SeeDev-binary@ldeleger:SeeDev-binary-19719479-2 JSONTXT

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bionlp-ost-19-SeeDev-bin-dev

Below, discontinuous spans are shown in the bag model. You can change it to the chain model.

Id Subject Object Predicate Lexical cue
T1 10-55 Pathway denotes biochemical pathways producing storage lipids
T2 59-74 Genotype denotes oilseed species
T3 80-94 Genotype denotes Brassica napus
T4 98-118 Genotype denotes Arabidopsis thaliana
T5 193-220 Regulatory_Network denotes regulation of oil synthesis
T6 207-220 Pathway denotes oil synthesis
T7 318-334 Tissue denotes developing seeds
T8 342-349 Tissue denotes embryos
T9 376-413 Pathway denotes biosynthetic pathways for fatty acids
T10-1 376-402,418-424 Pathway denotes biosynthetic pathways for lipids
T11 548-559 Genotype denotes A. thaliana
T12 693-716 Pathway denotes fatty-acid biosynthesis
T13 721-737 Pathway denotes lipid metabolism
T14 745-760 Development_Phase denotes seed maturation
T15 745-749 Tissue denotes seed
T16-1 805-817,830-849 Pathway denotes biosynthesis of triacylglycerols
T17 822-849 Pathway denotes storage of triacylglycerols
T18 950-970 Pathway denotes fatty acid synthesis
T19 1030-1059 Development_Phase denotes onset of the maturation phase
T20 1120-1128 Protein_Family denotes oleosins
T21 1197-1275 RNA denotes mRNAs of several genes encoding enzymes of the fatty acid biosynthetic pathway
T22 1244-1275 Pathway denotes fatty acid biosynthetic pathway
T23 1528-1537 Protein denotes WRINKLED1
T24 1539-1543 Protein denotes WRI1
T25 1640-1644 Protein denotes WRI1
T26 1667-1683 Protein denotes LEAFY COTYLEDON2
T27 1685-1689 Protein denotes LEC2
T28 1756-1771 Development_Phase denotes seed maturation
T29 1756-1760 Tissue denotes seed
T30 1780-1801 Pathway denotes fatty acid metabolism
T31 1844-1848 Protein denotes WRI1
T32 1867-1882 Pathway denotes late glycolysis
T33 1888-1908 Pathway denotes fatty acid synthesis
T34-1 1926-1932,1949-1970 Pathway denotes biotin biosynthetic pathways
T35 1937-1970 Pathway denotes lipoic acid biosynthetic pathways
T36 2014-2018 Protein denotes WRI1
T37-1 2038-2083,2095-2103 Protein_Family denotes APETALA2/ethylene-responsive element binding proteins
T38 2038-2046 Protein denotes APETALA2
T39-1 2047-2082,2095-2103 Protein_Family denotes ethylene-responsive element binding proteins
T40 2084-2093 Protein_Family denotes AP2/EREBP
T41 2084-2087 Protein denotes AP2
T42 2088-2093 Protein_Family denotes EREBP
T43 2157-2168 Genotype denotes A. thaliana
T44 2241-2251 Protein_Domain denotes AP2 domain
T45 2241-2244 Protein denotes AP2
T46 2418-2427 Protein_Family denotes AP2/EREBP
T47 2418-2421 Protein denotes AP2
T48 2422-2427 Protein_Family denotes EREBP
T49 2469-2475 Genotype denotes plants
T50 2515-2525 Protein_Domain denotes AP2 domain
T51 2515-2518 Protein denotes AP2
T52 2550-2563 Genotype denotes cyanobacteria
T53 2565-2573 Genotype denotes ciliates
T54 2578-2585 Genotype denotes viruses
T55 2747-2763 Protein_Domain denotes AP2-like domains
T56 2747-2750 Protein denotes AP2
T57 2814-2823 Protein_Family denotes AP2/EREBP
T58 2814-2817 Protein denotes AP2
T59 2818-2823 Protein_Family denotes EREBP
T60 2834-2845 Genotype denotes A. thaliana
T61 2871-2880 Protein_Family denotes AP2/EREBP
T62 2871-2874 Protein denotes AP2
T63 2875-2880 Protein_Family denotes EREBP
T64 2944-2955 Protein_Domain denotes AP2 domains
T65 2944-2947 Protein denotes AP2
T66 2995-3000 Protein_Family denotes EREBP
T67 3042-3052 Protein_Domain denotes AP2 domain
T68 3042-3045 Protein denotes AP2
T69 3095-3098 Protein_Family denotes ERF
T70 3116-3120 Protein_Family denotes DREB
T71 3163-3166 Protein_Family denotes RAV
T72 3200-3210 Protein_Domain denotes AP2 domain
T73 3200-3203 Protein denotes AP2
T74 3248-3262 Protein_Domain denotes B3-like domain
T75 3269-3279 Protein_Family denotes AP2 family
T76 3269-3272 Protein denotes AP2
T77 3308-3319 Protein_Domain denotes AP2 domains
T78 3308-3311 Protein denotes AP2
T79 3374-3387 Protein_Family denotes APETALA2-like
T80-1 3392-3404,3410-3415 Protein_Family denotes AINTEGUMENTA -like
T81-1 3406-3409,3410-3415 Protein_Family denotes ANT -like
T82 3459-3468 Protein_Family denotes WRI1-like
T83 3459-3463 Protein denotes WRI1
T84 3488-3492 Protein denotes WRI1
T85 3494-3503 Gene denotes At2g41710
T86 3505-3514 Gene denotes At1g16060
T87 3519-3528 Gene denotes At1g79700
T88 3587-3597 Protein_Family denotes AP2 family
T89 3587-3590 Protein denotes AP2
T90 3645-3653 Protein_Family denotes ANT-like
T91 3759-3769 Protein_Domain denotes AP2 repeat
T92 3759-3762 Protein denotes AP2
T93 3787-3790 Protein_Family denotes ERF
T94 3809-3835 Box denotes ethylene response elements
T95 3837-3840 Box denotes ERE
T96 3845-3854 Box denotes GCC boxes
T97 3896-3908 Box denotes TAAGAGGCCGCC
T98 3923-3929 Box denotes GCCGCC
T99 4069-4079 Protein_Domain denotes AP2 domain
T100 4069-4072 Protein denotes AP2
T101 4083-4089 Protein denotes AtERF1
T102 4103-4110 Box denotes GCC box
T103 4169-4183 Protein_Family denotes DREB subfamily
T104 4192-4221 Box denotes dehydration response elements
T105 4223-4227 Box denotes DREs
T106 4268-4273 Box denotes CCGAC
T107 4307-4317 Protein_Domain denotes AP2 repeat
T108 4307-4310 Protein denotes AP2
T109 4325-4329 Protein denotes RAV1
T110 4379-4384 Box denotes CAACA
T111 4404-4413 Protein_Domain denotes B3 domain
T112 4425-4431 Box denotes CACCTG
T113 4526-4536 Protein_Family denotes AP2 family
T114 4526-4529 Protein denotes AP2
T115 4594-4606 Protein denotes AINTEGUMENTA
T116 4608-4611 Protein denotes ANT
T117 4632-4640 Environmental_Factor denotes in vitro
T118 4644-4682 Box denotes 5′-gCAC(A/G)N(A/T)TcCC(a/g)ANG(c/t)-3′
T119 4799-4809 Protein_Domain denotes AP2 repeat
T120 4799-4802 Protein denotes AP2
T121 4816-4826 Protein_Domain denotes AP2 repeat
T122 4816-4819 Protein denotes AP2
T123 4830-4833 Protein denotes ANT
T124 4913-4916 Protein denotes ANT
T125 5008-5018 Protein_Domain denotes AP2 domain
T126 5008-5011 Protein denotes AP2
T127 5122-5130 Protein_Family denotes AP2-like
T128 5122-5125 Protein denotes AP2
T129 5135-5144 Protein_Family denotes WRI1-like
T130 5135-5139 Protein denotes WRI1
T131 5239-5249 Protein_Family denotes AP2 family
T132 5239-5242 Protein denotes AP2
T133 5323-5327 Protein denotes WRI1
T134 5345-5349 Tissue denotes seed
T135-1 5404-5414,5430-5448 Gene_Family denotes glycolytic biosynthetic genes
T136 5419-5448 Gene_Family denotes fatty acid biosynthetic genes
T137 5547-5551 Protein denotes WRI1
T138 5572-5581 Genotype denotes in planta
T139 5602-5607 Gene denotes BCCP2
T140-1 5602-5607,5619-5628 Promoter denotes BCCP2 promoters
T141 5612-5628 Promoter denotes PKp-β1 promoters
T142 5612-5618 Gene denotes PKp-β1
T143 5685-5701 Environmental_Factor denotes yeast one-hybrid
T144 5724-5728 Protein denotes WRI1
T145 5758-5772 Promoter denotes BCCP2 promoter
T146 5758-5763 Gene denotes BCCP2
T147 5810-5814 Protein denotes WRI1
T148 5846-5860 Gene_Family denotes lipogenic gene
T149 5875-5880 Tissue denotes seeds
T150 5952-5981 Development_Phase denotes onset of the maturation phase
T151 6013-6019 Gene denotes PKp-β1
T152-1 6013-6019,6030-6039 Promoter denotes PKp-β1 promoters
T153 6024-6039 Promoter denotes BCCP2 promoters
T154 6024-6029 Gene denotes BCCP2
T155 6124-6128 Protein denotes WRI1
T156 6246-6250 Protein denotes WRI1
T157 6259-6273 Promoter denotes BCCP2 promoter
T158 6259-6264 Gene denotes BCCP2
T159 6280-6288 Environmental_Factor denotes in vitro
T160 6296-6301 Genotype denotes yeast
T161 6343-6352 Genotype denotes in planta
T162-1 6474-6484,6500-6521 Pathway denotes glycolytic biosynthetic pathways
T163 6489-6521 Pathway denotes fatty acid biosynthetic pathways
T164 6525-6536 Genotype denotes A. thaliana
T165 6637-6653 Pathway denotes oil accumulation
T166 6657-6662 Tissue denotes seeds
E1 3896-3908 Composes_Primary_Structure denotes TAAGAGGCCGCC
E2 3042-3052 Is_Protein_Domain_Of denotes AP2 domain
E3 3248-3262 Is_Protein_Domain_Of denotes B3-like domain
E4 2418-2427 Exists_In_Genotype denotes AP2/EREBP
E5 4307-4317 Is_Protein_Domain_Of denotes AP2 repeat
E6 2515-2525 Exists_In_Genotype denotes AP2 domain
E7 3200-3210 Is_Protein_Domain_Of denotes AP2 domain
E8 3308-3319 Is_Protein_Domain_Of denotes AP2 domains
E9 2747-2763 Is_Protein_Domain_Of denotes AP2-like domains
E10 2515-2525 Exists_In_Genotype denotes AP2 domain
E11 4816-4826 Is_Protein_Domain_Of denotes AP2 repeat
E12 4404-4413 Is_Protein_Domain_Of denotes B3 domain
E13 4268-4273 Composes_Primary_Structure denotes CCGAC
E14 2241-2251 Is_Protein_Domain_Of denotes AP2 domain
E15 3923-3929 Composes_Primary_Structure denotes GCCGCC
E16 4069-4079 Is_Protein_Domain_Of denotes AP2 domain
E17 2515-2525 Exists_In_Genotype denotes AP2 domain
E18 5323-5327 Regulates_Expression denotes WRI1
E19 5547-5551 Regulates_Expression denotes WRI1
E20 5810-5814 Regulates_Expression denotes WRI1
E21 5547-5551 Regulates_Expression denotes WRI1
E22 5323-5327 Regulates_Expression denotes WRI1
E23 1844-1848 Regulates_Process denotes WRI1
E24 1844-1848 Regulates_Process denotes WRI1
E25 1844-1848 Regulates_Process denotes WRI1
E26 1844-1848 Regulates_Process denotes WRI1
E27 1640-1644 Regulates_Process denotes WRI1
E28 1685-1689 Regulates_Development_Phase denotes LEC2
E29 4608-4611 Binds_To denotes ANT
E30 4307-4317 Binds_To denotes AP2 repeat
E31 5724-5728 Binds_To denotes WRI1
E32 4404-4413 Binds_To denotes B3 domain
E33 4069-4079 Binds_To denotes AP2 domain
E34 3787-3790 Binds_To denotes ERF
E35 4169-4183 Binds_To denotes DREB subfamily
E36 3459-3468 Is_Member_Of_Family denotes WRI1-like
E37 3374-3387 Is_Member_Of_Family denotes APETALA2-like
E38 3459-3468 Is_Member_Of_Family denotes WRI1-like
E39 3116-3120 Is_Member_Of_Family denotes DREB
E40 2014-2018 Is_Member_Of_Family denotes WRI1
E41 3488-3492 Is_Member_Of_Family denotes WRI1
E42-1 3406-3409,3410-3415 Is_Member_Of_Family denotes ANT -like
E43 2014-2018 Is_Member_Of_Family denotes WRI1
E44 3095-3098 Is_Member_Of_Family denotes ERF
E45-1 2038-2083,2095-2103 Has_Sequence_Identical_To denotes APETALA2/ethylene-responsive element binding proteins
E46-1 3406-3409,3410-3415 Has_Sequence_Identical_To denotes ANT -like
E47 3809-3835 Has_Sequence_Identical_To denotes ethylene response elements
E48 1528-1537 Has_Sequence_Identical_To denotes WRINKLED1
E49 3837-3840 Has_Sequence_Identical_To denotes ERE
E50 4223-4227 Has_Sequence_Identical_To denotes DREs
E51 2084-2087 Has_Sequence_Identical_To denotes AP2
E52 4608-4611 Has_Sequence_Identical_To denotes ANT
E53 1667-1683 Has_Sequence_Identical_To denotes LEAFY COTYLEDON2
E54 2088-2093 Has_Sequence_Identical_To denotes EREBP
E55 1685-1689 Regulates_Accumulation denotes LEC2
E56 3505-3514 Transcribes_Or_Translates_To denotes At1g16060
E57 3519-3528 Transcribes_Or_Translates_To denotes At1g79700
E58 3494-3503 Transcribes_Or_Translates_To denotes At2g41710
E59 2814-2823 Exists_In_Genotype denotes AP2/EREBP
E60 2747-2763 Exists_In_Genotype denotes AP2-like domains
E61 4632-4640 Interacts_With denotes in vitro
E62 4632-4640 Interacts_With denotes in vitro
E63 2014-2018 Exists_In_Genotype denotes WRI1
E64 2084-2093 Exists_In_Genotype denotes AP2/EREBP
E65-1 2038-2083,2095-2103 Exists_In_Genotype denotes APETALA2/ethylene-responsive element binding proteins
E66 5547-5551 Exists_In_Genotype denotes WRI1
E67 5810-5814 Is_Localized_In denotes WRI1
E68 5810-5814 Exists_At_Stage denotes WRI1
E69 5572-5581 Regulates_Expression denotes in planta
E70 5875-5880 Regulates_Expression denotes seeds
E71 5952-5981 Regulates_Expression denotes onset of the maturation phase
E72 5572-5581 Regulates_Expression denotes in planta
R1 E1 T97 DNA_Part TAAGAGGCCGCC,TAAGAGGCCGCC
R2 E1 T96 DNA TAAGAGGCCGCC,GCC boxes
R3 E2 T67 Domain AP2 domain,AP2 domain
R4 E2 T66 Product AP2 domain,EREBP
R5 E3 T74 Domain B3-like domain,B3-like domain
R6 E3 T71 Product B3-like domain,RAV
R7 E4 T46 Molecule AP2/EREBP,AP2/EREBP
R8 E4 T49 Genotype AP2/EREBP,plants
R9 E5 T107 Domain AP2 repeat,AP2 repeat
R10 E5 T109 Product AP2 repeat,RAV1
R11 E6 T50 Molecule AP2 domain,AP2 domain
R12 E6 T53 Genotype AP2 domain,ciliates
R13 E7 T72 Domain AP2 domain,AP2 domain
R14 E7 T71 Product AP2 domain,RAV
R15 E8 T77 Domain AP2 domains,AP2 domains
R16 E8 T75 Product AP2 domains,AP2 family
R17 E9 T55 Domain AP2-like domains,AP2-like domains
R18 E9 T57 Product AP2-like domains,AP2/EREBP
R19 E10 T50 Molecule AP2 domain,AP2 domain
R20 E10 T52 Genotype AP2 domain,cyanobacteria
R21 E11 T121 Domain AP2 repeat,AP2 repeat
R22 E11 T123 Product AP2 repeat,ANT
R23 E12 T111 Domain B3 domain,B3 domain
R24 E12 T109 Product B3 domain,RAV1
R25 E13 T106 DNA_Part CCGAC,CCGAC
R26 E13 T104 DNA CCGAC,dehydration response elements
R27 E14 T44 Domain AP2 domain,AP2 domain
R28 E14 T40 Product AP2 domain,AP2/EREBP
R29 E15 T98 DNA_Part GCCGCC,GCCGCC
R30 E15 T97 DNA GCCGCC,TAAGAGGCCGCC
R31 E16 T99 Domain AP2 domain,AP2 domain
R32 E16 T101 Product AP2 domain,AtERF1
R33 E17 T50 Molecule AP2 domain,AP2 domain
R34 E17 T54 Genotype AP2 domain,viruses
R35 E18 T133 Agent WRI1,WRI1
R36 E18 T135-0 DNA WRI1,
R37 E19 T137 Agent WRI1,WRI1
R38 E19 T141 DNA WRI1,PKp-β1 promoters
R39 E20 T147 Agent WRI1,WRI1
R40 E20 T148 DNA WRI1,lipogenic gene
R41 E21 T137 Agent WRI1,WRI1
R42 E21 T140-0 DNA WRI1,
R43 E22 T133 Agent WRI1,WRI1
R44 E22 T136 DNA WRI1,fatty acid biosynthetic genes
R45 E23 T31 Agent WRI1,WRI1
R46 E23 T35 Process WRI1,lipoic acid biosynthetic pathways
R47 E24 T31 Agent WRI1,WRI1
R48 E24 T32 Process WRI1,late glycolysis
R49 E25 T31 Agent WRI1,WRI1
R50 E25 T33 Process WRI1,fatty acid synthesis
R51 E26 T31 Agent WRI1,WRI1
R52 E26 T34-0 Process WRI1,
R53 E27 T25 Agent WRI1,WRI1
R54 E27 T30 Process WRI1,fatty acid metabolism
R55 E28 T27 Agent LEC2,LEC2
R56 E28 T28 Development LEC2,seed maturation
R57 E29 T116 Functional_Molecule ANT,ANT
R58 E29 T118 Molecule ANT,5′-gCAC(A/G)N(A/T)TcCC(a/g)ANG(c/t)-3′
R59 E30 T107 Functional_Molecule AP2 repeat,AP2 repeat
R60 E30 T110 Molecule AP2 repeat,CAACA
R61 E31 T144 Functional_Molecule WRI1,WRI1
R62 E31 T145 Molecule WRI1,BCCP2 promoter
R63 E32 T111 Functional_Molecule B3 domain,B3 domain
R64 E32 T112 Molecule B3 domain,CACCTG
R65 E33 T99 Functional_Molecule AP2 domain,AP2 domain
R66 E33 T102 Molecule AP2 domain,GCC box
R67 E34 T93 Functional_Molecule ERF,ERF
R68 E34 T94 Molecule ERF,ethylene response elements
R69 E35 T103 Functional_Molecule DREB subfamily,DREB subfamily
R70 E35 T104 Molecule DREB subfamily,dehydration response elements
R71 E36 T82 Element WRI1-like,WRI1-like
R72 E36 T88 Family WRI1-like,AP2 family
R73 E37 T79 Element APETALA2-like,APETALA2-like
R74 E37 T75 Family APETALA2-like,AP2 family
R75 E38 T82 Element WRI1-like,WRI1-like
R76 E38 T90 Family WRI1-like,ANT-like
R77 E39 T70 Element DREB,DREB
R78 E39 T66 Family DREB,EREBP
R79 E40 T36 Element WRI1,WRI1
R80 E40 T40 Family WRI1,AP2/EREBP
R81 E41 T84 Element WRI1,WRI1
R82 E41 T82 Family WRI1,WRI1-like
R83 E42-0 T81-0 Element ,
R84 E42-0 T75 Family ,AP2 family
R85 E43 T36 Element WRI1,WRI1
R86 E43 T37-0 Family WRI1,
R87 E44 T69 Element ERF,ERF
R88 E44 T66 Family ERF,EREBP
R89 E45-0 T37-0 Element1 ,
R90 E45-0 T40 Element2 ,AP2/EREBP
R91 E46-0 T81-0 Element1 ,
R92 E46-0 T80-0 Element2 ,
R93 E47 T94 Element1 ethylene response elements,ethylene response elements
R94 E47 T96 Element2 ethylene response elements,GCC boxes
R95 E48 T23 Element1 WRINKLED1,WRINKLED1
R96 E48 T24 Element2 WRINKLED1,WRI1
R97 E49 T95 Element1 ERE,ERE
R98 E49 T94 Element2 ERE,ethylene response elements
R99 E50 T105 Element1 DREs,DREs
R100 E50 T104 Element2 DREs,dehydration response elements
R101 E51 T41 Element1 AP2,AP2
R102 E51 T38 Element2 AP2,APETALA2
R103 E52 T116 Element1 ANT,ANT
R104 E52 T115 Element2 ANT,AINTEGUMENTA
R105 E53 T26 Element1 LEAFY COTYLEDON2,LEAFY COTYLEDON2
R106 E53 T27 Element2 LEAFY COTYLEDON2,LEC2
R107 E54 T42 Element1 EREBP,EREBP
R108 E54 T39-0 Element2 EREBP,
R109 E55 T27 Agent LEC2,LEC2
R110 E55 T25 Functional_Molecule LEC2,WRI1
R111 E56 T86 Source At1g16060,At1g16060
R112 E56 T82 Product At1g16060,WRI1-like
R113 E57 T87 Source At1g79700,At1g79700
R114 E57 T82 Product At1g79700,WRI1-like
R115 E58 T85 Source At2g41710,At2g41710
R116 E58 T82 Product At2g41710,WRI1-like
R117 E59 T57 Molecule AP2/EREBP,AP2/EREBP
R118 E59 T60 Genotype AP2/EREBP,A. thaliana
R119 E60 T55 Molecule AP2-like domains,AP2-like domains
R120 E60 T60 Genotype AP2-like domains,A. thaliana
R121 E61 T117 Agent in vitro,in vitro
R122 E61 T116 Target in vitro,ANT
R123 E62 T117 Agent in vitro,in vitro
R124 E62 T118 Target in vitro,5′-gCAC(A/G)N(A/T)TcCC(a/g)ANG(c/t)-3′
R125 E63 T36 Molecule WRI1,WRI1
R126 E63 T43 Genotype WRI1,A. thaliana
R127 E64 T40 Molecule AP2/EREBP,AP2/EREBP
R128 E64 T43 Genotype AP2/EREBP,A. thaliana
R129 E65-0 T37-0 Molecule ,
R130 E65-0 T43 Genotype ,A. thaliana
R131 E66 T137 Molecule WRI1,WRI1
R132 E66 T138 Genotype WRI1,in planta
R133 E67 T147 Functional_Molecule WRI1,WRI1
R134 E67 T149 Target_Tissue WRI1,seeds
R135 E68 T147 Functional_Molecule WRI1,WRI1
R136 E68 T150 Development WRI1,onset of the maturation phase
R137 E69 T138 Agent in planta,in planta
R138 E69 T141 DNA in planta,PKp-β1 promoters
R139 E70 T149 Agent seeds,seeds
R140 E70 T148 DNA seeds,lipogenic gene
R141 E71 T150 Agent onset of the maturation phase,onset of the maturation phase
R142 E71 T148 DNA onset of the maturation phase,lipogenic gene
R143 E72 T138 Agent in planta,in planta
R144 E72 T140-0 DNA in planta,