming high-molecular-weight aggregates, thereby suppressing TBK1/IRF3 activation.
TextSentencer_T6 954-1112 Sentence denotes Interestingly, following NF-kB activation upon virus infection, CARMA3 is targeted for proteasome-dependent degradation, which releases MAVS to activate IRF3.
TextSentencer_T7 1113-1353 Sentence denotes When challenged with vesicular stomatitis virus or influenza A virus, CARMA3-deficient mice showed reduced disease symptoms compared to those of wild-type mice as a result of less inflammation and a stronger ability to clear infected virus.
TextSentencer_T8 1354-1507 Sentence denotes Altogether, our results reveal the role of CARMA3 in regulating the balance of host antiviral and pro-inflammatory responses against RNA virus infection.
TextSentencer_T9 1509-1849 Sentence denotes In Brief Jiang et al. reveal that CARMA3, a gene located in a host genomic locus that contributes to the host's susceptibility to RNA respiratory virus infection, is a key molecule that controls the balance of proinflammatory and antiviral responses, through positively regulating NF-kB activation but negatively regulating IRF3 activation.
TextSentencer_T10 1850-2092 Sentence denotes The innate immune system is the first line of host defense against infection, which is essential for initial detection and recognition of pathogens, activation of acute anti-microbial responses, and subsequent activation of adaptive immunity.
TextSentencer_T11 2093-2374 Sentence denotes This system utilizes pattern recognition receptors such as Toll-like receptors (TLRs) on the cell surface and cytosolic retinoic acid-inducible gene 1 (RIG-I)-like receptors (RLRs) to detect the invading pathogen (Baum and García-Sastre, 2011; Janeway, 2013; Jiang et al., 2011a) .
TextSentencer_T12 2375-2448 Sentence denotes The RLR family of proteins is crucial for detecting viral RNA in cytosol.
TextSentencer_T13 2449-2579 Sentence denotes It is composed of RIG-I, melanoma differentiation-associated protein 5 (MDA5), and laboratory of genetics and physiology 2 (LGP2).
TextSentencer_T14 2580-2878 Sentence denotes RIG-I senses 5 0 -triphosphate RNA as well as short (<2-kb) double-stranded RNA (dsRNA) and is essential for innate immunity to many single-stranded RNA (ssRNA) viruses, including influenza A virus (IAV), Sendai virus (SeV), respiratory syncytial virus (RSV), vesicular stomatitis virus (VSV), etc.
TextSentencer_T15 2879-3148 Sentence denotes In contrast, MDA5 recognizes longer dsRNA (>2 kb) and protects the host from infection of encephalomyocarditis virus (EMCV), Theiler's virus, mengovirus, murine norovirus, and murine hepatitis virus (Kato et al., 2006; McCartney et al., 2008; Roth-Cross et al., 2008) .
TextSentencer_T16 3149-3276 Sentence denotes Without stimulation, RIG-I is in the closed conformation with the N-terminal CARD domains bound to the central helicase domain.
TextSentencer_T17 3277-3492 Sentence denotes Upon binding of the CTD to viral RNA, RIG-I undergoes conformational changes, oligomerization, and exposure of the CARD domains to recruit a signaling adaptor called mitochondrial antiviral-signaling protein (MAVS).
TextSentencer_T18 3493-3608 Sentence denotes MAVS contains an N-terminal CARD domain, a proline-rich region, and a transmembrane domain (TMD) at the C terminus.
TextSentencer_T19 3609-3777 Sentence denotes The CARD domain is important for its interaction with upstream RLRs (Goubau et al., 2014; Kawai et al., 2005; Meylan et al., 2005; Seth et al., 2005; Xu et al., 2005) .
TextSentencer_T20 3778-3937 Sentence denotes The proline-rich region is required for the recruitment of multiple E3 ligases, such as tumor necrosis factor (TNF) receptor (TNFR)-associated factors (TRAFs).
TextSentencer_T21 3938-4018 Sentence denotes The TMD domain is key for MAVS localization at the mitochondrial outer membrane.
TextSentencer_T22 4019-4246 Sentence denotes Upon activation, MAVS forms a functional prion-like structure at mitochondria and works as a platform to form a MAVS signalosome that further activates IKKa/IKKb/NEMO signaling and TBK1/ IKKε/NEMO signaling (Liu et al., 2013) .
TextSentencer_T23 4247-4417 Sentence denotes Activation of IKKa/IKKb/NEMO triggers activation of transcription factor necrosis factor kB (NF-kB) and, thus, induction of proinflammatory cytokines (Liu and Gu, 2011) .
TextSentencer_T24 4418-4548 Sentence denotes These cytokines are important to induce inflammatory responses and to restrict viral replication and spread (Dienz et al., 2012) .
TextSentencer_T25 4549-4770 Sentence denotes Elevated levels of proinflammatory cytokines are closely correlated with severity of clinical diseases, including airway inflammation and acute lung injury during influenza infection in children (Chiaretti et al., 2013) .
TextSentencer_T26 4771-4993 Sentence denotes On the other hand, activation of the TBK1/IKKε/NEMO complex leads to activation of IRF3 and production type I interferons (IFNs), including IFNa and IFNb (Fitzgerald et al., 2003; Sankar et al., 2006; Zhong et al., 2008) .
TextSentencer_T27 4994-5244 Sentence denotes Type I IFNs are potent inducers for the expression of hundreds of IFN-stimulated genes (ISGs) in paracrine and autocrine fashions, which induce a cellular antiviral state on the target cells (Au et al., 1995; Schafer et al., 1998; Sun et al., 2010) .
TextSentencer_T28 5245-5547 Sentence denotes Recent mechanistic studies have found that, upon activation, MAVS forms a prion-like fibril at mitochondria and acts as an active platform for the recruitment of E3 ligases, including TRAF6, TRAF2, and TRAF5, through distinct TRAF-binding domains (Hou et al., 2011; Liu et al., 2013; Xu et al., 2014) .
TextSentencer_T29 5548-5751 Sentence denotes These E3 ligases are essential for signaling downstream of MAVS, regulating the polyubiquitination chains, and recruiting downstream IKKa/IKKb/NEMO complex and TBK1/IKKε/NEMO complex (Liu et al., 2013) .
TextSentencer_T30 5752-5931 Sentence denotes It has been an important question why different individuals display highly variable systemic symptoms across the infected populations during outbreaks of seasonal virus infection.
TextSentencer_T31 5932-6243 Sentence denotes To study how genetic polymorphisms contribute to this variation, Ferris et al. (2013) crossed different incipient lines of mice, which exhibit a broad range of susceptibility to IAV infection, and identified three novel quantitative trait loci (QTLs) that may contribute to the susceptibility for IAV infection.
TextSentencer_T32 6244-6310 Sentence denotes One of these QTLs, Hrl4, contains 13 genes (Ferris et al., 2013) .
TextSentencer_T33 6311-6514 Sentence denotes Among these genes, most of them do not have a clear link to the antivirus response except for the CARD10 gene (Ferris et al., 2013) , which encodes a scaffold protein named CARMA3 (Jiang and Lin, 2012) .
TextSentencer_T34 6515-6709 Sentence denotes CARMA3 contains multiple protein-protein interaction domains, including an N-terminal CARD domain, a coiled-coil domain, and a C-terminal MAGUK domain (Gaide et al., 2001; Jiang and Lin, 2012) .
TextSentencer_T35 6710-6837 Sentence denotes CARMA3 is expressed only in non-hematopoietic cells, while CARMA1, a related protein, is expressed only in hematopoietic cells.
TextSentencer_T36 6838-6937 Sentence denotes The CARMA proteins share similar structure and functions, albeit with distinct tissue distribution.
TextSentencer_T37 6938-7262 Sentence denotes Upon activation, CARMA proteins form a complex with B cell lymphoma 10 (BCL10) and caspase-like protein mucosa-associated lymphoid tissue lymphoma translocation protein 1 (MALT1), and the CARMA-BCL10-MALT1 (CBM) complex functions to activate the downstream IKK complex, leading to activation of NF-kB (Jiang and Lin, 2012) .
TextSentencer_T38 7263-7551 Sentence denotes Previous studies have shown that CARMA3 is crucial in mediating G protein-coupled receptor (GPCR)-and epidermal growth factor receptor (EGFR)-, but not TLR-or TNFR-, induced NF-kB activation (Grabiner et al., 2007; Jiang et al., 2011b; Klemm et al., 2007; McAllister-Lucas et al., 2007) .
TextSentencer_T39 7552-7659 Sentence denotes However, it is unknown whether CARMA3 also is involved in regulating the host responses to viral infection.
TextSentencer_T40 7660-7855 Sentence denotes It is known that virus infection induces robust NF-kB activation in host cells to trigger expression of pro-inflammatory cytokines, which help to inhibit virus replication and spread in the host.
TextSentencer_T41 7856-8050 Sentence denotes Since CARMA3 is located in the genomic locus that contributes to host's susceptibility to viral infection and is involved in NF-kB signaling, we investigated its role in host antiviral response.
TextSentencer_T42 8051-8198 Sentence denotes Our data suggest that CARMA3 contributes to inflammatory and antiviral responses via regulating RIG-I/MAVS-induced TBK1/ IRF3 and NF-kB activation.
TextSentencer_T43 8199-8498 Sentence denotes We have found that CARMA3 deficiency resulted in the defect in VSV-and RNA-induced NF-kB activation and production of pro-inflammatory cytokines, but, surprisingly, enhanced TBK1/IRF3 activation and production of type I IFN, thereby displaying a reduced viral load in VSV-infected cells and tissues.
TextSentencer_T44 8499-8615 Sentence denotes Mechanistic studies showed that CARMA3 inhibited IRF3 activation through blocking the formation of MAVS aggregation.
TextSentencer_T45 8616-8790 Sentence denotes Together, these results reveal that CARMA3 is a key molecule that regulates the balance between RNA virus infection-induced inflammatory and antiviral innate immune response.
TextSentencer_T46 8791-8965 Sentence denotes Recent genetic studies indicate that the CARD10 gene is located in the genomic locus that may contribute to the host's susceptibility to IAV infection (Ferris et al., 2013) .
TextSentencer_T47 8966-9224 Sentence denotes To explore the biological significance of CARMA3 in host antiviral response, we challenged wild-type (WT) and CARMA3À/À (knockout [KO]) mice with IAV strain PR8, a strain that has been highly adapted in mice and causes disease symptoms and mortality in mice.
TextSentencer_T48 9225-9334 Sentence denotes IAV infection caused a significant body weight loss of WT mice, but not that of CARMA3 KO mice ( Figure 1A ).
TextSentencer_T49 9335-9460 Sentence denotes Viral yield was much higher in lungs of WT mice than in those of CARMA3 KO mice at 2 days post-infection (dpi) ( Figure 1B) .
TextSentencer_T50 9461-9654 Sentence denotes Similarly, lung injury caused by IAV infection was greatly attenuated in CARMA3 KO mice ( Figure S1A ), suggesting that CARMA3 plays a negative role in antiviral response against IAV infection.
TextSentencer_T51 9655-9998 Sentence denotes Consistently, we found that CARMA3 KO mice produced more type I IFN IFNb in lungs compared to WT mice ( Figure 1C ), but expressed less pro-inflammatory cytokines IL-6, IL-1a, and IL-1b following IAV infection (Figures 1D and S1B-S1D), suggesting that CARMA3 also plays a positive role in inflammation in response to influenza virus infection.
TextSentencer_T52 9999-10102 Sentence denotes VSV is another negative sense, ssRNA virus, and its infection induces a flu-like symptom like IAV does.
TextSentencer_T53 10103-10244 Sentence denotes To examine whether CARMA3 also contributes to the host responses to VSV infection, we challenged WT and CARMA3 KO mice intranasally with VSV.
TextSentencer_T54 10245-10382 Sentence denotes Since VSV is a neurotropic virus and brain is one of primary targeting tissues of VSV, we examined the viral load in brain of these mice.
TextSentencer_T55 10383-10650 Sentence denotes Interestingly, we found that viral loads were significantly higher in the olfactory bulbs (OBs) of the brain in WT mice than those in CARMA3 KO mice ( Figures 1E and 1F ), although smaller differences were found in spleen and lung of these mice (Figures S1E and S1F).
TextSentencer_T56 10651-10922 Sentence denotes Consistent with the low viral load in CARMA3 KO mice, we found that CARMA3 KO mice produced significantly higher levels of local IFNb in OBs ( Figure 1G ), whereas the expressions of IFNg and G-CSF in the brain of WT and CARMA3 KO mice were similar (Figures S1G and S1H).
TextSentencer_T57 10923-11185 Sentence denotes Similar to the response to IAV infection, we found that production of pro-inflammatory cytokines, such as IL-6, IL-1a, IL-1b, and TNF-a, in the sera of CARMA3 KO mice was significantly reduced compared to WT mice 2 days following VSV infection (Figures S1I-S1M).
TextSentencer_T58 11186-11449 Sentence denotes Together, these results further support the above observations that CARMA3 plays a negative role in regulating antiviral responses in the host, but it plays a positive role in regulating the expression of pro-inflammatory cytokines in response to viral infection.
TextSentencer_T59 11450-11641 Sentence denotes Since CARMA3 is only expressed in non-hematopoietic cells, the observed effect of CARMA3 deficiency on viral infection in vivo might be compromised by the contribution of hematopoietic cells.
TextSentencer_T60 11642-11869 Sentence denotes To reveal the molecular mechanism by which CARMA3 affects inflammatory and antiviral responses to virus infection, we prepared primary WT and CARMA3 KO mouse embryonic fibroblast (MEF) cells and stimulated these cells with VSV.
TextSentencer_T61 11870-12065 Sentence denotes Consistent with the in vivo data, we found that VSV infection in WT MEF cells induced significantly higher levels of IL-6 mRNA and protein than those in CARMA3 KO MEF cells (Figures 2A and 2B ).
TextSentencer_T62 12066-12233 Sentence denotes Since IL-6 is a well-known target of NF-kB, we The 6-to 8-week-old CARMA3 WT and KO mice (n R 5 per group) were intranasally inoculated with 600 PFUs of IAV per mouse.
TextSentencer_T63 12234-12330 Sentence denotes The weight loss was monitored daily for 14 days and plotted. (B-D) Mice were infected as in (A).
TextSentencer_T64 12331-12959 Sentence denotes At 2 dpi, mouse lungs were harvested. (B) Viral loads were tittered and plotted. (C) At 4 dpi, lungs were harvested and cytokine production in mRNA level was measured by real-time qPCR. (D) At 4 dpi, lung fluid was harvested and cytokine production was measured by ELISA essay. (E-G) The 6-to 8-week-old CARMA3 WT and KO mice (n R 5 per group) were intranasally inoculated with 10 7 PFUs of VSV-GFP per mouse. (E) At 2 dpi, olfactory bulbs (OBs) were harvested and imaged. (F) Viral loads in OBs were tittered and plotted in log scale. (G) At 1 dpi, OBs were harvested and cytokine production in mRNA level was measured by qPCR.
TextSentencer_T65 12960-13008 Sentence denotes The p values were generated by Student's t test.
TextSentencer_T66 13009-13158 Sentence denotes examined the NF-kB activation and found that NF-kB activation was partially defective in CARMA3 KO MEF cells following VSV stimulation ( Figure 2C ).
TextSentencer_T67 13159-13273 Sentence denotes It has been shown that dsRNA virus infection can induce NF-kB through both TLR signaling and RIG-I/MAVS signaling.
TextSentencer_T68 13274-13531 Sentence denotes Given the fact that CARMA3 is not required for TLR-induced NF-kB activation (Grabiner et al., 2007) , we hypothesized that CARMA3 only mediates RIG-I/ MAVS-induced NF-kB, which can explain why VSV-induced NF-kB was only partial defective in CARMA3 KO cells.
TextSentencer_T69 13532-13678 Sentence denotes To test this hypothesis, we stimulated WT and CARMA3 KO MEF cells with RIG-I-specific ligands poly(I:C) or 5 0 triphosphate dsRNA (5 0 ppp-dsRNA).
TextSentencer_T70 13679-13855 Sentence denotes Consistently, we found that NF-kB activation and production of IL-6 were severely defective in CARMA3 KO MEF cells in response to these stimuli ( Figures 2D-2F , S2A, and S2B).
TextSentencer_T71 13856-14004 Sentence denotes Furthermore, we immortalized CARMA3 WT and KO MEF cells and reconstituted the KO cells with HA-tagged CARMA3 to its endogenous level ( Figure S2C ).
TextSentencer_T72 14005-14076 Sentence denotes This reconstitution of CARMA3 rescued the phenotypes ( Figures 2G-2J ).
TextSentencer_T73 14077-14355 Sentence denotes To find out if this is also the case in other cell types, we used BEAS-2B cells, a primary and immortalized human lung epithelial cell line, with knockdown of CARMA3 expression via small hairpin RNA (shRNA) ( Figure S2D ), and consistent data were observed (Figures 2K and 2L) .
TextSentencer_T74 14356-14498 Sentence denotes Type I IFNs such as IFNa and IFNb are important antiviral cytokines that are induced by RIG-I/MAVS-mediated activation of TBK1-IRF3 signaling.
TextSentencer_T75 14499-14654 Sentence denotes We found that VSV infection induced significantly higher levels of IFNb mRNA and protein in CARMA3 KO MEF cells than in WT MEF cells ( Figures 3A and 3B ).
TextSentencer_T76 14655-14828 Sentence denotes Consistently, IRF3 phosphorylation at S396 and TBK1 phosphorylation were induced at higher levels in CARMA3 KO MEF cells at 6 and 8 hr following VSV infection ( Figure 3C ).
TextSentencer_T77 14829-15003 Sentence denotes To determine if this observation is specific for viral infection, we stimulated these cells with RIG-I-specific ligands, 5 0 triphosphate dsRNA (5 0 ppp-dsRNA), or poly(I:C).
TextSentencer_T78 15004-15121 Sentence denotes Consistently, production of IFN and IRF3 activation were enhanced in CARMA3 KO MEF cells (Figures 3D-3F and S3A-S3E).
TextSentencer_T79 15122-15232 Sentence denotes Furthermore, the virus load was reduced in CARMA3 KO MEF cells compared to that in WT MEF cells ( Figure 3G ).
TextSentencer_T80 15233-15365 Sentence denotes To further confirm the above data, we reconstituted CARMA3 KO MEF cells with either a CARMA3 expression plasmid or a control vector.
TextSentencer_T81 15366-15491 Sentence denotes We found that the phenotypes observed in CARMA3 KO MEFs were reverted in CARMA3-reconstituted KO MEF cells ( Figures 3H-3K) .
TextSentencer_T82 15492-15709 Sentence denotes Consistently, knockdown of CARMA3 in human lung epithelial cells (BEAS-2B) rendered stronger TBK1/IRF3 phosphorylation and the higher expression level of type I IFN following VSV infection ( Figures 3L, 3M , and S3F).
TextSentencer_T83 15710-16061 Sentence denotes Furthermore, we isolated primary lung cells from CARMA3 WT and KO mice, and higher IFNb was detected in the CARMA3 KO lung cells compared to that in WT cells ( Figure S3G ), although we were not able to detect any significant difference in IL-6 production, which likely was due to the high basal level of IL-6 production in these cells ( Figure S3H ).
TextSentencer_T84 16062-16568 Sentence denotes Previous studies have shown that BCL10 and MALT1 bind to CARMA3 to form the CBM complex upon EGFR-and GPCRinduced NF-kB activation (Grabiner et al., 2007; RNA was isolated and cytokine production in mRNA level was measured by real-time qPCR, normalized to the internal control GAPDH. (B and E) Cytokine production in culture supernatants was measured by ELISA assay. (C and F) Nuclear fractions were isolated and electrophoretic mobility shift assay (EMSA) analysis was performed to check NF-kB activation.
TextSentencer_T85 16569-16726 Sentence denotes Oct-1 served as an internal control. (G-J) E1A-immortalized CARMA KO MEF cells were generated and reconstituted with HA-tagged CARMA3 or vector as indicated.
TextSentencer_T86 16727-17030 Sentence denotes These cells were infected with VSV at MOI = 3 (G and H) or transfected with poly(I:C) (I and J) for the indicated time. (G and I) Cytokine production in culture supernatants was measured by ELISA assay. (H and J) Nuclear fractions were isolated and EMSA analysis was performed to check NF-kB activation.
TextSentencer_T87 17031-17317 Sentence denotes Oct-1 served as an internal control. (K and L) BEAS-2B cells with stable knockdown by shRNA against CARMA3 or control were established and infected with VSV at MOI = 3 for the indicated time. (K) Nuclear fractions were isolated and EMSA analysis was performed to check NF-kB activation.
TextSentencer_T88 17318-17503 Sentence denotes Oct-1 serves as an internal control. (L) RNA was isolated and cytokine production in mRNA level was measured by real-time qPCR, normalized to the internal control GAPDH. et al., 2007a).
TextSentencer_T89 17504-17616 Sentence denotes Next we wanted to determine if BCL10 and MALT1 play a similar function as CARMA3 in response to virus infection.
TextSentencer_T90 17617-17853 Sentence denotes Similar to CARMA3 deficiency, BCL10 deficiency led to reduced expression of IL-6 but enhanced expression of IFNb and a higher level of IRF3 phosphorylated upon VSV infection or poly(I:C) treatment in primary MEF cells ( Figures 4A-4E) .
TextSentencer_T91 17854-17957 Sentence denotes Consistently, we observed reduced viral load in OBs of BCL10 KO mice compared to WT mice ( Figure 4F ).
TextSentencer_T92 17958-18054 Sentence denotes These results indicate that BCL10 plays a similar role as CARMA3 in response to virus infection.
TextSentencer_T93 18055-18140 Sentence denotes However, MALT1 deficiency did not result in defective IL-6 production ( Figure S4A ).
TextSentencer_T94 18141-18303 Sentence denotes Although IFNb expression was slightly increased in MALT1 KO MEF cells ( Figure S4B ), IFNa expression was similar to that in WT MEF cells ( Figures S4C and S4D) .
TextSentencer_T95 18304-18426 Sentence denotes Consistently, viral infection-induced NF-kB activation was not significantly changed in MALT1 KO MEF cells ( Figure S4E ).
TextSentencer_T96 18427-18598 Sentence denotes Although IRF3 phosphorylation was slightly enhanced in MALT1 KO MEF cells ( Figure S4F ), it was not as significant as what we observed in CARMA3 KO or BCL10 KO MEF cells.
TextSentencer_T97 18599-18733 Sentence denotes Together, these data suggest that MALT1 does not play a dominant role in regulating viral infection-induced NF-kB and IRF3 activation.
TextSentencer_T98 18734-19067 Sentence denotes CARMA3 Regulates RIG-I/MAVS-Mediated IKK/NF-kB Activation and TBK1/IRF3 Activation in an Independent Manner Interestingly, we found that VSV infection-induced NF-kB activation could be detected as early as the first hour post-infection, whereas IRF3 phosphorylation was not detectable until 4 hr post-infection ( Figures 2C and 3C ).
TextSentencer_T99 19068-19320 Sentence denotes Since VSV infectioninduced NF-kB activation was partially defective but IRF3 activation was enhanced in CARMA3 KO MEF cells, we decided to examine whether NF-kB-targeted genes expressed at early time points post-infection might inhibit IRF3 activation.
TextSentencer_T100 19321-19459 Sentence denotes To test this possibility, WT MEF cells were pre-treated with NF-kB nuclear translocation inhibitor (NF-kBi) for 1 hr before VSV infection.
TextSentencer_T101 19460-19708 Sentence denotes Although NF-kBi pretreatment partially inhibited NF-kB activation ( Figure 5A ), it did not enhance but instead partially inhibited IRF3 phosphorylation ( Figure 5B ), indicating that it is not NF-kB-inducing genes suppressing IRF3 phosphorylation.
TextSentencer_T102 19709-19987 Sentence denotes To further support this conclusion, we transfected IkBa super-repressor (SR) mutant into immortalized MEF cells, and we found that, although expression of IkBa SR mutant could suppress VSV-induced NF-kB activation, it could not enhance IRF3 phosphorylation (Figures 5C and 5D) .
TextSentencer_T103 19988-20188 Sentence denotes Finally, to determine whether newly synthesized proteins regulate IRF3 activation, primary MEF cells were pretreated with protein synthesis inhibitor cycloheximide (CHX) before poly(I:C) transfection.
TextSentencer_T104 20189-20255 Sentence denotes Pretreatment with CHX did not alter IRF3 activation ( Figure 5E ).
TextSentencer_T105 20256-20488 Sentence denotes Therefore, the impaired NF-kB activation at early hours postinfection is not the cause for the enhanced IRF3 activation in CARMA3 KO MEF cells, indicating that CARMA3 regulates NF-kB and IRF3 activation through an independent event.
TextSentencer_T106 20489-20737 Sentence denotes CARMA3 and BCL10 Regulate RIG-I/MAVS Signaling by Binding to MAVS To determine the molecular mechanism by which CARMA3 and BCL10 regulate viral infection-induced NF-kB and IRF3 activation, CARMA3 or BCL10 was knocked down by shRNA in HEK293T cells.
TextSentencer_T107 20738-21004 Sentence denotes Overexpression of MAVS induced robust expression of NF-kB-dependent and IRF3-dependent luciferase reporters in control cells, whereas defective NF-kB activation and enhanced IRF3 activation were observed in CARMA3 or BCL10 knockdown cells (Figures 5F, 5I , and S5A).
TextSentencer_T108 21005-21270 Sentence denotes However, when TBK1 or IKKε was overexpressed in these cells, knockdown of CARMA3 or BCL10 did not alter activation of NF-kB or IRF3 ( Figures 5G, 5H , 5J, 5K, S5B, and S5C), indicating that CARMA3 and BCL10 function downstream of MAVS but upstream of TBK1 and IKKε.
TextSentencer_T109 21271-21419 Sentence denotes Since CARMA3 is a scaffold protein with multiple protein-protein interaction domains, we examined whether CARMA3 is physically associated with MAVS.
TextSentencer_T110 21420-21583 Sentence denotes When overexpressed in HEK293T cells, CARMA3 bound to MAVS but only weakly to RIG-I ( Figure 6A ), whereas BCL10 interacted with both MAVS and RIG-I ( Figure S6A ).
TextSentencer_T111 21584-21677 Sentence denotes In contrast, MALT1 could not bind to MAVS when overexpressed in HEK293T cells ( Figure S6B ).
TextSentencer_T112 21678-21799 Sentence denotes Furthermore, endogenous MAVS was capable of interacting with overexpressed CARMA3 or BCL10 in HEK293T cells (Figure 6B ).
TextSentencer_T113 21800-22023 Sentence denotes More interestingly, inducible interactions, but not constitutive interactions, were observed between endogenous MAVS and BCL10 or between endogenous MAVS and CARMA3 in CARMA3-reconstituted KO MEF cells (Figures 6C and 6D) .
TextSentencer_T114 22024-22298 Sentence denotes The dynamic interaction between MAVS and CARMA3 could be detected in both primary BCL10 Het and KO MEF cells ( Figure 6E ), whereas the MAVS-BCL10 interaction could only be detected in CARMA3 KO cells reconstituted with CARMA3, but not with its vector control ( Figure 6F ).
TextSentencer_T115 22299-22412 Sentence denotes These data suggested that BCL10 might be recruited to the MAVS-containing complex via CARMA3, but not vice versa.
TextSentencer_T116 22413-22584 Sentence denotes To address whether CARMA3 binds to MAVS through CARD-CARD interaction, we co-transfected HEK293T cells with MAVS and CARMA3 WT or truncate mutants ( Figures S6C and S6D ).
TextSentencer_T117 22585-22709 Sentence denotes We found that the C-terminal GUK domain, but not the CARD domain, of CARMA3 appeared to be critical for the binding to MAVS.
TextSentencer_T118 22710-22979 Sentence denotes It has been shown that infection with SeV, another negative, single-stranded virus, induces the formation of large MAVS aggregates, which is functionally important in mediating IRF3 activation (He et al., 2015; Hou et al., 2011; Moresco et al., 2011; Xu et al., 2014) .
TextSentencer_T119 22980-23067 Sentence denotes Since CARMA3 binds to MAVS, we hypothesized that CARMA3 may block MAVS oligomerization.
TextSentencer_T120 23068-23226 Sentence denotes When CARMA3 was overexpressed together with RIG-I in HEK293T cells, CARMA3 was detected in the mitochondrial fraction in a dosedependent manner ( Figure 7A ).
TextSentencer_T121 23227-23330 Sentence denotes In contrast, only a very small fraction of RIG-I was isolated together with mitochondria ( Figure 7A ).
TextSentencer_T122 23331-23407 Sentence denotes This suggests that CARMA3 can be recruited to mitochondria and bind to MAVS.
TextSentencer_T123 23408-23622 Sentence denotes Importantly, overexpression of CARMA3 was able to disrupt the formation of endogenous MAVS aggregates in semi-denaturing detergent agarose gel electrophoresis (SDD-AGE) gel, which is 2% SDS resistant ( Figure 7A ).
TextSentencer_T124 23623-23679 Sentence denotes This is also the case for BCL10 ( Figures S7A and S7B ).
TextSentencer_T125 23680-23819 Sentence denotes To further confirm that CARMA3 blocks MAVS from forming aggregates, we infected primary MEF cells with VSV and isolated crude mitochondria.
TextSentencer_T126 23820-24124 Sentence denotes We observed significantly stronger formation of endogenous MAVS aggregates in CARMA3 KO MEF cells at 6 hr post-infection ( Figure 7B) , and, consistently, this stronger aggregation of MAVS in CARMA3 KO cells could be reverted when CARMA3 was reconstituted back into the CARMA3 KO MEF cells ( Figure 7C ).
TextSentencer_T127 24125-24248 Sentence denotes Together, these results indicate that CARMA3 plays a negative role in the assembly of MAVS aggregates upon virus infection.
TextSentencer_T128 24249-24436 Sentence denotes Due to the lack of anti-CARMA3 antibody suitable for detecting endogenous CARMA3 protein by immunoblotting, we generated stable cells that express HA-tagged CARMA3 in CARMA3 KO MEF cells.
TextSentencer_T129 24437-24549 Sentence denotes Interestingly, we found that HA-tagged CARMA3 protein was gradually reduced upon VSV infection (Figures 7D-7G) .
TextSentencer_T130 24550-24684 Sentence denotes However, this reduction in CARMA3 protein was rescued by pretreatment of cells with proteasome inhibitor MG132 ( Figures 7E and 7F ).
TextSentencer_T131 24685-24777 Sentence denotes This indicated that, following VSV infection, CARMA3 is targeted for proteasome degradation.
TextSentencer_T132 24778-24982 Sentence denotes Therefore, we performed immunoprecipitaion with anti-HA agarose, and we found that a high amount of K48-ubiquitinated CARMA3 was observed in the presence of MG132 at 4 hr post-VSV infection ( Figure 7F ).
TextSentencer_T133 24983-25110 Sentence denotes However, in contrast to CARMA3, the protein level of BCL10 was not significantly altered following VSV infection ( Figure 7G ).
TextSentencer_T134 25111-25232 Sentence denotes Together, these results suggest that CARMA3 is targeted to proteasome-mediated degradation following RNA virus infection.
TextSentencer_T135 25233-25310 Sentence denotes In this study, we reveal that CARMA3 is a regulator of RIG-I/ MAVS signaling.
TextSentencer_T136 25311-25438 Sentence denotes We have found that CARMA3 regulates RIG-I/ MAVS-mediated NF-kB and TBK1/IRF3 activation in a twophase mechanism ( Figure S7C ).
TextSentencer_T137 25439-25602 Sentence denotes Upon RIG-I activation, MAVS is first activated at early time points following viral infection, which can activate IKKa/IKKb/NEMO in a CARMA3/BCL10dependent manner.
TextSentencer_T138 25603-25852 Sentence denotes However, in this early phase of post-infection, MAVS is sequestered by the CARMA3/BCL10 complex via interaction, and, therefore, it cannot form the high-molecular weight aggregates, which is required for downstream activation of TBK1/IRF3 signaling.
TextSentencer_T139 25853-26011 Sentence denotes With time, CARMA3 is targeted to a proteasome-mediated degradation, which releases MAVS that forms the functional aggregates and activate TBK1/IRF3 signaling.
TextSentencer_T140 26012-26212 Sentence denotes Therefore, CARMA3 functions as a host factor to regulate the balance of the RIG-I/MAVS-induced two downstream signaling pathways for antiviral innate immune response and the pro-inflammatory response.
TextSentencer_T141 26213-26496 Sentence denotes On one hand, CARMA3 plays a positive role in MAVS-induced NF-kB activation, leading to the induction of pro-inflammatory cytokines, but, on the other hand, it plays a negative role in MAVS-induced TBK1/IRF3 activation and production of antiviral cytokines, type I IFNs (Figure S7C) .
TextSentencer_T142 26497-26636 Sentence denotes However, the precise mechanism as to how CARMA3 is targeted for ubiquitination-based proteasome degradation requires further investigation.
TextSentencer_T143 26637-26823 Sentence denotes In addition, it will be interesting to see if CARMA3 plays a general effect in response to other RNA viruses as well as DNA viruses that are typically not recognized by cytoplasmic RLRs.
TextSentencer_T144 26824-26919 Sentence denotes Different individuals display highly variable systemic symptoms in response to viral infection.
TextSentencer_T145 26920-26995 Sentence denotes However, host factors contributing to this variability are largely unknown.
TextSentencer_T146 26996-27198 Sentence denotes Recent studies suggest that the CARD10 gene, which encodes CARMA3, is located in a genomic locus that contributes to the host's susceptibility to RNA virus, such as IAV infection (Ferris et al., 2013) .
TextSentencer_T147 27199-27407 Sentence denotes Our data, showing the distinct regulation of CARMA3 in the pro-inflammatory response and the antiviral response, suggest that CARMA3 may be a gene contributing to the host's susceptibility to viral infection.
TextSentencer_T148 27408-27671 Sentence denotes Therefore, it will be important to find out whether CARMA3 protein expression levels or particular CARMA3 polymorphisms exist in different human populations, which may explain the variable susceptibility among different populations in response to virus infection.
TextSentencer_T149 27672-27854 Sentence denotes CARMA3 is distinguished from many other mediators downstream of MAVS identified so far, which are either positive or negative mediators for both NF-kB activation and IRF3 activation.
TextSentencer_T150 27855-28037 Sentence denotes These mediators include NEMO, TRAF6, A20, and CYLD (Friedman et al., 2008; Liu et al., 2013; Maelfait et al., 2012; Parvatiyar et al., 2010; Saitoh et al., 2005; Zhao et al., 2007) .
TextSentencer_T151 28038-28136 Sentence denotes In contrast, CARMA3 deficiency led to reduced NF-kB activation but an increase in IRF3 activation.
TextSentencer_T152 28137-28250 Sentence denotes CARD9 is structurally related to CARMA3 and contains a CARD domain and a coiled-coil domain, but no MAGUK domain.
TextSentencer_T153 28251-28297 Sentence denotes CARD9 is primarily expressed in myeloid cells.
TextSentencer_T154 28298-28592 Sentence denotes In bone marrow-derived dendritic cells (BMDCs), CARD9 deficiency resulted in defects in NF-kB activation and production of pro-inflammatory cytokines, including IL-6 and IL-1b, in response to 5 0 ppp dsRNA treatment; however, it did not alter the production of type I IFN (Poeck et al., 2010) .
TextSentencer_T155 28593-28652 Sentence denotes In addition to CARD9, CARMA1 is expressed in myeloid cells.
TextSentencer_T156 28653-28811 Sentence denotes It will be interesting to find out how CARMA1, the counterpart of CARMA3 in hematopoietic cells, functions in mediating RIG-I/MAVS signaling in myeloid cells.
TextSentencer_T157 28812-28884 Sentence denotes In contrast to CARMA1, CARMA3, or CARD9, BCL10 is universally expressed.
TextSentencer_T158 28885-29075 Sentence denotes BCL10 functions similarly to CARD9 in BMDCs in response to 5 0 ppp dsRNA treatment, whereas, in primary MEF cells, it functions similarly to CARMA3 upon VSV infection or poly(I:C) treatment.
TextSentencer_T159 29076-29166 Sentence denotes This suggests that BCL10 may regulate RIG-I/MAVS signaling in a cell-type-specific manner.
TextSentencer_T160 29167-29288 Sentence denotes During RNA virus infection, NF-kB activation can be induced through TLR-dependent and TLR-independent signaling pathways.
TextSentencer_T161 29289-29417 Sentence denotes It has been demonstrated that CARMA3 is not required for TLR-induced NF-kB activation (Jiang et al., 2011b; Pan and Lin, 2013) .
TextSentencer_T162 29418-29638 Sentence denotes In this study, we found CARMA3 deficiency induced only partial defects in NF-kB activation, suggesting that CARMA3 may play an important role in TLR-independent NF-kB activation, which is induced by RIG-I/MAVS signaling.
TextSentencer_T163 29639-29937 Sentence denotes TLR-dependent NF-kB activation may play dominant roles in the induction of local IL-6 production in non-hematopoietic cells following RNA viral infection, which may explain why we do not observe a significant effect of CARMA3 deficiency in local IL-6 mRNA production in OBs following VSV infection.
TextSentencer_T164 29938-30108 Sentence denotes Virus infection-induced NF-kB activation promotes expression of pro-inflammatory cytokines and chemokine, which are crucial to trigger inflammatory responses in the host.
TextSentencer_T165 30109-30227 Sentence denotes During viral infection, it is important to keep the inflammatory response under control to avoid severe tissue damage.
TextSentencer_T166 30228-30314 Sentence denotes Overly robust NF-kB activation or inflammation can lead to severe health consequences.
TextSentencer_T167 30315-30586 Sentence denotes For example, Ebola virus, a negative sense, singlestranded virus, is a highly virulent pathogen that causes a frequently lethal hemorrhagic fever syndrome, which is well correlated with the high inflammatory response that is induced in the host (Rasmussen et al., 2014) .
TextSentencer_T168 30587-30736 Sentence denotes Therefore, it is important to regulate inflammatory response to a safe level to prevent severe tissue damage in such patients during viral infection.
TextSentencer_T169 30737-30836 Sentence denotes CARMA3 deficiency leads to a reduced NF-kB activation and production of pro-inflammatory cytokines.
TextSentencer_T170 30837-31176 Sentence denotes Challenging WT mice with IAV induced a strong production of pro-inflammatory cytokines, including IL-6, and severe inflammation, lung injury, and significant weight loss, which were attenuated in CARMA3 KO mice, indicating that CARMA3 is a key molecule to regulating inflammatory responses in the host and potentially a therapeutic target.
TextSentencer_T171 31177-31371 Sentence denotes Previous studies indicated that NF-kB activation contributes to the production of type I IFN in response to viral infection (Basagoudanavar et al., 2011; Wang et al., 2010 Wang et al., , 2007b .
TextSentencer_T172 31372-31520 Sentence denotes In this study, instead of observing a compromised production of type I IFN, we found an even higher production of type I IFN in CARMA3 KO MEF cells.
TextSentencer_T173 31521-31704 Sentence denotes Therefore, the contribution of the enhanced IRF3 activation in the absence of CARMA3 not only counteracted the defect of NF-kB but also resulted in greater overall production of IFNb.
TextSentencer_T174 31705-31962 Sentence denotes This indicates the importance of CARMA3 for inhibiting the expression of type I IFN and antiviral responses, suggesting that IRF3 activation plays a more dominant role in the expression of type I IFN than NF-kB activation in response to RNA virus infection.
TextSentencer_T175 31963-32057 Sentence denotes In this study, we found that CARMA3 functions downstream of MAVS and upstream of TBK1 or IKKε.
TextSentencer_T176 32058-32210 Sentence denotes As a scaffold protein, CARMA3 interacts with MAVS and prevents the formation of high-molecular weight MAVS aggregates, thereby blocking IRF3 activation.
TextSentencer_T177 32211-32441 Sentence denotes It is interesting that CARMA3 is gradually turned over following VSV infection, which may serve as a mechanism to turn off NF-kB activation, and, meanwhile, it releases MAVS to form functional aggregates to induce IRF3 activation.
TextSentencer_T178 32442-32686 Sentence denotes Further studies are necessary to determine the molecular mechanism as to how CARMA3 is targeted for K48 ubiquitination and degradation, and targeting CARMA3 for degradation may help to reduce inflammation while enhancing the antiviral response.
TextSentencer_T179 32687-32843 Sentence denotes Therefore, understanding this mechanism may provide molecular insights for designing therapeutic agents for suppressing viral infectioninduced inflammation.
TextSentencer_T180 32844-33086 Sentence denotes Antibodies against Flag (sc-807), IkBa (sc-371), IKKa (sc-7218), HA (sc-7392), His (sc-803), BCL10 (sc-5611), Myc (sc-40), IRF3 (sc-9028), NEMO (sc-8330), b-actin (sc-8432), and a-tubulin (sc8035) were purchased from Santa Cruz Biotechnology.
TextSentencer_T181 33087-33238 Sentence denotes Antibodies against p-IkBa (9246), p-IKKa/b (2681), Caspase 3 (9664), p-IRF3 (4947), p-TBK1 (5483), and TBK1 (3013) were from Cell Signaling Technology.
TextSentencer_T182 33239-33390 Sentence denotes The rabbit polyclonal antibody against Carma3 was homemade against the peptide VRGRILQEQARLVWVEC, matching to the C terminus of human and mouse CARMA3.
TextSentencer_T183 33391-33451 Sentence denotes The anti-MAVS antibody was kindly provided by Dr. Zhijian J.
TextSentencer_T184 33452-33475 Sentence denotes Chen (UT Southwestern).
TextSentencer_T185 33476-33563 Sentence denotes Oligonucleotide probes for NF-kB (E3291) and OCT-1 (E3241) were purchased from Promega.
TextSentencer_T186 33564-33747 Sentence denotes TRIzol (15596-026) and Superscript III First-Strand Synthesis system (18080051) were obtained from Invitrogen and DNase I kits (10104159001) were purchased from Roche Applied Science.
TextSentencer_T187 33748-33822 Sentence denotes Two times SYBR Green PCR Master Mix was purchased from Applied Biosystems.
TextSentencer_T188 33823-33895 Sentence denotes Influenza A/PR/8/34(H1N1) was purchased from Charles River Laboratories.
TextSentencer_T189 33896-33937 Sentence denotes NF-kBi and CHX were purchased from Sigma.
TextSentencer_T190 33938-34113 Sentence denotes Cells were grown in DMEM (HEK293T, BHK, and MEF) containing 10% fetal bovine serum (FBS) at 37 C and 5% CO 2 except for MEF cells, which were incubated at 37 C and 8.5% CO 2 .
TextSentencer_T191 34114-34310 Sentence denotes BEAS-2B cells were purchased from ATCC, cultured with LHC-8 medium from Thermo Fisher in pre-coated culture dishes with BSA (Fisher Scientific), Fibronectin, and Collagen I bovine (Thermo Fisher).
TextSentencer_T192 34311-34407 Sentence denotes Expression Plasmids FLAG-tagged human CARMA3 has been described previously (Sun and Lin, 2008) .
TextSentencer_T193 34408-34461 Sentence denotes HA-tagged mouse CARMA3 was cloned into pcDNA3 vector.
TextSentencer_T194 34462-34536 Sentence denotes RIG-I, MAVS, TBK1, IKKε, and IkBa SR plasmids were purchased from Addgene.
TextSentencer_T195 34537-34651 Sentence denotes FLAG-or Myc-tagged BCL10 has been described previously ; shRNA against CARMA3 and BCL10 were purchased from Sigma.
TextSentencer_T196 34652-34748 Sentence denotes The real-time qPCR and ELISA assay were performed as recommended by the manufacturer's protocol.
TextSentencer_T197 34749-34832 Sentence denotes The luciferase assay was performed as described previously (Blonska et al., 2005) .
TextSentencer_T198 34833-35133 Sentence denotes Briefly, 293T cells were seeded in triplicates in 12-well plates and transfected with 60 ng NF-kB-dependent luciferase (firefly) reporter plasmid and 6 ng EF1a promoter-dependent Renilla luciferase reporter together with 1.5 mg expression vectors for Carma3, TMEM43 WT or mutants, or vector controls.
TextSentencer_T199 35134-35207 Sentence denotes The transfected cells were cultured in DMEM containing 10% FBS for 16 hr.
TextSentencer_T200 35208-35243 Sentence denotes The cells were harvested and lysed.
TextSentencer_T201 35244-35333 Sentence denotes Luciferase activities in the cell lysates were measured by dual-luciferase kit (Promega).
TextSentencer_T202 35334-35415 Sentence denotes These experiments were performed as described previously (Blonska et al., 2005) .
TextSentencer_T203 35416-35539 Sentence denotes Briefly, 1-5 3 10 6 cells were seeded, starved for 16 hr, and stimulated with various stimulators for the appropriate time.
TextSentencer_T204 35540-35743 Sentence denotes The cells were then lysed in a buffer containing 50 mM HEPES (pH 7.4), 250 mM NaCl, 1% Nonidet P-40, 1 mM EDTA, 1 mM Na 3 VO 4 , 1 mM NaF, 1 mM PMSF, and a protease inhibitor mixture (Roche Diagnostics).
TextSentencer_T205 35744-35864 Sentence denotes The cell lysates were subjected to SDS-PAGE and western blot or immunoprecipitated with appropriate specific antibodies.
TextSentencer_T206 35865-35963 Sentence denotes The immunoprecipitates were washed with lysis buffer four times eluted with 23 SDS loading buffer.
TextSentencer_T207 35964-36062 Sentence denotes The samples were boiled and separated on 10% SDS-PAGE and transferred to nitrocellulose membranes.
TextSentencer_T208 36063-36306 Sentence denotes Immunoblots were incubated with specific primary antibodies followed by horseradish peroxidase-conjugated secondary antibodies, and they were developed by the enhanced chemiluminescence method according to the manufacturer's protocol (Pierce).
TextSentencer_T209 36307-36388 Sentence denotes These experiments were performed as described previously (Blonska et al., 2005) .
TextSentencer_T210 36389-36548 Sentence denotes Briefly, 1-5 3 10 6 cells were seeded, starved for 16 hr, and stimulated with various stimulators for the appropriate time, and nuclear extracts were prepared.
TextSentencer_T211 36549-36647 Sentence denotes Nuclear extracts (5-10 mg) were incubated with 32 P-labeled probes at room temperature for 15 min.
TextSentencer_T212 36648-36784 Sentence denotes The samples were separated on a native Tris-Borate-EDTA polyacrylamide gel, which was dried at 80 C for 1 hr, and exposed to X-ray film.
TextSentencer_T213 36785-36900 Sentence denotes Lentivirus Infection for shRNA Knockdown Lentiviruses were packaged as described previously (Jiang et al., 2011b) .
TextSentencer_T214 36901-37034 Sentence denotes Briefly, HEK293T were co-transfected with shRNA and packaging vectors encoding VSV-G and DVPR using the calcium precipitation method.
TextSentencer_T215 37035-37128 Sentence denotes At 48 hr post-transfection, the supernatant was collected and applied to infect target cells.
TextSentencer_T216 37129-37225 Sentence denotes The infected cells were selected by puromycin for 3-4 days before the conduction of experiments.
TextSentencer_T217 37226-37303 Sentence denotes These experiments were performed as described previously (Hou et al., 2011) .
TextSentencer_T218 37304-37402 Sentence denotes Briefly, cells were washed with ice-cold PBS twice and harvested by spinning at 600 3 g for 5 min.
TextSentencer_T219 37403-37577 Sentence denotes The cells were swollen in hypotonic buffer (10 mM Tris-Cl [pH 7.5], 10 mM KCl, 0.5 mM EGTA, 1.5 mM MgCl 2 , 1 mM PMSF, and 13 EDTA-free protease cocktail) for 2.5 min at 4 C.
TextSentencer_T220 37578-37665 Sentence denotes The swollen cells were homogenized for 40 strokes at 4 C and spun at 600 3 g for 5 min.
TextSentencer_T221 37666-37731 Sentence denotes The supernatant was transferred to a new tube and spun once more.
TextSentencer_T222 37732-37794 Sentence denotes The resulting supernatant was spun to pellet the mitochondria.
TextSentencer_T223 37795-38038 Sentence denotes The mitochondria pellet was resuspended in mitochondria-resuspending buffer (MRB) (20 mM HEPES-KOH [pH 7.4], 0.5 mM EGTA, 1 mM PMSF, and 13 EDTA-free protease cocktail) containing 0.8 M sucrose and pelleted by spinning at 7,000 3 g for 10 min.
TextSentencer_T224 38039-38084 Sentence denotes The pellet was resuspended and spun as above.
TextSentencer_T225 38085-38216 Sentence denotes The resulting pellet was resuspended, spun at 10,000 3 g for 10 min, and lysed in MRB buffer containing 2% CHAPs on ice for 15 min.
TextSentencer_T226 38217-38366 Sentence denotes The mitochondria lysates were mixed with 23 loading dye (13 TBE, 10% glycerol, 4% SDS, and 0.005% bromophenol blue) containing no reduction reagents.
TextSentencer_T227 38367-38470 Sentence denotes SDD-AGE was performed as described previously with minor modifications (Halfmann and Lindquist, 2008) .
TextSentencer_T228 38471-38550 Sentence denotes Briefly, 1.5% agarose gel containing 0.1% SDS was prepared in 0.253 TAE buffer.
TextSentencer_T229 38551-38621 Sentence denotes The mitochondria lysates in 13 loading dye were loaded into the wells.
TextSentencer_T230 38622-38906 Sentence denotes After electrophoresis in the running buffer (0.253 TAE and 0.1% SDS) for 7 hr with a constant voltage of 30 V at room temperature, the gel was rinsed with water and transferred to Immobilon membrane (Millipore) by butterfly transfer in 13 TBS (50 mM Tris.Cl [pH 7.5] and 150 mM NaCl).
TextSentencer_T231 38907-38978 Sentence denotes The membrane was then blotted with specific antibody as immunoblotting.
TextSentencer_T232 38979-39176 Sentence denotes VSV and Influenza Virus Mice Model BALB/c mice (6-8 weeks old, n R 5 per group) were intranasally inoculated with 20 ml H1N1 influenza virus (PFUs = 600 per mice) in PBS under isofluorane sedation.
TextSentencer_T233 39177-39241 Sentence denotes Survival and body weight changes were recorded daily for 14 dpi.
TextSentencer_T234 39242-39390 Sentence denotes Animals that showed signs of severe disease and weight loss >25% of their initial body weight were considered moribund and were humanely sacrificed.
TextSentencer_T235 39391-39421 Sentence denotes Lungs were harvested at 4 dpi.
TextSentencer_T236 39422-39624 Sentence denotes All animal experiments and procedures were conducted under the protocol and were approved by the Institutional Animal Care and Use Committee (IACUC) at the University of Texas MD Anderson Cancer Center.
TextSentencer_T237 39625-39825 Sentence denotes For the VSV mouse model, 6-to 8-week-old BALB/c mice (n R 5 per group) were intranasally inoculated with 20 ml VSV (plaque-forming units [PFUs] = 1 3 10 7 per mouse) in PBS under isofluorane sedation.
TextSentencer_T238 39826-39910 Sentence denotes Mouse serum tissues (lung, brain, and spleen) were harvested 2 days after infection.
TextSentencer_T239 39911-39966 Sentence denotes The VSV plaque assay protocol was previously described.
TextSentencer_T240 39967-40015 Sentence denotes Briefly, cells were infected with VSV (MOI = 3).
TextSentencer_T241 40016-40126 Sentence denotes At 1 hr post-infection, the cells were washed twice with serum-free DMEM and replenished with complete medium.
TextSentencer_T242 40127-40242 Sentence denotes The supernatant was collected at different time points, diluted with serum-free DMEM, and used to infect BHK cells.
TextSentencer_T243 40243-40403 Sentence denotes At 1 hr post-infection, medium from the BHK cells was removed and replaced with complete medium containing 0.5% methylcellulose (Sigma-Aldrich) for 24 to 48 hr.
TextSentencer_T244 40404-40478 Sentence denotes BHK cells were fixed in fixation solution and stained with crystal violet.
TextSentencer_T245 40479-40549 Sentence denotes Plaques were counted and titers were calculated as PFU per milliliter.
TextSentencer_T246 40550-40642 Sentence denotes Triplicate experiments were performed, and the averages of the virus titers were calculated.
TextSentencer_T247 40643-40766 Sentence denotes MDCKs were passed in high-glucose DMEM (10% FBS and 1% Pen-Strep) in a T175 (a 1:12 pass dilution every other day) at 37 C.
TextSentencer_T248 40767-40878 Sentence denotes Cells (2 3 10 4 ) were seeded in 96-well plates at the night before assay with 150 ml DMEM (FBS and Pen-Strep).
TextSentencer_T249 40879-41084 Sentence denotes The morning of the next day, influenza samples were thawed on ice and then homogenized, transfering a 600-ml sample into the first tube of the dilution series and serially diluting 184 ml across the tubes.
TextSentencer_T250 41085-41190 Sentence denotes Once samples were diluted across tubes, they were kept on ice and 100 ml sample was added to empty wells.
TextSentencer_T251 41191-41249 Sentence denotes Samples were incubated at 37 C for 1 hr and aspirated off.
TextSentencer_T252 41250-41299 Sentence denotes Then 150 ml DMEM with typsin (1 mg/ml) was added.
TextSentencer_T253 41300-41342 Sentence denotes Samples were incubated at 37 C for 3 days.
TextSentencer_T254 41343-41500 Sentence denotes After the 3 days, the media were aspirated off and 200 ml Crystal violet working stock (40 ml 1% Crystal Violet, 80 ml Methanol, and 300 ml H 2 O) was added.
TextSentencer_T255 41501-41532 Sentence denotes The working stock sat for 1 hr.
TextSentencer_T256 41533-41595 Sentence denotes Crystal violet was removed and samples were rinsed with water.
TextSentencer_T257 41596-41655 Sentence denotes The statistical analysis was performed by Student's t test.