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PubMed:7747440 JSONTXT

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jnlpba-st-training

Id Subject Object Predicate Lexical cue
T1 78-94 cell_type denotes human thymocytes
T2 129-135 protein denotes BZLF-1
T3 154-157 protein denotes RAZ
T4 203-210 cell_type denotes B cells
T5 215-231 cell_type denotes epithelial cells
T6 295-305 cell_type denotes thymocytes
T7 320-330 cell_type denotes thymocytes
T8 368-385 DNA denotes linear EBV genome
T9 435-445 DNA denotes EBV genome
T10 504-511 cell_type denotes B cells
T11 594-618 protein denotes BamHI ZLF-1 gene product
T12 620-625 protein denotes ZEBRA
T13 703-720 protein denotes fusion transcript
T14 722-725 protein denotes RAZ
T15 759-771 DNA denotes BZLF-1 locus
T16 789-801 DNA denotes BRLF-1 locus
T17 827-840 protein denotes ZEBRA protein
T18 873-883 cell_type denotes thymocytes
T19 946-957 DNA denotes EBNA-1 gene
T20 970-980 cell_type denotes thymocytes
T21 1006-1017 DNA denotes Fp promoter
T22 1040-1054 DNA denotes Cp/Wp promoter
T23 1072-1097 cell_type denotes latently infected B cells
T24 1120-1129 protein denotes gp350/220
T25 1135-1153 protein denotes major coat protein
T26 1238-1244 DNA denotes LMP-2A
T27 1248-1259 DNA denotes EBER-1 loci
T28 1272-1282 cell_type denotes thymocytes
T29 1341-1351 cell_type denotes thymocytes
T30 1378-1385 cell_type denotes B cells
T31 1420-1430 cell_type denotes thymocytes
T32 1550-1567 DNA denotes replicative genes

pubmed-sentences-benchmark

Id Subject Object Predicate Lexical cue
S1 0-158 Sentence denotes Epstein-Barr virus replicative gene transcription during de novo infection of human thymocytes: simultaneous early expression of BZLF-1 and its repressor RAZ.
S2 159-232 Sentence denotes Epstein-Barr virus (EBV) is known to infect B cells and epithelial cells.
S3 233-306 Sentence denotes We and others have shown that EBV can also infect a subset of thymocytes.
S4 307-411 Sentence denotes Infection of thymocytes was accompanied by the appearance of linear EBV genome within 8 hr of infection.
S5 412-463 Sentence denotes Circularization of the EBV genome was not detected.
S6 464-571 Sentence denotes This is in contrast to the infection in B cells where the genome can circularize within 24 hr of infection.
S7 572-676 Sentence denotes The appearance of the BamHI ZLF-1 gene product, ZEBRA, by RT-PCR, was observed within 8 hr of infection.
S8 677-826 Sentence denotes The appearance of a novel fusion transcript (RAZ), which comprised regions of the BZLF-1 locus and the adjacent BRLF-1 locus, was detected by RT-PCR.
S9 827-907 Sentence denotes ZEBRA protein was also identified in infected thymocytes by immunoprecipitation.
S10 908-1098 Sentence denotes In addition, we demonstrated that the EBNA-1 gene in infected thymocytes was transcribed from the Fp promoter, rather than from the Cp/Wp promoter which is used in latently infected B cells.
S11 1099-1283 Sentence denotes Transcripts encoding gp350/220, the major coat protein of EBV, were identified, but we did not find any evidence of transcription from the LMP-2A or EBER-1 loci in infected thymocytes.
S12 1284-1386 Sentence denotes These observations suggest that de novo EBV infection of thymocytes differs from infection of B cells.
S13 1387-1492 Sentence denotes The main difference is that with thymocytes, no evidence could be found that the virus ever circularizes.
S14 1493-1584 Sentence denotes Rather, EBV remains in a linear configuration from which replicative genes are transcribed.

genia-medco-coref

Id Subject Object Predicate Lexical cue
C5 0-18 NP denotes Epstein-Barr virus
C39 78-94 NP denotes human thymocytes
C40 57-94 NP denotes de novo infection of human thymocytes
C1 129-135 NP denotes BZLF-1
C2 140-143 NP denotes its
C4 159-183 NP denotes Epstein-Barr virus (EBV)
C28 196-210 NP denotes infect B cells
C6 263-266 NP denotes EBV
C7 295-305 NP denotes thymocytes
C8 320-330 NP denotes thymocytes
C9 368-385 NP denotes linear EBV genome
C17 393-410 NP denotes 8 hr of infection
C10 431-445 NP denotes the EBV genome
C11 504-511 NP denotes B cells
C12 512-517 NP denotes where
C13 518-528 NP denotes the genome
C15 590-618 NP denotes the BamHI ZLF-1 gene product
C16 620-625 NP denotes ZEBRA
C21 630-636 NP denotes RT-PCR
C18 658-675 NP denotes 8 hr of infection
C19 695-726 NP denotes a novel fusion transcript (RAZ)
C20 728-733 NP denotes which
C22 819-825 NP denotes RT-PCR
C23 827-840 NP denotes ZEBRA protein
C24 864-883 NP denotes infected thymocytes
C25 961-980 NP denotes infected thymocytes
C26 1036-1054 NP denotes the Cp/Wp promoter
C27 1055-1060 NP denotes which
C29 1072-1097 NP denotes latently infected B cells
C30 1157-1160 NP denotes EBV
C31 1263-1282 NP denotes infected thymocytes
C32 1341-1351 NP denotes thymocytes
C41 1316-1351 NP denotes de novo EBV infection of thymocytes
C33 1378-1385 NP denotes B cells
C34 1420-1430 NP denotes thymocytes
C35 1464-1473 NP denotes the virus
C36 1501-1504 NP denotes EBV
C37 1516-1538 NP denotes a linear configuration
C38 1544-1549 NP denotes which
R1 C2 C1 coref-ident its,BZLF-1
R2 C4 C5 coref-ident Epstein-Barr virus (EBV),Epstein-Barr virus
R3 C6 C4 coref-ident EBV,Epstein-Barr virus (EBV)
R4 C7 C39 coref-ident thymocytes,human thymocytes
R5 C8 C7 coref-ident thymocytes,thymocytes
R6 C10 C9 coref-ident the EBV genome,linear EBV genome
R7 C12 C11 coref-relat where,B cells
R8 C13 C10 coref-ident the genome,the EBV genome
R9 C16 C15 coref-appos ZEBRA,the BamHI ZLF-1 gene product
R10 C18 C17 coref-ident 8 hr of infection,8 hr of infection
R11 C20 C19 coref-relat which,a novel fusion transcript (RAZ)
R12 C22 C21 coref-ident RT-PCR,RT-PCR
R13 C23 C16 coref-ident ZEBRA protein,ZEBRA
R14 C24 C8 coref-other infected thymocytes,thymocytes
R15 C25 C24 coref-ident infected thymocytes,infected thymocytes
R16 C27 C26 coref-relat which,the Cp/Wp promoter
R17 C29 C28 coref-other latently infected B cells,infect B cells
R18 C30 C6 coref-ident EBV,EBV
R19 C31 C25 coref-ident infected thymocytes,infected thymocytes
R20 C32 C31 coref-other thymocytes,infected thymocytes
R21 C41 C40 coref-ident de novo EBV infection of thymocytes,de novo infection of human thymocytes
R22 C33 C11 coref-ident B cells,B cells
R23 C34 C32 coref-ident thymocytes,thymocytes
R24 C35 C30 coref-ident the virus,EBV
R25 C36 C35 coref-ident EBV,the virus
R26 C38 C37 coref-relat which,a linear configuration

GENIAcorpus

Id Subject Object Predicate Lexical cue
T1 0-18 virus denotes Epstein-Barr virus
T2 57-74 other_name denotes de novo infection
T3 78-94 cell_type denotes human thymocytes
T4 96-125 other_name denotes simultaneous early expression
T5 129-135 protein_molecule denotes BZLF-1
T6 154-157 protein_molecule denotes RAZ
T7 159-177 virus denotes Epstein-Barr virus
T8 179-182 virus denotes EBV
T9 203-210 cell_type denotes B cells
T10 215-231 cell_type denotes epithelial cells
T11 263-266 virus denotes EBV
T12 295-305 cell_type denotes thymocytes
T13 320-330 cell_type denotes thymocytes
T14 368-374 DNA_family_or_group denotes linear
T15 375-378 virus denotes EBV
T16 435-438 virus denotes EBV
T17 504-511 cell_type denotes B cells
T18 594-618 protein_molecule denotes BamHI ZLF-1 gene product
T19 620-625 protein_molecule denotes ZEBRA
T20 630-636 other_name denotes RT-PCR
T21 703-720 protein_family_or_group denotes fusion transcript
T22 722-725 protein_molecule denotes RAZ
T23 759-765 protein_molecule denotes BZLF-1
T24 789-801 DNA_domain_or_region denotes BRLF-1 locus
T25 819-825 other_name denotes RT-PCR
T26 827-832 protein_molecule denotes ZEBRA
T27 873-883 cell_type denotes thymocytes
T28 887-906 other_name denotes immunoprecipitation
T29 946-952 protein_molecule denotes EBNA-1
T30 970-980 cell_type denotes thymocytes
T31 1006-1017 DNA_domain_or_region denotes Fp promoter
T32 1040-1054 DNA_domain_or_region denotes Cp/Wp promoter
T33 1072-1089 cell_type denotes latently infected
T34 1090-1097 cell_type denotes B cells
T35 1120-1129 protein_molecule denotes gp350/220
T36 1135-1153 protein_family_or_group denotes major coat protein
T37 1157-1160 virus denotes EBV
T38 1238-1244 DNA_domain_or_region denotes LMP-2A
T39 1248-1259 DNA_domain_or_region denotes EBER-1 loci
T40 1272-1282 cell_type denotes thymocytes
T41 1324-1327 virus denotes EBV
T42 1341-1351 cell_type denotes thymocytes
T43 1378-1385 cell_type denotes B cells
T44 1420-1430 cell_type denotes thymocytes
T45 1468-1473 virus denotes virus
T46 1501-1504 virus denotes EBV
T47 1518-1538 other_name denotes linear configuration
T48 1550-1567 DNA_family_or_group denotes replicative genes